Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 6.9e-23 109.8 55 100.0
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 1.2e-19 99.0 54 88.9
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 1.2e-19 99.0 54 88.9
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 1.1e-17 92.4 54 83.3
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 9.6e-17 89.4 53 79.2
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 1.3e-16 89.0 51 82.4
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 6.2e-16 86.7 56 76.8
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.1e-15 85.9 54 79.6
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 1.1e-15 85.9 53 77.4
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 1.1e-15 85.9 47 85.1
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 1.4e-15 85.5 53 75.5
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 1.8e-15 85.1 53 71.7
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 1.8e-15 85.1 54 72.2
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 2.4e-15 84.7 54 79.6
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 2.4e-15 84.7 53 73.6
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 4.0e-15 84.0 54 77.8
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 4.0e-15 84.0 54 75.9
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 4.0e-15 84.0 54 75.9
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 5.3e-15 83.6 58 70.7
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 6.9e-15 83.2 53 73.6
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 6.9e-15 83.2 51 76.5
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 9.0e-15 82.8 51 74.5
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 1.2e-14 82.4 53 69.8
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 1.2e-14 82.4 47 78.7
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 1.2e-14 82.4 54 74.1
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 1.5e-14 82.0 46 82.6
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 2.0e-14 81.6 53 71.7
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 2.0e-14 81.6 47 76.6
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 2.0e-14 81.6 51 72.5
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 2.0e-14 81.6 54 75.9
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 2.0e-14 81.6 53 71.7
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 2.0e-14 81.6 53 73.6
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 2.6e-14 81.3 53 73.6
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 2.6e-14 81.3 53 71.7
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 3.4e-14 80.9 58 70.7
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 3.4e-14 80.9 58 70.7
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 3.4e-14 80.9 51 74.5
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 3.4e-14 80.9 51 74.5
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 3.4e-14 80.9 51 74.5
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 4.5e-14 80.5 53 69.8
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 4.5e-14 80.5 53 73.6
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 4.5e-14 80.5 51 72.5
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 4.5e-14 80.5 51 68.6
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.5e-14 80.5 51 68.6
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 4.5e-14 80.5 53 71.7
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 4.5e-14 80.5 53 69.8
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 4.5e-14 80.5 53 71.7
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 5.8e-14 80.1 53 69.8
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 5.8e-14 80.1 53 69.8
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 1.0e-13 79.3 54 68.5
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 1.0e-13 79.3 53 71.7
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 1.0e-13 79.3 46 76.1
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 1.3e-13 79.0 51 72.5
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 1.3e-13 79.0 42 81.0
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 1.7e-13 78.6 51 74.5
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 2.2e-13 78.2 54 70.4
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.2e-13 78.2 52 67.3
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.2e-13 78.2 52 67.3
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 2.2e-13 78.2 55 72.7
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 2.9e-13 77.8 46 78.3
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 2.9e-13 77.8 53 69.8
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 3.8e-13 77.4 49 69.4
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 5.0e-13 77.0 55 69.1
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 5.0e-13 77.0 55 69.1
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 5.0e-13 77.0 54 68.5
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 5.0e-13 77.0 40 85.0
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 6.5e-13 76.6 52 67.3
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 6.5e-13 76.6 56 67.9
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 6.5e-13 76.6 53 67.9
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 8.4e-13 76.3 46 76.1
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 1.1e-12 75.9 53 66.0
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 1.1e-12 75.9 51 70.6
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 1.4e-12 75.5 55 70.9
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 1.4e-12 75.5 40 85.0
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 1.4e-12 75.5 41 82.9
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 1.9e-12 75.1 46 76.1
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 2.5e-12 74.7 52 65.4
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 3.2e-12 74.3 58 63.8
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 4.2e-12 73.9 51 60.8
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.2e-12 73.9 51 64.7
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.2e-12 73.9 52 65.4
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.2e-12 73.9 51 60.8
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 4.2e-12 73.9 43 79.1
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 4.2e-12 73.9 40 82.5
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 5.5e-12 73.6 53 66.0
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 7.1e-12 73.2 52 63.5
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 7.1e-12 73.2 42 71.4
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 7.1e-12 73.2 60 61.7
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 7.1e-12 73.2 55 67.3
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 9.3e-12 72.8 60 60.0
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 1.6e-11 72.0 58 62.1
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 2.1e-11 71.6 59 61.0
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 2.1e-11 71.6 59 61.0
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 2.1e-11 71.6 59 61.0
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 2.1e-11 71.6 59 61.0
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 2.1e-11 71.6 54 68.5
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 2.1e-11 71.6 39 82.1
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 2.7e-11 71.2 44 72.7
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 2.7e-11 71.2 50 68.0
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 2.7e-11 71.2 41 78.0
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 3.5e-11 70.9 50 66.0
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 3.5e-11 70.9 50 60.0
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.5e-11 70.9 50 60.0
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.5e-11 70.9 50 60.0
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 4.6e-11 70.5 48 64.6
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 7.9e-11 69.7 41 70.7
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 1.0e-10 69.3 50 58.0
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 2.3e-10 68.2 52 61.5
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 5.1e-10 67.0 54 61.1
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 5.1e-10 67.0 55 60.0
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 6.7e-10 66.6 51 62.7
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 1.5e-09 65.5 44 61.4
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 1.9e-09 65.1 53 56.6
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 9.7e-09 62.8 51 58.8
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.3e-08 62.4 37 73.0
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 2.8e-08 61.2 53 62.3
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 3.7e-08 60.8 32 84.4
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 1.4e-07 58.9 48 62.5
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 3.1e-07 57.8 38 65.8


User provided reference genes

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