Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 2.6e-183 645.2 315 100.0
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 9.9e-175 616.7 322 95.7
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 1.4e-168 596.3 315 91.1
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 4.9e-166 587.8 315 89.5
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 6.5e-166 587.4 315 90.2
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 4.2e-165 584.7 315 90.2
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 2.7e-164 582.0 315 88.6
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 3.5e-164 581.6 315 89.2
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 4.6e-164 581.3 315 88.3
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 1.0e-163 580.1 314 88.9
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 1.3e-163 579.7 315 88.9
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 5.1e-163 577.8 315 87.9
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 2.5e-162 575.5 315 87.6
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 2.5e-162 575.5 315 87.6
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 3.3e-162 575.1 314 88.2
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 5.7e-162 574.3 315 88.9
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.3e-161 573.2 315 88.6
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 1.6e-161 572.8 313 87.5
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 2.1e-161 572.4 315 87.9
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 2.8e-161 572.0 315 87.6
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 1.4e-160 569.7 315 87.9
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 1.8e-160 569.3 316 88.0
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 3.1e-160 568.5 315 87.6
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 5.3e-160 567.8 315 88.9
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 5.3e-160 567.8 315 87.0
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 9.0e-160 567.0 315 87.0
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 9.0e-160 567.0 330 84.5
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 1.2e-159 566.6 315 87.6
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 1.5e-159 566.2 315 85.7
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 1.5e-159 566.2 315 87.3
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 1.5e-159 566.2 316 87.3
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 1.5e-159 566.2 315 87.0
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 2.0e-159 565.8 315 87.0
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 2.0e-159 565.8 316 88.0
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 3.4e-159 565.1 316 88.0
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 7.6e-159 563.9 313 86.3
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 7.6e-159 563.9 315 86.0
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 7.6e-159 563.9 317 87.7
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 7.6e-159 563.9 314 87.3
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 1.0e-158 563.5 315 86.3
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 1.0e-158 563.5 313 86.6
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 1.0e-158 563.5 316 87.0
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 2.2e-158 562.4 315 86.7
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 2.9e-158 562.0 315 86.0
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 3.8e-158 561.6 315 86.3
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 8.5e-158 560.5 316 87.3
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 8.5e-158 560.5 338 81.7
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 8.5e-158 560.5 315 85.1
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 8.5e-158 560.5 315 86.7
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 1.1e-157 560.1 315 85.7
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 1.1e-157 560.1 315 86.0
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.9e-157 559.3 315 85.7
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 2.5e-157 558.9 316 85.1
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 5.5e-157 557.8 316 86.4
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 5.5e-157 557.8 316 86.4
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 1.2e-156 556.6 315 85.4
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 2.1e-156 555.8 315 85.1
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 2.7e-156 555.4 315 86.7
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 6.1e-156 554.3 316 84.5
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 7.9e-156 553.9 315 84.1
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 7.9e-156 553.9 316 85.4
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 7.9e-156 553.9 315 84.4
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 1.0e-155 553.5 316 86.4
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 1.8e-155 552.7 315 85.1
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 1.8e-155 552.7 315 85.1
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 2.3e-155 552.4 317 85.2
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 2.3e-155 552.4 315 85.7
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 3.0e-155 552.0 315 84.8
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 3.0e-155 552.0 314 84.7
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 1.1e-154 550.1 315 85.4
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 1.9e-154 549.3 309 86.1
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 1.9e-154 549.3 317 84.9
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 4.3e-154 548.1 314 83.8
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 7.4e-154 547.4 315 84.4
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 9.7e-154 547.0 315 84.1
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 3.7e-153 545.0 315 83.8
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 3.7e-153 545.0 314 83.4
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 8.2e-153 543.9 315 82.5
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 1.1e-152 543.5 314 82.8
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 1.4e-152 543.1 314 82.5
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 1.4e-152 543.1 315 81.9
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 1.8e-152 542.7 314 84.1
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 2.6e-151 538.9 315 85.1
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 5.9e-151 537.7 312 83.3
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 2.9e-150 535.4 315 83.5
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 1.1e-149 533.5 319 79.9
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 1.4e-149 533.1 315 80.6
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 4.2e-149 531.6 316 82.6
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 4.2e-149 531.6 383 72.1
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 7.2e-149 530.8 315 80.6
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 1.2e-148 530.0 316 82.6
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 7.9e-148 527.3 306 83.3
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 7.9e-148 527.3 339 77.0
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 1.0e-147 526.9 309 82.5
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 1.8e-147 526.2 315 82.5
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 2.3e-147 525.8 317 82.3
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.3e-147 525.8 317 82.6
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.3e-147 525.8 317 82.3
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 3.9e-147 525.0 326 80.7
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 3.9e-147 525.0 317 82.0
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 3.9e-147 525.0 317 82.3
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 6.7e-147 524.2 317 82.0
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 6.7e-147 524.2 317 82.0
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 2.6e-146 522.3 314 81.2
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 5.7e-146 521.2 317 83.0
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 1.3e-145 520.0 317 81.1
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 1.7e-145 519.6 310 80.6
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 8.2e-145 517.3 315 81.9
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 4.1e-144 515.0 322 79.8
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 2.0e-143 512.7 309 81.6
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 4.5e-143 511.5 318 80.8
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 2.9e-142 508.8 285 85.3
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 3.9e-139 498.4 288 83.3
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 3.9e-139 498.4 318 79.2
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 6.7e-139 497.7 315 79.4
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 9.7e-138 493.8 282 84.0
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 1.7e-137 493.0 283 83.7
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 3.7e-137 491.9 314 78.7
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 6.3e-137 491.1 313 78.9
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 1.8e-136 489.6 315 77.8
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 2.4e-136 489.2 463 58.3
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 7.0e-136 487.6 294 77.9
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 3.5e-135 485.3 314 78.0
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 1.0e-134 483.8 314 77.7
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 2.5e-133 479.2 320 72.5
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 2.2e-129 466.1 310 73.5
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 1.4e-128 463.4 313 73.8
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 4.7e-124 448.4 318 70.1
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 5.7e-122 441.4 240 87.9
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 5.7e-122 441.4 313 68.4
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 5.0e-118 428.3 262 80.9
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 3.2e-117 425.6 284 72.2
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 8.0e-116 421.0 314 67.2
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 4.0e-99 365.5 213 80.8
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 7.3e-85 318.2 173 86.7
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.1e-83 314.3 177 84.2
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 8.9e-83 311.2 252 61.5
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 1.5e-77 293.9 191 75.4
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 5.4e-72 275.4 309 48.9
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 1.6e-71 273.9 305 48.9
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 5.6e-69 265.4 166 77.7
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 6.2e-68 261.9 151 80.8
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 6.2e-68 261.9 151 80.8
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 6.9e-67 258.5 273 50.2
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 4.5e-66 255.8 168 70.8
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 1.3e-60 237.7 277 50.9
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 1.4e-59 234.2 186 65.1
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 5.8e-58 228.8 300 42.7
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 2.7e-55 219.9 112 91.1
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 7.9e-55 218.4 308 41.6
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 2.3e-54 216.9 182 59.9
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 1.0e-49 201.4 301 44.9
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 7.1e-48 195.3 149 68.5
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.8e-46 190.7 142 68.3
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 3.0e-46 189.9 129 69.8
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 5.7e-45 185.7 113 76.1
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 5.7e-45 185.7 113 76.1
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 4.8e-44 182.6 113 75.2
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 8.2e-44 181.8 139 67.6
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 4.1e-43 179.5 103 81.6
Rhsim11G0131000 Rhododendron simsii HOM05D003935 ORTHO05D005096 9.0e-43 178.3 179 55.9
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 2.9e-41 173.3 168 53.6
Rhsim06G0096100 Rhododendron simsii HOM05D003935 ORTHO05D005096 7.4e-37 158.7 116 69.8
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 1.2e-34 151.4 277 34.3
BcaB01g00746 Brassica carinata HOM05D003935 ORTHO05D005096 1.9e-32 144.1 108 67.6
BcaC04g19029 Brassica carinata HOM05D003935 ORTHO05D005096 1.4e-30 137.9 114 62.3
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 7.0e-27 125.6 68 83.8
A09p20840 Brassica napus HOM05D000772 ORTHO05D003239 1.0e-25 121.7 80 75.0
BraA09t37687Z Brassica rapa HOM05D000772 ORTHO05D003239 1.0e-25 121.7 80 75.0
MD07G1099000 Malus domestica HOM05D003935 ORTHO05D005096 5.0e-25 119.4 60 93.3
CBR_g28077 Chara braunii HOM05D003935 ORTHO05D005096 6.7e-22 109.0 72 69.4
Actinidia10778 Actinidia chinensis HOM05D003935 ORTHO05D005096 3.3e-21 106.7 90 65.6
arahy.Tifrunner.gnm1.ann1.W2J7UU Arachis hypogaea HOM05D003935 ORTHO05D023770 3.1e-19 100.1 53 88.7
Lj9A23G20 Lonicera japonica HOM05D000092 ORTHO05D000042 4.5e-18 96.3 117 43.6
C03p26610 Brassica napus HOM05D003935 ORTHO05D023770 1.7e-17 94.4 53 83.0
Rhsim12G0075300 Rhododendron simsii HOM05D016728 ORTHO05D338590 1.9e-16 90.9 102 52.9
SalBow2G0135 Salvia bowleyana HOM05D003935 ORTHO05D357983 4.2e-16 89.7 47 87.2
Zm00001eb269920 Zea mays HOM05D001580 ORTHO05D001517 1.5e-13 81.3 52 75.0
BcaC03g17887 Brassica carinata HOM05D003935 ORTHO05D005096 3.8e-09 66.6 44 70.5
Zm00001eb395010 Zea mays HOM05D034860 ORTHO05D442630 4.7e-07 59.7 37 62.2
Zm00001eb363380 Zea mays HOM05D003935 ORTHO05D445556 4.0e-06 56.6 37 59.5
BcaC02g10492 Brassica carinata HOM05D036142 ORTHO05D023770 5.2e-06 56.2 33 78.8
C04p28240 Brassica napus HOM05D036142 ORTHO05D023770 5.2e-06 56.2 33 78.8
BolC4t24369H Brassica oleracea HOM05D036142 ORTHO05D023770 5.2e-06 56.2 33 78.8
Glyma.12G161000 Glycine max HOM05D000557 ORTHO05D212538 6.8e-06 55.8 46 56.5


User provided reference genes

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