Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012979 Carpinus fangiana HOM05D005067 ORTHO05D006105 1.3e-114 416.4 203 100.0
Haze_21349 Corylus avellana HOM05D005067 ORTHO05D006105 1.3e-53 213.8 113 92.0
Haze_21343 Corylus avellana HOM05D005067 ORTHO05D006105 2.1e-53 213.0 113 91.2
CiPaw.06G112100 Carya illinoinensis HOM05D005067 ORTHO05D006105 6.2e-45 184.9 99 88.9
CiPaw.05G096900 Carya illinoinensis HOM05D005067 ORTHO05D006105 1.8e-44 183.3 99 88.9
Dinv26521 Davidia involucrata HOM05D005067 ORTHO05D006105 2.0e-43 179.9 99 86.9
TAR723G0001 Trochodendron aralioides HOM05D005067 ORTHO05D006105 2.6e-43 179.5 99 84.8
Actinidia23110 Actinidia chinensis HOM05D005067 ORTHO05D006105 3.4e-43 179.1 99 84.8
Ca_01855_v3 Cicer arietinum L. HOM05D005067 ORTHO05D006105 5.8e-43 178.3 99 83.8
Glyma.06G185600 Glycine max HOM05D005067 ORTHO05D006105 1.7e-42 176.8 99 83.8
Hma1.2p1_0738F.1_g211080 Hydrangea macrophylla HOM05D005067 ORTHO05D006105 2.2e-42 176.4 99 83.8
TPR.G27257 Trifolium pratense HOM05D005067 ORTHO05D006105 2.9e-42 176.0 99 82.8
Thecc.09G262100 Theobroma cacao HOM05D005067 ORTHO05D006105 3.8e-42 175.6 99 83.8
Lj3g0015814 Lotus japonicus HOM05D005067 ORTHO05D006105 4.9e-42 175.3 99 81.8
Phvul.009G181800 Phaseolus vulgaris HOM05D005067 ORTHO05D006105 8.4e-42 174.5 95 85.3
CSS0001472 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 1.1e-41 174.1 99 83.8
CSS0007870 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 1.1e-41 174.1 99 83.8
Medtr8g012945 Medicago truncatula HOM05D005067 ORTHO05D006105 1.1e-41 174.1 99 80.8
arahy.Tifrunner.gnm1.ann1.35C0M2 Arachis hypogaea HOM05D005067 ORTHO05D006105 1.4e-41 173.7 99 82.8
arahy.Tifrunner.gnm1.ann1.WU9C10 Arachis hypogaea HOM05D005067 ORTHO05D006105 1.4e-41 173.7 99 82.8
Glyma.04G179100 Glycine max HOM05D005067 ORTHO05D006105 1.4e-41 173.7 99 81.8
Duzib168G1737 Durio zibethinus HOM05D005067 ORTHO05D006105 2.4e-41 172.9 99 83.8
MELO3C026758.2 Cucumis melo HOM05D005067 ORTHO05D006105 4.2e-41 172.2 95 86.3
Psat1g160400 Pisum sativum HOM05D005067 ORTHO05D006105 4.2e-41 172.2 99 79.8
Sed0016956 Sechium edule HOM05D005067 ORTHO05D006105 4.2e-41 172.2 95 87.4
GSVIVG01001135001 Vitis vinifera HOM05D005067 ORTHO05D006105 4.2e-41 172.2 99 82.8
arahy.Tifrunner.gnm1.ann1.S7KJ0A Arachis hypogaea HOM05D005067 ORTHO05D006105 5.5e-41 171.8 99 81.8
arahy.Tifrunner.gnm1.ann1.V7S8AY Arachis hypogaea HOM05D005067 ORTHO05D006105 5.5e-41 171.8 99 81.8
Prupe.4G224700 Prunus persica HOM05D005067 ORTHO05D006105 5.5e-41 171.8 99 81.8
Potri.001G071900 Populus trichocarpa HOM05D005067 ORTHO05D006105 7.1e-41 171.4 99 81.8
Oeu003268.1 Olea europaea HOM05D005067 ORTHO05D006105 9.3e-41 171.0 99 81.8
Medtr2g034290 Medicago truncatula HOM05D005067 ORTHO05D006105 1.2e-40 170.6 95 82.1
MD03G1192500 Malus domestica HOM05D005067 ORTHO05D006105 1.6e-40 170.2 99 80.8
MD11G1209000 Malus domestica HOM05D005067 ORTHO05D006105 1.6e-40 170.2 99 81.8
vmacro05123 Vaccinium macrocarpon HOM05D005067 ORTHO05D006105 2.1e-40 169.9 99 80.8
Duzib150G1019 Durio zibethinus HOM05D005067 ORTHO05D006105 2.7e-40 169.5 99 81.8
Potri.003G159100 Populus trichocarpa HOM05D005067 ORTHO05D006105 2.7e-40 169.5 99 80.8
RcHm_v2.0_Chr5g0041661 Rosa chinensis HOM05D005067 ORTHO05D006105 3.5e-40 169.1 99 81.8
Gohir.D09G102100 Gossypium hirsutum HOM05D005067 ORTHO05D006105 4.6e-40 168.7 99 81.8
Gohir.D13G224500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 6.0e-40 168.3 99 80.8
Ciclev10026832m.g Citrus clementina HOM05D005067 ORTHO05D006105 1.0e-39 167.5 97 81.4
Gorai.013G255300 Gossypium raimondii HOM05D005067 ORTHO05D006105 1.0e-39 167.5 99 80.8
HanXRQChr05g0134241 Helianthus annuus HOM05D005067 ORTHO05D006105 1.0e-39 167.5 99 80.8
arahy.Tifrunner.gnm1.ann1.75T26B Arachis hypogaea HOM05D005067 ORTHO05D006105 1.3e-39 167.2 99 79.8
arahy.Tifrunner.gnm1.ann1.MX8VGA Arachis hypogaea HOM05D005067 ORTHO05D006105 1.3e-39 167.2 99 79.8
FAN25G2289 Fragaria x ananassa HOM05D005067 ORTHO05D006105 1.3e-39 167.2 99 80.8
Manes.08G098600 Manihot esculenta HOM05D005067 ORTHO05D006105 1.3e-39 167.2 99 81.8
ATR0582G276 Amborella trichopoda HOM05D005067 ORTHO05D006105 1.8e-39 166.8 99 77.8
FvH4_3g23621 Fragaria vesca HOM05D005067 ORTHO05D006105 2.3e-39 166.4 99 80.8
FAN16G3498 Fragaria x ananassa HOM05D005067 ORTHO05D006105 2.3e-39 166.4 99 80.8
Gorai.006G119400 Gossypium raimondii HOM05D005067 ORTHO05D006105 2.3e-39 166.4 93 82.8
Sed0000673 Sechium edule HOM05D005067 ORTHO05D006105 3.0e-39 166.0 95 82.1
TPR.G17128 Trifolium pratense HOM05D005067 ORTHO05D006105 5.1e-39 165.2 99 76.8
arahy.Tifrunner.gnm1.ann1.4NI9N6 Arachis hypogaea HOM05D005067 ORTHO05D006105 6.7e-39 164.9 99 78.8
Gohir.A13G220500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 6.7e-39 164.9 99 78.8
Sp2g18390 Schrenkiella parvula HOM05D005067 ORTHO05D006105 8.7e-39 164.5 99 74.7
A06p39480 Brassica napus HOM05D005067 ORTHO05D006105 1.5e-38 163.7 103 71.8
COL.COLO4_25264 Corchorus olitorius HOM05D005067 ORTHO05D006105 1.5e-38 163.7 97 78.4
BcaC03g17619 Brassica carinata HOM05D005067 ORTHO05D006105 1.9e-38 163.3 99 74.7
arahy.Tifrunner.gnm1.ann1.48UY8P Arachis hypogaea HOM05D005067 ORTHO05D006105 2.5e-38 162.9 99 77.8
C07p38790 Brassica napus HOM05D005067 ORTHO05D006105 2.5e-38 162.9 103 71.8
FAN21G3427 Fragaria x ananassa HOM05D002614 ORTHO05D002794 2.5e-38 162.9 97 77.3
Lalb_Chr12g0209921 Lupinus albus HOM05D005067 ORTHO05D006105 3.3e-38 162.5 91 81.3
A02p37170 Brassica napus HOM05D005067 ORTHO05D006105 4.3e-38 162.2 99 74.7
BraA02t08703Z Brassica rapa HOM05D005067 ORTHO05D006105 4.3e-38 162.2 99 74.7
CANSAT01G3113 Cannabis sativa HOM05D005067 ORTHO05D006105 4.3e-38 162.2 95 76.8
BolC7t44398H Brassica oleracea HOM05D005067 ORTHO05D006105 5.6e-38 161.8 99 73.7
BraA06t26863Z Brassica rapa HOM05D005067 ORTHO05D006105 5.6e-38 161.8 99 73.7
FAN11G0656 Fragaria x ananassa HOM05D001534 ORTHO05D003503 5.6e-38 161.8 96 79.2
BcaB07g30049 Brassica carinata HOM05D005067 ORTHO05D006105 7.4e-38 161.4 99 73.7
Aa31LG3G14180 Aethionema arabicum HOM05D005067 ORTHO05D006105 9.6e-38 161.0 98 73.5
AUR62013622 Chenopodium quinoa HOM05D005067 ORTHO05D006105 1.3e-37 160.6 99 74.7
C02p56190 Brassica napus HOM05D005067 ORTHO05D006105 2.1e-37 159.8 99 71.7
Hund07355 Selenicereus undatus HOM05D005067 ORTHO05D006105 2.8e-37 159.5 118 63.6
Aqoxy5G02883 Aquilegia oxysepala HOM05D005067 ORTHO05D006105 3.7e-37 159.1 99 74.7
AUR62004226 Chenopodium quinoa HOM05D005067 ORTHO05D006105 3.7e-37 159.1 99 73.7
Lsat_1_v5_gn_1_32740 Lactuca sativa HOM05D005067 ORTHO05D006105 3.7e-37 159.1 99 75.8
Sabra03G0115500 Salix brachista HOM05D005067 ORTHO05D006105 3.7e-37 159.1 93 78.5
BcaC04g23800 Brassica carinata HOM05D005067 ORTHO05D006105 4.8e-37 158.7 99 71.7
BolC9t53383H Brassica oleracea HOM05D005067 ORTHO05D006105 4.8e-37 158.7 99 71.7
THA.LOC104807181 Tarenaya hassleriana HOM05D005067 ORTHO05D006105 4.8e-37 158.7 99 73.7
PSO541G3634 Papaver somniferum HOM05D005067 ORTHO05D006105 8.1e-37 157.9 99 72.7
Atru.chr12.1484 Acer truncatum HOM05D005067 ORTHO05D006105 1.1e-36 157.5 94 79.8
C09p04540 Brassica napus HOM05D005067 ORTHO05D006105 1.4e-36 157.1 99 70.7
HPP92_001280 Vanilla planifolia HOM05D005067 ORTHO05D006105 1.4e-36 157.1 99 74.7
Sabra01G0050500 Salix brachista HOM05D005067 ORTHO05D006105 1.8e-36 156.8 120 66.7
Carub.0014s0003 Capsella rubella HOM05D005067 ORTHO05D006105 2.4e-36 156.4 95 74.7
EL10Ac1g00908 Beta vulgaris HOM05D005067 ORTHO05D006105 3.1e-36 156.0 104 72.1
AL8G19880 Arabidopsis lyrata HOM05D005067 ORTHO05D006105 4.0e-36 155.6 95 73.7
PSO675G6660 Papaver somniferum HOM05D005067 ORTHO05D006105 4.0e-36 155.6 99 71.7
arahy.Tifrunner.gnm1.ann1.XUTR46 Arachis hypogaea HOM05D005067 ORTHO05D006105 5.3e-36 155.2 99 75.8
Thhalv10005189m.g Eutrema salsugineum HOM05D005067 ORTHO05D006105 5.3e-36 155.2 99 71.7
Hund21907 Selenicereus undatus HOM05D005067 ORTHO05D006105 6.9e-36 154.8 113 67.3
AT5G47890 Arabidopsis thaliana HOM05D005067 ORTHO05D006105 1.2e-35 154.1 95 72.6
Nitab4.5_0001953g0110 Nicotiana tabacum HOM05D005067 ORTHO05D006105 1.2e-35 154.1 99 74.7
Migut.D02119 Erythranthe guttata HOM05D005067 ORTHO05D006105 2.6e-35 152.9 95 77.9
Nitab4.5_0009655g0030 Nicotiana tabacum HOM05D005067 ORTHO05D006105 2.6e-35 152.9 99 72.7
MSTRG.18590 Avicennia marina HOM05D005067 ORTHO05D006105 4.5e-35 152.1 99 73.7
PGR102G0153 Punica granatum HOM05D005067 ORTHO05D006105 5.8e-35 151.8 92 73.9
Solyc06g075810.3 Solanum lycopersicum HOM05D005067 ORTHO05D006105 5.8e-35 151.8 99 74.7
Sopen06g032240 Solanum pennellii HOM05D005067 ORTHO05D006105 5.8e-35 151.8 99 74.7
HanXRQChr08g0228171 Helianthus annuus HOM05D005067 ORTHO05D006105 1.0e-34 151.0 99 70.7
PGSC0003DMG400030398 Solanum tuberosum HOM05D005067 ORTHO05D006105 1.0e-34 151.0 97 75.3
CARHR184460 Cardamine hirsuta HOM05D005067 ORTHO05D006105 1.3e-34 150.6 95 70.5
CDE02G2760 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 1.7e-34 150.2 96 70.8
Nitab4.5_0002882g0010 Nicotiana tabacum HOM05D005067 ORTHO05D006105 1.7e-34 150.2 99 73.7
BcaB04g19540 Brassica carinata HOM05D005067 ORTHO05D006105 3.8e-34 149.1 99 66.7
ECA238G3917 Erigeron canadensis HOM05D005067 ORTHO05D006105 3.8e-34 149.1 90 76.7
Cc01_g12390 Coffea canephora HOM05D005067 ORTHO05D006105 6.5e-34 148.3 99 71.7
TWI18G1269 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 1.1e-33 147.5 97 69.1
Peaxi162Scf00679g00133 Petunia axillaris HOM05D005067 ORTHO05D006105 1.4e-33 147.1 95 72.6
PGSC0003DMG400015529 Solanum tuberosum HOM05D005067 ORTHO05D006105 1.4e-33 147.1 99 70.7
TWI36G0882 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 1.4e-33 147.1 98 71.4
ClCG10G013160 Citrullus lanatus HOM05D005067 ORTHO05D006105 2.5e-33 146.4 146 54.8
BolC2t11675H Brassica oleracea HOM05D005067 ORTHO05D006105 5.5e-33 145.2 135 54.8
MBI11_g22246_MAGBIO Magnolia biondii HOM05D005067 ORTHO05D006105 5.5e-33 145.2 91 75.8
Zm00001eb283340 Zea mays HOM05D005067 ORTHO05D006105 1.6e-32 143.7 97 66.0
Eucgr.B03411 Eucalyptus grandis HOM05D005067 ORTHO05D006105 2.7e-32 142.9 102 67.6
CDE02G0654 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 4.6e-32 142.1 92 69.6
Zm00001eb345800 Zea mays HOM05D005067 ORTHO05D006105 3.0e-31 139.4 97 63.9
unitig_736.g22438 Utricularia gibba HOM05D005067 ORTHO05D006105 3.9e-31 139.0 95 68.4
Glyma.06G272300 Glycine max HOM05D005067 ORTHO05D006105 1.1e-30 137.5 75 82.7
TAR718G0005 Trochodendron aralioides HOM05D005067 ORTHO05D006105 1.6e-29 133.7 71 87.3
Mapoly0012s0093 Marchantia polymorpha HOM05D005067 ORTHO05D006105 4.8e-29 132.1 97 62.9
Actinidia14133 Actinidia chinensis HOM05D005067 ORTHO05D006105 1.8e-28 130.2 67 86.6
Gohir.A09G105300 Gossypium hirsutum HOM05D005067 ORTHO05D006105 4.1e-28 129.0 70 81.4
Pp3c20_8510 Physcomitrium patens HOM05D005067 ORTHO05D006105 2.0e-27 126.7 91 62.6
Psat0s3432g0200 Pisum sativum HOM05D005067 ORTHO05D006105 7.6e-27 124.8 68 79.4
Lalb_Chr07g0194241 Lupinus albus HOM05D005067 ORTHO05D006105 1.0e-26 124.4 70 78.6
Glyma.02G198800 Glycine max HOM05D005067 ORTHO05D006105 2.9e-26 122.9 93 61.3
arahy.Tifrunner.gnm1.ann1.AQUA2C Arachis hypogaea HOM05D005067 ORTHO05D006105 1.1e-25 120.9 71 80.3
SalBow3G2136 Salvia bowleyana HOM05D005067 ORTHO05D006105 1.9e-25 120.2 99 64.6
arahy.Tifrunner.gnm1.ann1.8NA9N0 Arachis hypogaea HOM05D005067 ORTHO05D006105 2.5e-25 119.8 71 78.9
QL03p047951 Quercus lobata HOM05D005067 ORTHO05D006105 5.5e-25 118.6 66 83.3
arahy.Tifrunner.gnm1.ann1.P4C6EV Arachis hypogaea HOM05D005067 ORTHO05D006105 7.2e-25 118.2 68 76.5
SMO119G0159 Selaginella moellendorffii HOM05D005067 ORTHO05D006105 2.7e-24 116.3 91 57.1
AagrBONN_evm.TU.Sc2ySwM_117.283 Anthoceros agrestis HOM05D005067 ORTHO05D006105 8.7e-23 111.3 82 61.0
Sc03g0003970 Simmondsia chinensis HOM05D005067 ORTHO05D006105 1.5e-22 110.5 64 75.0
SEGI_29862 Sequoiadendron giganteum HOM05D005067 ORTHO05D006105 3.3e-22 109.4 64 75.0
SHI02599 Sapria himalayana HOM05D005067 ORTHO05D006105 6.3e-21 105.1 67 70.1
Cre16.g679500 Chlamydomonas reinhardtii HOM05D005067 ORTHO05D006105 8.2e-21 104.8 96 49.0
DCAR_005307 Daucus carota HOM05D005067 ORTHO05D006105 1.8e-20 103.6 62 74.2
Os04g0310500 Oryza sativa ssp. japonica HOM05D005067 ORTHO05D006105 6.9e-20 101.7 64 67.2
unitig_899.g14896 Utricularia gibba HOM05D005067 ORTHO05D006105 2.6e-19 99.8 63 74.6
Pp3c23_15790 Physcomitrium patens HOM05D005067 ORTHO05D006105 4.6e-16 89.0 61 63.9
Nitab4.5_0009487g0020 Nicotiana tabacum HOM05D005067 ORTHO05D006105 2.2e-13 80.1 101 49.5
PRCOL_00006750 Prasinoderma coloniale HOM05D005067 ORTHO05D006105 2.8e-13 79.7 90 40.0
MCO03G395 Micromonas commoda HOM05D005067 ORTHO05D006105 1.5e-11 73.9 81 43.2


User provided reference genes

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