Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012970 Carpinus fangiana HOM05D003774 ORTHO05D010174 1.5e-167 592.8 312 100.0
Haze_21314 Corylus avellana HOM05D003774 ORTHO05D010174 1.9e-146 522.7 319 89.7
CiPaw.07G235600 Carya illinoinensis HOM05D003774 ORTHO05D010174 5.7e-114 414.8 321 73.5
Manes.18G106000 Manihot esculenta HOM05D003774 ORTHO05D010174 9.4e-101 370.9 314 64.6
Sabra13G0091200 Salix brachista HOM05D003774 ORTHO05D009174 2.3e-99 366.3 323 64.1
Thecc.08G192700 Theobroma cacao HOM05D003774 ORTHO05D010174 2.0e-98 363.2 290 68.3
RcHm_v2.0_Chr7g0227131 Rosa chinensis HOM05D003774 ORTHO05D010174 7.5e-98 361.3 290 66.6
Prupe.1G555700 Prunus persica HOM05D003774 ORTHO05D010174 2.2e-94 349.7 259 71.0
FvH4_5g31600 Fragaria vesca HOM05D003774 ORTHO05D010174 3.8e-94 349.0 312 61.5
CANSAT25G1591 Cannabis sativa HOM05D003774 ORTHO05D010174 6.5e-94 348.2 260 68.8
Atru.chr13.2372 Acer truncatum HOM05D003774 ORTHO05D010174 1.9e-93 346.7 284 65.5
FAN07G1602 Fragaria x ananassa HOM05D003774 ORTHO05D010174 3.2e-93 345.9 313 60.7
Ciclev10003535m.g Citrus clementina HOM05D003774 ORTHO05D010174 5.5e-93 345.1 266 69.9
FAN08G2588 Fragaria x ananassa HOM05D003774 ORTHO05D010174 5.5e-93 345.1 259 69.5
MD14G1036300 Malus domestica HOM05D003774 ORTHO05D010174 9.4e-93 344.4 296 65.9
Peaxi162Scf00688g00424 Petunia axillaris HOM05D003774 ORTHO05D010174 1.6e-92 343.6 258 67.4
Sp1g30100 Schrenkiella parvula HOM05D003774 ORTHO05D010174 4.0e-91 339.0 275 62.9
PGR042G3332 Punica granatum HOM05D003774 ORTHO05D010174 4.4e-90 335.5 258 67.1
Nitab4.5_0005616g0030 Nicotiana tabacum HOM05D003774 ORTHO05D010174 1.3e-89 334.0 258 68.6
Eucgr.F02989 Eucalyptus grandis HOM05D003774 ORTHO05D010174 1.7e-89 333.6 311 61.1
A09p31890 Brassica napus HOM05D003774 ORTHO05D010174 2.8e-89 332.8 310 58.7
PGSC0003DMG400026729 Solanum tuberosum HOM05D003774 ORTHO05D010174 2.8e-89 332.8 258 68.6
BraA09t38729Z Brassica rapa HOM05D003774 ORTHO05D010174 6.3e-89 331.6 270 63.3
Solyc11g027830.2 Solanum lycopersicum HOM05D003774 ORTHO05D010174 1.1e-88 330.9 259 66.4
THA.LOC104816539 Tarenaya hassleriana HOM05D003774 ORTHO05D010174 1.1e-88 330.9 305 61.0
BolC6t36225H Brassica oleracea HOM05D003774 ORTHO05D010174 1.4e-88 330.5 266 63.9
BcaC08g43723 Brassica carinata HOM05D003774 ORTHO05D010174 1.8e-88 330.1 270 63.0
Nitab4.5_0001463g0060 Nicotiana tabacum HOM05D003774 ORTHO05D010174 1.8e-88 330.1 258 67.8
Actinidia29409 Actinidia chinensis HOM05D003774 ORTHO05D010174 4.1e-88 328.9 259 69.5
AL1G50100 Arabidopsis lyrata HOM05D003774 ORTHO05D010174 4.1e-88 328.9 262 64.9
BcaB07g33098 Brassica carinata HOM05D003774 ORTHO05D010174 7.0e-88 328.2 286 61.5
C06p11060 Brassica napus HOM05D003774 ORTHO05D010174 9.1e-88 327.8 258 64.7
Lsat_1_v5_gn_1_25800 Lactuca sativa HOM05D003774 ORTHO05D010174 1.2e-87 327.4 264 65.9
CAN.G1483.1 Capsicum annuum HOM05D003774 ORTHO05D010174 5.9e-87 325.1 258 65.5
TWI14G1031 Tripterygium wilfordii HOM05D003774 ORTHO05D010174 7.7e-87 324.7 230 73.9
Sopen11g022590 Solanum pennellii HOM05D003774 ORTHO05D010174 1.0e-86 324.3 261 66.7
Carub.0347s0001 Capsella rubella HOM05D003774 ORTHO05D010174 1.7e-86 323.6 262 64.5
Thhalv10001819m.g Eutrema salsugineum HOM05D003774 ORTHO05D010174 1.9e-85 320.1 258 64.3
HanXRQChr02g0036571 Helianthus annuus HOM05D003774 ORTHO05D010174 5.5e-85 318.5 310 58.4
Migut.C01324 Erythranthe guttata HOM05D003774 ORTHO05D010174 1.0e-83 314.3 260 63.1
CsaV3_5G040540 Cucumis sativus L. HOM05D003774 ORTHO05D010174 1.2e-82 310.8 276 60.1
MBI03_g45112_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D010174 1.2e-82 310.8 308 59.7
DCAR_017444 Daucus carota HOM05D003774 ORTHO05D010174 1.5e-82 310.5 248 63.3
PSO170G3079 Papaver somniferum HOM05D003774 ORTHO05D010174 2.2e-81 306.6 245 64.5
PSO782G0406 Papaver somniferum HOM05D003774 ORTHO05D010174 2.2e-81 306.6 276 59.8
GSVIVG01026088001 Vitis vinifera HOM05D003774 ORTHO05D010174 5.4e-80 302.0 216 70.8
Cc00_g20990 Coffea canephora HOM05D003774 ORTHO05D010174 1.6e-79 300.4 286 57.7
FAN18G3876 Fragaria x ananassa HOM05D003402 ORTHO05D003939 7.3e-77 291.6 311 54.3
Potri.013G105500 Populus trichocarpa HOM05D003774 ORTHO05D010174 9.5e-77 291.2 212 74.1
Cpa.g.sc66.3 Carica papaya HOM05D003774 ORTHO05D010174 2.1e-76 290.0 207 73.4
ClCG08G000190 Citrullus lanatus HOM05D003774 ORTHO05D010174 1.2e-74 284.3 318 52.5
MD04G1056900 Malus domestica HOM05D003774 ORTHO05D010174 2.9e-73 279.6 209 70.8
COL.COLO4_24648 Corchorus olitorius HOM05D003774 ORTHO05D010174 2.7e-71 273.1 236 63.6
MBI03_g46804_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D010174 3.0e-70 269.6 271 57.6
ECA247G3883 Erigeron canadensis HOM05D003774 ORTHO05D009174 8.6e-70 268.1 209 65.6
AT1G35340 Arabidopsis thaliana HOM05D003774 ORTHO05D010174 4.3e-69 265.8 209 64.6
Oeu013897.1 Olea europaea HOM05D003774 ORTHO05D010174 2.2e-65 253.4 208 62.5
Aa31LG6G8720 Aethionema arabicum HOM05D003774 ORTHO05D009174 3.2e-64 249.6 252 54.0
SEGI_18058 Sequoiadendron giganteum HOM05D003774 ORTHO05D010174 1.0e-62 244.6 247 52.2
Dinv41759 Davidia involucrata HOM05D003774 ORTHO05D010174 2.0e-58 230.3 221 57.9
Zm00001eb169160 Zea mays HOM05D003774 ORTHO05D010174 9.8e-58 228.0 243 50.2
Pp3c18_9200 Physcomitrium patens HOM05D003774 ORTHO05D010174 1.4e-51 207.6 247 44.5
Mapoly0085s0045 Marchantia polymorpha HOM05D003774 ORTHO05D010174 4.6e-47 192.6 266 39.1
MELO3C022227.2 Cucumis melo HOM05D003774 ORTHO05D010174 7.8e-47 191.8 276 44.2
CARHR034170 Cardamine hirsuta HOM05D003774 ORTHO05D010174 5.1e-38 162.5 114 72.8
TAR628G1250 Trochodendron aralioides HOM05D003774 ORTHO05D010174 9.6e-37 158.3 153 60.8
Rhsim11G0052800 Rhododendron simsii HOM05D003774 ORTHO05D000166 1.2e-34 151.4 116 69.8
MSTRG.1569 Avicennia marina HOM05D003774 ORTHO05D010174 3.4e-34 149.8 127 62.2
Lj7A284G37 Lonicera japonica HOM05D003774 ORTHO05D010174 1.4e-32 144.4 136 60.3
FvH4_5g26640 Fragaria vesca HOM05D003774 ORTHO05D010174 3.4e-26 123.2 103 64.1
AagrBONN_evm.TU.Sc2ySwM_340.403 Anthoceros agrestis HOM05D000737 ORTHO05D000581 4.5e-26 122.9 275 32.0
Lj7A284T38 Lonicera japonica HOM05D003774 ORTHO05D010174 4.9e-25 119.4 101 60.4
Os11g0219000 Oryza sativa ssp. japonica HOM05D003774 ORTHO05D010174 2.6e-18 97.1 84 60.7
MD15G1405700 Malus domestica HOM05D003774 ORTHO05D010174 1.0e-14 85.1 151 40.4
Cre16.g670500 Chlamydomonas reinhardtii HOM05D003774 ORTHO05D010174 3.4e-10 70.1 337 22.8
MCO03G373 Micromonas commoda HOM05D003774 ORTHO05D010174 5.9e-10 69.3 307 26.7
MBI03_g48045_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D010174 4.2e-08 63.2 49 71.4


User provided reference genes

Program Settings