Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012940 Carpinus fangiana HOM05D003905 ORTHO05D011420 0.0e+00 1786.5 923 100.0
Haze_21293 Corylus avellana HOM05D003905 ORTHO05D011420 0.0e+00 1647.9 923 92.7
QL02p026094 Quercus lobata HOM05D003905 ORTHO05D011420 0.0e+00 1163.3 924 68.8
RcHm_v2.0_Chr7g0228011 Rosa chinensis HOM05D003905 ORTHO05D011420 1.3e-193 681.0 907 48.3
Prupe.1G553900 Prunus persica HOM05D003905 ORTHO05D011420 9.0e-192 674.9 909 49.6
FAN18G0158 Fragaria x ananassa HOM05D003905 ORTHO05D011420 3.5e-188 662.9 911 47.4
FvH4_5g32010 Fragaria vesca HOM05D003905 ORTHO05D011420 1.5e-186 657.5 911 47.2
FAN08G2565 Fragaria x ananassa HOM05D003905 ORTHO05D011420 2.9e-182 643.3 911 46.5
FAN04G1043 Fragaria x ananassa HOM05D003905 ORTHO05D011420 1.1e-178 631.3 910 45.7
Duzib177G1174 Durio zibethinus HOM05D003905 ORTHO05D011420 1.8e-152 544.3 924 41.2
Manes.02G197000 Manihot esculenta HOM05D003905 ORTHO05D011420 3.6e-140 503.4 869 41.9
TAR624G0280 Trochodendron aralioides HOM05D003905 ORTHO05D011420 3.6e-132 476.9 832 41.3
TAR381G0253 Trochodendron aralioides HOM05D003905 ORTHO05D011420 4.6e-127 459.9 696 44.7
TAR624G1117 Trochodendron aralioides HOM05D003905 ORTHO05D011420 1.1e-125 455.3 864 39.8
Actinidia01556 Actinidia chinensis HOM05D003905 ORTHO05D011420 4.1e-104 383.6 949 34.4
ATR1134G065 Amborella trichopoda HOM05D003905 ORTHO05D005329 2.6e-58 231.5 641 33.1
Oeu006588.1 Olea europaea HOM05D019587 ORTHO05D011420 3.2e-56 224.6 876 29.2
SEGI_23721 Sequoiadendron giganteum HOM05D003905 ORTHO05D005329 4.4e-45 187.6 645 29.8
GSVIVG01034470001 Vitis vinifera HOM05D003905 ORTHO05D011420 1.6e-39 169.1 238 44.1
ATR0579G136 Amborella trichopoda HOM05D003905 ORTHO05D005329 4.1e-35 154.5 622 30.9
MBI05_g23390_MAGBIO Magnolia biondii HOM05D003905 ORTHO05D005329 4.1e-35 154.5 651 30.1
TAR376G0902 Trochodendron aralioides HOM05D003905 ORTHO05D005329 7.0e-35 153.7 883 27.0
Potri.005G241400 Populus trichocarpa HOM05D003905 ORTHO05D005329 1.3e-33 149.4 650 28.6
PSO541G2778 Papaver somniferum HOM05D003905 ORTHO05D005329 2.2e-33 148.7 763 27.1
Eucgr.H00969 Eucalyptus grandis HOM05D003905 ORTHO05D005329 7.2e-32 143.7 632 27.7
Glyma.17G258900 Glycine max HOM05D003905 ORTHO05D005329 1.6e-31 142.5 613 29.4
MBI10_g30419_MAGBIO Magnolia biondii HOM05D003905 ORTHO05D005329 3.6e-31 141.4 666 27.3
FvH4_2g38250 Fragaria vesca HOM05D003905 ORTHO05D005329 8.0e-31 140.2 643 29.2
Potri.002G020000 Populus trichocarpa HOM05D003905 ORTHO05D005329 1.0e-30 139.8 783 27.3
Glyma.14G219900 Glycine max HOM05D003905 ORTHO05D005329 1.4e-30 139.4 597 29.5
PSO675G3234 Papaver somniferum HOM05D003905 ORTHO05D005329 1.4e-30 139.4 849 27.2
CANSAT25G2239 Cannabis sativa HOM05D003905 ORTHO05D005329 1.8e-30 139.0 603 30.7
Duzib093G0852 Durio zibethinus HOM05D003905 ORTHO05D005329 1.8e-30 139.0 620 29.5
FAN20G1912 Fragaria x ananassa HOM05D003905 ORTHO05D005329 2.3e-30 138.7 640 29.1
Lj5g0002583 Lotus japonicus HOM05D003905 ORTHO05D005329 3.0e-30 138.3 630 29.0
MD15G1010900 Malus domestica HOM05D003905 ORTHO05D005329 3.0e-30 138.3 639 28.3
Sabra02G0016300 Salix brachista HOM05D003905 ORTHO05D005329 3.0e-30 138.3 618 28.8
Duzib041G0770 Durio zibethinus HOM05D003905 ORTHO05D005329 4.0e-30 137.9 614 27.5
TAR381G0315 Trochodendron aralioides HOM05D003905 ORTHO05D005329 4.0e-30 137.9 621 28.2
COL.COLO4_26128 Corchorus olitorius HOM05D003905 ORTHO05D005329 1.2e-29 136.3 869 26.4
RcHm_v2.0_Chr6g0303121 Rosa chinensis HOM05D003905 ORTHO05D005329 2.6e-29 135.2 644 29.5
Sabra05G0186900 Salix brachista HOM05D003905 ORTHO05D005329 3.4e-29 134.8 643 28.3
VMungo0647G0001 Vigna mungo HOM05D003905 ORTHO05D005329 3.4e-29 134.8 621 30.4
Manes.18G012100 Manihot esculenta HOM05D003905 ORTHO05D005329 4.4e-29 134.4 653 28.0
TAR381G1218 Trochodendron aralioides HOM05D003905 ORTHO05D005329 3.7e-28 131.3 621 28.0
Ciclev10000122m.g Citrus clementina HOM05D003905 ORTHO05D005329 8.3e-28 130.2 696 27.6
Duzib116G0388 Durio zibethinus HOM05D003905 ORTHO05D005329 1.2e-26 126.3 862 26.2
TPR.G26376 Trifolium pratense HOM05D003905 ORTHO05D005329 1.2e-26 126.3 622 27.8
Thecc.08G046500 Theobroma cacao HOM05D003905 ORTHO05D005329 4.5e-26 124.4 851 25.7
Manes.05G145700 Manihot esculenta HOM05D003905 ORTHO05D005329 5.9e-26 124.0 875 26.2
Lj5g0020561 Lotus japonicus HOM05D003905 ORTHO05D005329 1.3e-25 122.9 783 26.1
Cfa013971 Carpinus fangiana HOM05D003905 ORTHO05D005329 2.3e-25 122.1 804 27.5
Medtr1g025500 Medicago truncatula HOM05D003905 ORTHO05D005329 2.9e-25 121.7 674 27.2
TAR625G1519 Trochodendron aralioides HOM05D003905 ORTHO05D005329 8.6e-25 120.2 587 27.6
TWI56G0857 Tripterygium wilfordii HOM05D003905 ORTHO05D005329 1.5e-24 119.4 618 27.5
AUR62022648 Chenopodium quinoa HOM05D017651 ORTHO05D011420 1.9e-24 119.0 455 27.3
Hma1.2p1_0023F.1_g015570 Hydrangea macrophylla HOM05D003905 ORTHO05D005329 2.5e-24 118.6 707 26.7
Nn5g30748 Nelumbo nucifera HOM05D003905 ORTHO05D005329 2.5e-24 118.6 438 30.8
Dinv39531 Davidia involucrata HOM05D003905 ORTHO05D005329 3.3e-24 118.2 773 24.7
GSVIVG01024041001 Vitis vinifera HOM05D003905 ORTHO05D005329 4.2e-24 117.9 635 27.9
Ca_13435_v3 Cicer arietinum L. HOM05D003905 ORTHO05D005329 7.2e-24 117.1 599 26.9
Phvul.001G005400 Phaseolus vulgaris HOM05D003905 ORTHO05D005329 7.2e-24 117.1 932 25.9
Gorai.010G002900 Gossypium raimondii HOM05D003905 ORTHO05D005329 9.5e-24 116.7 576 28.8
Psat6g002200 Pisum sativum HOM05D003905 ORTHO05D005329 1.6e-23 115.9 622 28.9
CiPaw.07G148100 Carya illinoinensis HOM05D003905 ORTHO05D005329 2.1e-23 115.5 643 26.4
CsaV3_3G045950 Cucumis sativus L. HOM05D003905 ORTHO05D005329 2.1e-23 115.5 656 28.0
AUR62022647 Chenopodium quinoa HOM05D017651 ORTHO05D011420 4.7e-23 114.4 575 26.1
Gohir.D05G188500 Gossypium hirsutum HOM05D003905 ORTHO05D005329 4.7e-23 114.4 849 25.0
TWI12G0098 Tripterygium wilfordii HOM05D003905 ORTHO05D005329 4.7e-23 114.4 626 27.0
CSS0039596 Camellia sinensis var. sinensis HOM05D003905 ORTHO05D005329 6.1e-23 114.0 627 26.5
CiPaw.08G067200 Carya illinoinensis HOM05D003905 ORTHO05D005329 6.1e-23 114.0 859 25.5
MD08G1010900 Malus domestica HOM05D003905 ORTHO05D005329 6.1e-23 114.0 852 24.5
Atru.chr13.267 Acer truncatum HOM05D003905 ORTHO05D005329 1.8e-22 112.5 978 25.3
Prupe.1G363500 Prunus persica HOM05D003905 ORTHO05D005329 1.8e-22 112.5 942 25.2
Gohir.D06G005700 Gossypium hirsutum HOM05D003905 ORTHO05D005329 2.3e-22 112.1 576 28.1
Haze_00732 Corylus avellana HOM05D003905 ORTHO05D011420 5.2e-22 110.9 55 94.5
Nitab4.5_0000337g0040 Nicotiana tabacum HOM05D003905 ORTHO05D005329 5.2e-22 110.9 601 27.1
Gorai.009G193800 Gossypium raimondii HOM05D003905 ORTHO05D005329 8.9e-22 110.2 840 26.3
Aqoxy5G01812 Aquilegia oxysepala HOM05D003905 ORTHO05D005329 2.0e-21 109.0 756 25.7
CAN.G1925.3 Capsicum annuum HOM05D003905 ORTHO05D005329 2.0e-21 109.0 597 26.5
Gohir.A06G002700 Gossypium hirsutum HOM05D003905 ORTHO05D005329 4.4e-21 107.8 799 25.7
Sc23g0001460 Simmondsia chinensis HOM05D017651 ORTHO05D011420 1.3e-20 106.3 558 28.0
MSTRG.25260 Avicennia marina HOM05D003905 ORTHO05D005329 6.3e-20 104.0 600 26.2
Ah.11g039850 Amaranthus hybridus HOM05D003905 ORTHO05D005329 2.4e-19 102.1 606 27.2
EL10Ac1g02168 Beta vulgaris HOM05D003905 ORTHO05D005329 2.4e-19 102.1 816 26.1
Sed0006884 Sechium edule HOM05D003905 ORTHO05D005329 2.4e-19 102.1 617 27.2
Sopen12g031180 Solanum pennellii HOM05D003905 ORTHO05D005329 7.0e-19 100.5 610 25.6
AUR62035030 Chenopodium quinoa HOM05D003905 ORTHO05D005329 1.2e-18 99.8 610 27.0
AUR62040550 Chenopodium quinoa HOM05D003905 ORTHO05D005329 1.6e-18 99.4 611 26.7
ClCG05G018200 Citrullus lanatus HOM05D003905 ORTHO05D005329 4.5e-18 97.8 890 25.3
DCAR_016728 Daucus carota HOM05D003905 ORTHO05D005329 4.5e-18 97.8 912 23.9
Oeu014169.1 Olea europaea HOM05D003905 ORTHO05D005329 5.9e-18 97.4 629 27.7
Nitab4.5_0005970g0010 Nicotiana tabacum HOM05D003905 ORTHO05D005329 7.8e-18 97.1 602 27.9
Peaxi162Scf00553g00071 Petunia axillaris HOM05D003905 ORTHO05D005329 7.8e-18 97.1 603 28.5
Phvul.009G009400 Phaseolus vulgaris HOM05D003905 ORTHO05D005329 1.0e-17 96.7 658 26.7
MELO3C003744.2 Cucumis melo HOM05D003905 ORTHO05D005329 1.7e-17 95.9 918 25.3
Sed0012955 Sechium edule HOM05D003905 ORTHO05D005329 5.0e-17 94.4 496 28.8
PGSC0003DMG400029336 Solanum tuberosum HOM05D003905 ORTHO05D005329 5.0e-17 94.4 603 25.4
Sabra13G0112200 Salix brachista HOM05D003905 ORTHO05D005329 8.6e-17 93.6 380 30.3
TAR628G1379 Trochodendron aralioides HOM05D003905 ORTHO05D005329 1.1e-16 93.2 292 29.8
Cc10_g01500 Coffea canephora HOM05D003905 ORTHO05D005329 1.5e-16 92.8 678 25.1
EL10Ac1g00124 Beta vulgaris HOM05D017651 ORTHO05D011420 1.9e-16 92.4 475 27.2
MBI10_g30418_MAGBIO Magnolia biondii HOM05D003905 ORTHO05D011420 1.9e-16 92.4 197 36.0
AUR62004614 Chenopodium quinoa HOM05D017651 ORTHO05D011420 4.3e-16 91.3 386 27.2
Lalb_Chr11g0061811 Lupinus albus HOM05D003905 ORTHO05D005329 4.3e-16 91.3 757 23.9
Sc15g0004870 Simmondsia chinensis HOM05D003905 ORTHO05D005329 4.3e-16 91.3 599 27.7
unitig_8.g3383 Utricularia gibba HOM05D003905 ORTHO05D005329 5.6e-16 90.9 643 25.8
Oeu061973.1 Olea europaea HOM05D003905 ORTHO05D005329 7.3e-16 90.5 763 24.4
Dinv31863 Davidia involucrata HOM05D003905 ORTHO05D005329 9.5e-16 90.1 636 26.9
MSTRG.24238 Avicennia marina HOM05D003905 ORTHO05D005329 1.2e-15 89.7 617 25.1
Solyc12g089320.3 Solanum lycopersicum HOM05D003905 ORTHO05D005329 1.2e-15 89.7 401 27.4
VMungo1309G0723 Vigna mungo HOM05D003905 ORTHO05D005329 2.1e-15 89.0 616 25.8
SalBow7G0836 Salvia bowleyana HOM05D003905 ORTHO05D005329 2.8e-15 88.6 757 26.8
Glyma.06G023600 Glycine max HOM05D003905 ORTHO05D005329 3.6e-15 88.2 947 25.3
Lj4C798T8 Lonicera japonica HOM05D003905 ORTHO05D005329 4.7e-15 87.8 794 23.4
TWI36G1438 Tripterygium wilfordii HOM05D003905 ORTHO05D005329 6.1e-15 87.4 844 24.3
Gohir.A05G185700 Gossypium hirsutum HOM05D003905 ORTHO05D005329 1.0e-14 86.7 634 24.9
QL02p011991 Quercus lobata HOM05D003905 ORTHO05D005329 1.0e-14 86.7 942 23.8
Ah.05g178450 Amaranthus hybridus HOM05D017651 ORTHO05D011420 2.3e-14 85.5 452 26.3
MBI09_g14157_MAGBIO Magnolia biondii HOM05D003905 ORTHO05D005329 2.3e-14 85.5 839 25.5
CDE04G0614 Ceratophyllum demersum HOM05D003905 ORTHO05D005329 3.4e-13 81.6 785 24.2
Glyma.04G023600 Glycine max HOM05D003905 ORTHO05D005329 3.4e-13 81.6 999 24.7
Cpa.g.sc26.312 Carica papaya HOM05D003905 ORTHO05D005329 5.8e-13 80.9 304 30.6
Rhsim06G0019800 Rhododendron simsii HOM05D003905 ORTHO05D005329 9.8e-13 80.1 764 25.5
Migut.N03170 Erythranthe guttata HOM05D003905 ORTHO05D005329 1.3e-12 79.7 658 25.8
Actinidia16997 Actinidia chinensis HOM05D003905 ORTHO05D005329 1.7e-12 79.3 761 24.6
PGR042G1841 Punica granatum HOM05D003905 ORTHO05D011420 2.2e-12 79.0 455 25.1
unitig_22.g6796 Utricularia gibba HOM05D003905 ORTHO05D005329 2.2e-12 79.0 766 26.9
Nn6g32019 Nelumbo nucifera HOM05D003905 ORTHO05D005329 3.7e-12 78.2 500 26.0
DCAR_013879 Daucus carota HOM05D003905 ORTHO05D005329 2.4e-11 75.5 611 24.4
Lj4C22T7 Lonicera japonica HOM05D003905 ORTHO05D005329 2.4e-11 75.5 375 29.6
TAR381G1116 Trochodendron aralioides HOM05D003905 ORTHO05D011420 3.2e-11 75.1 255 30.6
C07p53520 Brassica napus HOM05D003905 ORTHO05D005329 4.1e-11 74.7 528 27.1
AUR62044752 Chenopodium quinoa HOM05D017651 ORTHO05D011420 7.0e-11 73.9 281 28.5
BolC7t45844H Brassica oleracea HOM05D003905 ORTHO05D005329 1.2e-10 73.2 521 26.3
AL7G29080 Arabidopsis lyrata HOM05D003905 ORTHO05D005329 7.8e-10 70.5 475 25.7
A03p55230 Brassica napus HOM05D003905 ORTHO05D005329 7.8e-10 70.5 494 25.5
BraA03t14582Z Brassica rapa HOM05D003905 ORTHO05D005329 7.8e-10 70.5 494 25.5
A03p55210 Brassica napus HOM05D003905 ORTHO05D005329 1.3e-09 69.7 526 25.5
BraA03t14580Z Brassica rapa HOM05D003905 ORTHO05D005329 1.3e-09 69.7 526 25.5
Thhalv10027094m.g Eutrema salsugineum HOM05D003905 ORTHO05D005329 3.0e-09 68.6 524 26.3
Nitab4.5_0003251g0050 Nicotiana tabacum HOM05D003905 ORTHO05D005329 3.9e-09 68.2 778 23.8
MSTRG.22343 Avicennia marina HOM05D003905 ORTHO05D005329 1.9e-08 65.9 986 22.7
AT4G24200 Arabidopsis thaliana HOM05D003905 ORTHO05D005329 2.5e-08 65.5 617 25.1
Oeu054487.1 Olea europaea HOM05D003905 ORTHO05D005329 2.5e-08 65.5 685 24.4
PSO700G0319 Papaver somniferum HOM05D003905 ORTHO05D005329 2.5e-08 65.5 612 22.7
THA.LOC104806874 Tarenaya hassleriana HOM05D003905 ORTHO05D005329 2.5e-08 65.5 514 25.9
GSVIVG01009936001 Vitis vinifera HOM05D003905 ORTHO05D005329 2.5e-08 65.5 331 26.3
CDE02G0563 Ceratophyllum demersum HOM05D003905 ORTHO05D005329 3.3e-08 65.1 561 24.8
PSO170G1273 Papaver somniferum HOM05D003905 ORTHO05D005329 1.6e-07 62.8 537 23.3
Oeu046285.1 Olea europaea HOM05D003905 ORTHO05D005329 2.8e-07 62.0 738 24.9
VMungo0464G1446 Vigna mungo HOM05D002487 ORTHO05D002748 1.1e-06 60.1 424 23.8
Oeu059192.1 Olea europaea HOM05D019587 ORTHO05D011420 2.3e-06 58.9 338 24.9
Os06g0631300 Oryza sativa ssp. japonica HOM05D003905 ORTHO05D005329 3.1e-06 58.5 592 24.5


User provided reference genes

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