Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 9.8e-42 172.9 81 100.0
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 3.0e-27 124.8 86 73.3
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 1.8e-24 115.5 69 71.0
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 7.0e-24 113.6 71 73.2
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 3.9e-22 107.8 71 69.0
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 3.9e-22 107.8 82 64.6
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 5.0e-22 107.5 69 69.6
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 8.6e-22 106.7 70 68.6
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 5.6e-21 104.0 69 68.1
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 5.6e-21 104.0 69 68.1
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 5.6e-21 104.0 69 68.1
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 9.5e-21 103.2 68 69.1
Potri.019G080600 Populus trichocarpa HOM05D007628 ORTHO05D007342 9.5e-21 103.2 70 65.7
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 1.6e-20 102.4 81 59.3
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 2.1e-20 102.1 69 66.7
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 8.0e-20 100.1 48 83.3
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 8.0e-20 100.1 50 80.0
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 1.1e-19 99.8 70 64.3
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 5.8e-18 94.0 65 66.2
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 1.7e-17 92.4 79 57.0
Duzib177G0741 Durio zibethinus HOM05D007628 ORTHO05D007342 2.2e-17 92.0 75 54.7
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 4.9e-17 90.9 75 57.3
Cc10_g10200 Coffea canephora HOM05D007628 ORTHO05D007342 6.4e-17 90.5 81 59.3
THA.LOC104800123 Tarenaya hassleriana HOM05D007628 ORTHO05D007342 1.9e-16 89.0 48 70.8
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 2.0e-15 85.5 74 56.8
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 3.5e-15 84.7 82 51.2
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 6.0e-15 84.0 70 54.3
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 6.0e-15 84.0 75 56.0
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 7.8e-15 83.6 74 56.8
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 7.8e-15 83.6 74 56.8
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 2.3e-14 82.0 79 48.1
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 5.0e-14 80.9 79 48.1
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 6.6e-14 80.5 70 54.3
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 6.6e-14 80.5 70 54.3
Cc10_g10180 Coffea canephora HOM05D013878 ORTHO05D007342 8.6e-14 80.1 68 55.9
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 1.1e-13 79.7 76 51.3
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 1.5e-13 79.3 82 51.2
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.9e-13 79.0 79 48.1
SHI05836 Sapria himalayana HOM05D007628 ORTHO05D007342 2.8e-12 75.1 49 65.3
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 8.1e-12 73.6 74 47.3
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 8.1e-12 73.6 74 45.9
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 1.8e-11 72.4 73 47.9
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.8e-11 72.4 73 47.9
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 3.1e-11 71.6 68 47.1
CSS0046525 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 3.1e-11 71.6 51 51.0
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 6.8e-11 70.5 74 45.9
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 6.8e-11 70.5 74 44.6
Rhsim11G0055100 Rhododendron simsii HOM05D007628 ORTHO05D007342 8.9e-11 70.1 51 62.7
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 8.9e-11 70.1 74 47.3
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 8.9e-11 70.1 67 53.7
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 1.5e-10 69.3 68 47.1
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 1.5e-10 69.3 69 46.4
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.0e-10 68.9 74 45.9
CSS0008166 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 2.6e-10 68.6 50 54.0
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 2.6e-10 68.6 77 46.8
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 4.4e-10 67.8 72 47.2
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 4.4e-10 67.8 81 39.5
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 5.8e-10 67.4 78 43.6
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 1.3e-09 66.2 71 39.4
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 1.3e-09 66.2 51 60.8
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 1.3e-09 66.2 70 50.0
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 1.7e-09 65.9 79 44.3
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 1.7e-09 65.9 79 44.3
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 1.7e-09 65.9 79 43.0
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 1.7e-09 65.9 62 53.2
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 2.2e-09 65.5 77 44.2
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.2e-09 65.5 76 43.4
Cc10_g10210 Coffea canephora HOM05D007628 ORTHO05D007342 2.9e-09 65.1 78 44.9
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.9e-09 65.1 73 45.2
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.9e-09 65.1 73 45.2
Rhsim06G0114400 Rhododendron simsii HOM05D007628 ORTHO05D007342 2.9e-09 65.1 81 43.2
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 3.7e-09 64.7 68 47.1
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 6.4e-09 63.9 77 42.9
Cc00_g22140 Coffea canephora HOM05D007628 ORTHO05D007342 6.4e-09 63.9 78 44.9
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 6.4e-09 63.9 62 53.2
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.1e-08 63.2 79 46.8
PGSC0003DMG400002110 Solanum tuberosum HOM05D008200 ORTHO05D007342 2.4e-08 62.0 79 45.6
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 3.2e-08 61.6 74 45.9
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 3.2e-08 61.6 69 49.3
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 3.2e-08 61.6 69 46.4
Ah.09g230940 Amaranthus hybridus HOM05D007628 ORTHO05D007342 4.1e-08 61.2 48 54.2
PGSC0003DMG400024075 Solanum tuberosum HOM05D008200 ORTHO05D007342 4.1e-08 61.2 79 45.6
EL10Ac1g00115 Beta vulgaris HOM05D007628 ORTHO05D007342 5.4e-08 60.8 76 42.1
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 7.1e-08 60.5 70 44.3
Peaxi162Scf00391g00730 Petunia axillaris HOM05D008200 ORTHO05D007342 9.2e-08 60.1 78 50.0
Solyc03g031895.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 9.2e-08 60.1 79 45.6
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 1.2e-07 59.7 43 58.1
Haze_21294 Corylus avellana HOM05D007628 ORTHO05D007342 1.6e-07 59.3 75 41.3
MBI02_g08723_MAGBIO Magnolia biondii HOM05D007628 ORTHO05D007342 1.6e-07 59.3 36 66.7
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 1.6e-07 59.3 75 45.3
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 2.7e-07 58.5 70 44.3
CAN.G201.40 Capsicum annuum HOM05D008200 ORTHO05D007342 3.5e-07 58.2 79 45.6
Peaxi162Scf00071g00049 Petunia axillaris HOM05D008200 ORTHO05D007342 6.0e-07 57.4 79 41.8
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 7.8e-07 57.0 79 43.0
Hund27101 Selenicereus undatus HOM05D007628 ORTHO05D007342 7.8e-07 57.0 78 37.2
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 1.0e-06 56.6 48 54.2
Peaxi162Scf00391g00074 Petunia axillaris HOM05D008200 ORTHO05D007342 3.9e-06 54.7 64 50.0
SalBow7G0776 Salvia bowleyana HOM05D007628 ORTHO05D007342 3.9e-06 54.7 44 56.8
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 8.6e-06 53.5 77 41.6


User provided reference genes

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