Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012978 Carpinus fangiana HOM05D008051 ORTHO05D009905 1.4e-73 280.0 207 100.0
Haze_21342 Corylus avellana HOM05D008051 ORTHO05D009905 6.5e-58 228.0 207 84.5
Haze_21340 Corylus avellana HOM05D008051 ORTHO05D009905 5.5e-57 224.9 207 84.1
Haze_09724 Corylus avellana HOM05D008051 ORTHO05D009905 3.7e-53 212.2 157 87.9
Cfa020295 Carpinus fangiana HOM05D008051 ORTHO05D009905 4.8e-53 211.8 159 86.8
QL08p007021 Quercus lobata HOM05D008051 ORTHO05D009905 1.9e-28 130.2 159 68.6
Dinv40787 Davidia involucrata HOM05D002089 ORTHO05D002848 1.2e-24 117.5 151 64.2
Oeu021430.1 Olea europaea HOM05D008051 ORTHO05D009905 3.6e-24 115.9 153 66.7
CAN.G407.107 Capsicum annuum HOM05D008051 ORTHO05D009905 2.3e-23 113.2 157 62.4
Eucgr.F00712 Eucalyptus grandis HOM05D008051 ORTHO05D009905 1.5e-22 110.5 148 60.1
PGSC0003DMG401000629 Solanum tuberosum HOM05D008051 ORTHO05D009905 2.0e-22 110.2 153 62.1
Sabra11G0071300 Salix brachista HOM05D008051 ORTHO05D009905 3.4e-22 109.4 159 60.4
CiPaw.11G193500 Carya illinoinensis HOM05D008051 ORTHO05D009905 4.4e-22 109.0 133 63.9
DCAR_009646 Daucus carota HOM05D008051 ORTHO05D009905 4.4e-22 109.0 122 73.0
Potri.001G355700 Populus trichocarpa HOM05D008051 ORTHO05D009905 1.7e-21 107.1 157 62.4
Rhsim06G0068300 Rhododendron simsii HOM05D008051 ORTHO05D009905 2.2e-21 106.7 99 50.5
Ah.04g166050 Amaranthus hybridus HOM05D000120 ORTHO05D002159 4.9e-21 105.5 147 61.2
CSS0002609 Camellia sinensis var. sinensis HOM05D008051 ORTHO05D009905 1.1e-20 104.4 135 66.7
Ciclev10010548m.g Citrus clementina HOM05D008051 ORTHO05D009905 1.1e-20 104.4 153 62.7
Solyc03g116450.1 Solanum lycopersicum HOM05D008051 ORTHO05D009905 1.1e-20 104.4 153 60.8
MBI18_g27147_MAGBIO Magnolia biondii HOM05D008051 ORTHO05D009905 1.4e-20 104.0 130 68.5
RcHm_v2.0_Chr5g0041151 Rosa chinensis HOM05D008051 ORTHO05D009905 5.4e-20 102.1 152 63.8
CANSAT11G0109 Cannabis sativa HOM05D008051 ORTHO05D009905 1.6e-19 100.5 70 62.9
vmacro21377 Vaccinium macrocarpon HOM05D008051 ORTHO05D009905 2.1e-19 100.1 145 57.9
EL10Ac4g07747 Beta vulgaris HOM05D008051 ORTHO05D009905 4.6e-19 99.0 123 68.3
Glyma.18G093000 Glycine max HOM05D008051 ORTHO05D009905 7.8e-19 98.2 103 47.6
TWI39G0594 Tripterygium wilfordii HOM05D008051 ORTHO05D009905 1.0e-18 97.8 172 55.8
Gohir.A01G083500 Gossypium hirsutum HOM05D008051 ORTHO05D009905 6.6e-18 95.1 148 62.2
Gorai.002G092500 Gossypium raimondii HOM05D008051 ORTHO05D009905 3.3e-17 92.8 146 61.6
Cpa.g.sc12.286 Carica papaya HOM05D008051 ORTHO05D009905 1.6e-16 90.5 104 44.2
COL.COLO4_09713 Corchorus olitorius HOM05D008051 ORTHO05D009905 1.6e-16 90.5 152 57.2
Duzib213G0687 Durio zibethinus HOM05D008051 ORTHO05D009905 1.6e-16 90.5 161 58.4
Gohir.D01G070000 Gossypium hirsutum HOM05D008051 ORTHO05D009905 2.1e-16 90.1 146 61.0
Sabra11G0072200 Salix brachista HOM05D008051 ORTHO05D009905 3.6e-16 89.4 100 46.0
Phvul.006G046600 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 1.4e-15 87.4 104 44.2
Thecc.07G029800 Theobroma cacao HOM05D008051 ORTHO05D009905 1.8e-15 87.0 153 56.9
Manes.15G067600 Manihot esculenta HOM05D008051 ORTHO05D009905 8.9e-15 84.7 128 41.4
ATR0752G075 Amborella trichopoda HOM05D008051 ORTHO05D009905 1.5e-14 84.0 123 63.4
arahy.Tifrunner.gnm1.ann1.QA2XZ5 Arachis hypogaea HOM05D008051 ORTHO05D009905 1.5e-14 84.0 102 45.1
SGA_v2.0_scaffold196G40891 Striga asiatica HOM05D008051 ORTHO05D009905 1.5e-14 84.0 116 68.1
VMungo0540G2374 Vigna mungo HOM05D008051 ORTHO05D009905 1.5e-14 84.0 77 49.4
Cpa.g.sc12.259 Carica papaya HOM05D008051 ORTHO05D009905 9.9e-14 81.3 89 47.2
Medtr8g442670 Medicago truncatula HOM05D008051 ORTHO05D009905 9.9e-14 81.3 55 54.5
SGA_v2.0_scaffold196G40892 Striga asiatica HOM05D008051 ORTHO05D009905 1.7e-13 80.5 116 67.2
Lalb_Chr17g0348611 Lupinus albus HOM05D008051 ORTHO05D009905 2.2e-13 80.1 46 65.2
MSTRG.4127 Avicennia marina HOM05D008051 ORTHO05D009905 2.9e-13 79.7 153 55.6
Glyma.14G021900 Glycine max HOM05D008051 ORTHO05D009905 3.8e-13 79.3 101 41.6
Migut.N00262 Erythranthe guttata HOM05D008051 ORTHO05D009905 6.4e-13 78.6 153 58.2
Glyma.02G292700 Glycine max HOM05D008051 ORTHO05D009905 6.4e-13 78.6 101 40.6
Psat2g012240 Pisum sativum HOM05D008051 ORTHO05D009905 6.4e-13 78.6 63 46.0
TPR.G33768 Trifolium pratense HOM05D008051 ORTHO05D009905 6.4e-13 78.6 103 42.7
Phvul.008G269500 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 1.1e-12 77.8 98 42.9
Medtr7g025060 Medicago truncatula HOM05D008051 ORTHO05D009905 1.4e-12 77.4 87 40.2
THA.LOC104798770 Tarenaya hassleriana HOM05D012777 ORTHO05D009905 4.2e-12 75.9 153 49.7
Lsat_1_v5_gn_5_3180 Lactuca sativa HOM05D008051 ORTHO05D009905 5.4e-12 75.5 118 62.7
TPR.G24073 Trifolium pratense HOM05D008051 ORTHO05D009905 7.1e-12 75.1 103 39.8
Lalb_Chr15g0081481 Lupinus albus HOM05D008051 ORTHO05D009905 1.2e-11 74.3 100 39.0
Medtr7g074340 Medicago truncatula HOM05D008051 ORTHO05D009905 1.6e-11 73.9 54 53.7
Medtr7g074350 Medicago truncatula HOM05D008051 ORTHO05D009905 1.6e-11 73.9 54 53.7
Medtr7g074360 Medicago truncatula HOM05D008051 ORTHO05D009905 1.6e-11 73.9 54 53.7
PGR083G0962 Punica granatum HOM05D008051 ORTHO05D009905 2.1e-11 73.6 98 37.8
Prupe.4G221300 Prunus persica HOM05D008051 ORTHO05D009905 2.7e-11 73.2 76 43.4
MD11G1211300 Malus domestica HOM05D008051 ORTHO05D009905 3.5e-11 72.8 107 37.4
Medtr5g063040 Medicago truncatula HOM05D008051 ORTHO05D009905 3.5e-11 72.8 97 38.1
TPR.G1175 Trifolium pratense HOM05D008051 ORTHO05D009905 4.6e-11 72.4 89 44.9
HanXRQChr08g0233561 Helianthus annuus HOM05D008051 ORTHO05D009905 6.0e-11 72.0 155 49.7
Lalb_Chr04g0248291 Lupinus albus HOM05D008051 ORTHO05D009905 1.7e-10 70.5 108 35.2
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 6.6e-10 68.6 67 46.3
Medtr5g093370 Medicago truncatula HOM05D008051 ORTHO05D009905 1.5e-09 67.4 103 35.9
Nn1g07253 Nelumbo nucifera HOM05D008051 ORTHO05D009905 4.3e-09 65.9 98 40.8
Nn7g36860 Nelumbo nucifera HOM05D008051 ORTHO05D009905 1.2e-08 64.3 153 51.6
Medtr5g093340 Medicago truncatula HOM05D008051 ORTHO05D009905 2.1e-08 63.5 103 35.0
LjContig00272g0004425 Lotus japonicus HOM05D008051 ORTHO05D009905 2.8e-08 63.2 95 35.8
Medtr8g442580 Medicago truncatula HOM05D008051 ORTHO05D009905 1.4e-07 60.8 83 36.1
TPR.G1196 Trifolium pratense HOM05D008051 ORTHO05D009905 4.0e-07 59.3 89 38.2


User provided reference genes

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