Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012913 Carpinus fangiana HOM05D001486 ORTHO05D011772 7.5e-26 119.8 62 100.0
Prupe.1G333200 Prunus persica HOM05D001486 ORTHO05D003845 4.9e-09 63.9 40 85.0
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 1.4e-08 62.4 40 82.5
COL.COLO4_16587 Corchorus olitorius HOM05D001486 ORTHO05D011772 2.4e-08 61.6 40 82.5
DCAR_030270 Daucus carota HOM05D001486 ORTHO05D003845 2.4e-08 61.6 41 78.0
Thecc.02G292300 Theobroma cacao HOM05D001486 ORTHO05D003845 2.4e-08 61.6 40 82.5
MD13G1020500 Malus domestica HOM05D001486 ORTHO05D003845 3.2e-08 61.2 40 80.0
RcHm_v2.0_Chr4g0443071 Rosa chinensis HOM05D001486 ORTHO05D003845 3.2e-08 61.2 40 80.0
Haze_10882 Corylus avellana HOM05D001486 ORTHO05D003845 4.1e-08 60.8 38 86.8
Dinv10476 Davidia involucrata HOM05D001486 ORTHO05D003845 4.1e-08 60.8 38 86.8
Gohir.A01G147000 Gossypium hirsutum HOM05D001486 ORTHO05D003845 4.1e-08 60.8 38 86.8
Gohir.D01G140100 Gossypium hirsutum HOM05D001486 ORTHO05D003845 4.1e-08 60.8 38 86.8
Gorai.002G172300 Gossypium raimondii HOM05D001486 ORTHO05D003845 4.1e-08 60.8 38 86.8
QL03p035767 Quercus lobata HOM05D001486 ORTHO05D003845 4.1e-08 60.8 38 86.8
Manes.17G083800 Manihot esculenta HOM05D001486 ORTHO05D003845 5.4e-08 60.5 38 84.2
Sc11g0004160 Simmondsia chinensis HOM05D001486 ORTHO05D003845 5.4e-08 60.5 38 84.2
TAR629G1492 Trochodendron aralioides HOM05D001486 ORTHO05D003845 5.4e-08 60.5 40 80.0
DCAR_005364 Daucus carota HOM05D001486 ORTHO05D011772 7.1e-08 60.1 39 82.1
DCAR_007328 Daucus carota HOM05D001486 ORTHO05D003845 7.1e-08 60.1 39 82.1
Duzib268G0262 Durio zibethinus HOM05D001486 ORTHO05D003845 7.1e-08 60.1 40 80.0
Migut.E00480 Erythranthe guttata HOM05D001486 ORTHO05D003845 7.1e-08 60.1 39 82.1
HanXRQChr15g0476741 Helianthus annuus HOM05D001486 ORTHO05D003845 7.1e-08 60.1 39 82.1
Lsat_1_v5_gn_3_53381 Lactuca sativa HOM05D001486 ORTHO05D003845 7.1e-08 60.1 39 82.1
Lj3C864T11 Lonicera japonica HOM05D001486 ORTHO05D003845 7.1e-08 60.1 38 84.2
MD16G1018900 Malus domestica HOM05D001486 ORTHO05D003845 7.1e-08 60.1 39 82.1
Gohir.A05G308900 Gossypium hirsutum HOM05D001486 ORTHO05D003845 9.2e-08 59.7 40 77.5
Gohir.D05G309600 Gossypium hirsutum HOM05D001486 ORTHO05D003845 9.2e-08 59.7 40 77.5
Gorai.008G168200 Gossypium raimondii HOM05D001486 ORTHO05D003845 9.2e-08 59.7 40 80.0
Gorai.009G330200 Gossypium raimondii HOM05D001486 ORTHO05D003845 9.2e-08 59.7 40 77.5
Oeu031609.1 Olea europaea HOM05D001486 ORTHO05D003845 9.2e-08 59.7 38 84.2
EL10Ac6g14120 Beta vulgaris HOM05D001486 ORTHO05D003845 1.2e-07 59.3 38 81.6
Cfa015023 Carpinus fangiana HOM05D001486 ORTHO05D003845 1.2e-07 59.3 38 84.2
ClCG07G005650 Citrullus lanatus HOM05D001486 ORTHO05D003845 1.2e-07 59.3 40 80.0
MELO3C034497.2 Cucumis melo HOM05D001486 ORTHO05D011772 1.2e-07 59.3 40 80.0
CsaV3_5G036990 Cucumis sativus L. HOM05D001486 ORTHO05D003845 1.2e-07 59.3 40 80.0
Hma1.2p1_0705F.1_g206960 Hydrangea macrophylla HOM05D001486 ORTHO05D003845 1.2e-07 59.3 38 81.6
Lj4g0000437 Lotus japonicus HOM05D001486 ORTHO05D003845 1.2e-07 59.3 40 75.0
MBI19_g37990_MAGBIO Magnolia biondii HOM05D001486 ORTHO05D003845 1.2e-07 59.3 38 81.6
Manes.15G134100 Manihot esculenta HOM05D001486 ORTHO05D003845 1.2e-07 59.3 38 84.2
Oeu059515.2 Olea europaea HOM05D001486 ORTHO05D003845 1.2e-07 59.3 38 84.2
SalBow2G3384 Salvia bowleyana HOM05D001486 ORTHO05D003845 1.2e-07 59.3 38 81.6
Sc14g0006830 Simmondsia chinensis HOM05D001486 ORTHO05D003845 1.2e-07 59.3 38 84.2
TAR371G0986 Trochodendron aralioides HOM05D001486 ORTHO05D003845 1.2e-07 59.3 38 81.6
Duzib251G0612 Durio zibethinus HOM05D001486 ORTHO05D003845 1.6e-07 58.9 40 77.5
FAN17G1742 Fragaria x ananassa HOM05D001486 ORTHO05D003845 1.6e-07 58.9 39 79.5
Nn3g18359 Nelumbo nucifera HOM05D001486 ORTHO05D003845 1.6e-07 58.9 38 78.9
Sed0013183 Sechium edule HOM05D001486 ORTHO05D003845 1.6e-07 58.9 39 82.1
SGA_v2.0_scaffold151G36774 Striga asiatica HOM05D001486 ORTHO05D003845 1.6e-07 58.9 38 81.6
HPP92_020315 Vanilla planifolia HOM05D001486 ORTHO05D003845 1.6e-07 58.9 38 84.2
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 2.1e-07 58.5 38 84.2
CSS0002688 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D003845 2.1e-07 58.5 38 84.2
CSS0045072 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D003845 2.1e-07 58.5 38 84.2
Cpa.g.sc2.195 Carica papaya HOM05D001486 ORTHO05D003845 2.1e-07 58.5 38 84.2
Duzib248G0925 Durio zibethinus HOM05D001486 ORTHO05D003845 2.1e-07 58.5 40 80.0
FvH4_4g33570 Fragaria vesca HOM05D001486 ORTHO05D003845 2.1e-07 58.5 39 76.9
FAN12G1020 Fragaria x ananassa HOM05D001486 ORTHO05D003845 2.1e-07 58.5 39 76.9
FAN22G2360 Fragaria x ananassa HOM05D001486 ORTHO05D003845 2.1e-07 58.5 39 76.9
Glyma.02G085000 Glycine max HOM05D001486 ORTHO05D003845 2.1e-07 58.5 38 81.6
Glyma.07G169700 Glycine max HOM05D001486 ORTHO05D003845 2.1e-07 58.5 38 81.6
Gohir.A04G142700 Gossypium hirsutum HOM05D001486 ORTHO05D003845 2.1e-07 58.5 41 75.6
Gohir.D04G186000 Gossypium hirsutum HOM05D001486 ORTHO05D003845 2.1e-07 58.5 41 75.6
Gorai.012G182400 Gossypium raimondii HOM05D001486 ORTHO05D003845 2.1e-07 58.5 41 75.6
Atru.chr11.926 Acer truncatum HOM05D001486 ORTHO05D003845 2.7e-07 58.2 38 81.6
CiPaw.06G051700 Carya illinoinensis HOM05D001486 ORTHO05D003845 2.7e-07 58.2 38 84.2
AUR62014245 Chenopodium quinoa HOM05D001486 ORTHO05D003845 2.7e-07 58.2 38 78.9
Ca_12547_v3 Cicer arietinum L. HOM05D001486 ORTHO05D003845 2.7e-07 58.2 40 75.0
ECA246G1671 Erigeron canadensis HOM05D001486 ORTHO05D000001 2.7e-07 58.2 39 79.5
Glyma.08G045800 Glycine max HOM05D001486 ORTHO05D003845 2.7e-07 58.2 40 72.5
HanXRQChr17g0567281 Helianthus annuus HOM05D001486 ORTHO05D003845 2.7e-07 58.2 39 79.5
Phvul.002G321100 Phaseolus vulgaris HOM05D001486 ORTHO05D003845 2.7e-07 58.2 40 72.5
Hund20676 Selenicereus undatus HOM05D001486 ORTHO05D011772 2.7e-07 58.2 38 84.2
vmacro10692 Vaccinium macrocarpon HOM05D001486 ORTHO05D003845 2.7e-07 58.2 38 81.6
Aqoxy3G00010 Aquilegia oxysepala HOM05D001486 ORTHO05D003845 3.5e-07 57.8 38 76.3
Cc11_g07270 Coffea canephora HOM05D001486 ORTHO05D003845 3.5e-07 57.8 38 81.6
Lsat_1_v5_gn_4_12500 Lactuca sativa HOM05D001486 ORTHO05D003845 3.5e-07 57.8 39 76.9
Lj2g0001507 Lotus japonicus HOM05D001486 ORTHO05D003845 3.5e-07 57.8 40 72.5
Oeu044011.1 Olea europaea HOM05D001486 ORTHO05D011772 3.5e-07 57.8 38 81.6
Os03g0223700 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D003845 3.5e-07 57.8 39 74.4
HPP92_024794 Vanilla planifolia HOM05D001486 ORTHO05D003845 3.5e-07 57.8 38 78.9
Zm00001eb399850 Zea mays HOM05D001486 ORTHO05D003845 3.5e-07 57.8 39 74.4
Actinidia34036 Actinidia chinensis HOM05D001486 ORTHO05D003845 4.6e-07 57.4 38 81.6
CSS0022032 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D011772 4.6e-07 57.4 38 78.9
CSS0024241 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D003845 4.6e-07 57.4 38 78.9
CSS0044357 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D011772 4.6e-07 57.4 38 78.9
Ciclev10014409m.g Citrus clementina HOM05D001486 ORTHO05D003845 4.6e-07 57.4 38 78.9
ECA233G3229 Erigeron canadensis HOM05D001486 ORTHO05D003845 4.6e-07 57.4 39 76.9
Gohir.A12G152100 Gossypium hirsutum HOM05D001486 ORTHO05D003845 4.6e-07 57.4 40 77.5
Lalb_Chr16g0387531 Lupinus albus HOM05D001486 ORTHO05D003845 4.6e-07 57.4 40 72.5
Nn4g24361 Nelumbo nucifera HOM05D001486 ORTHO05D003845 4.6e-07 57.4 38 78.9
TWI77G0357 Tripterygium wilfordii HOM05D001486 ORTHO05D003845 4.6e-07 57.4 38 81.6
Lsat_1_v5_gn_8_46261 Lactuca sativa HOM05D001486 ORTHO05D003845 6.0e-07 57.0 39 76.9
Lalb_Chr09g0330901 Lupinus albus HOM05D001486 ORTHO05D003845 6.0e-07 57.0 40 72.5
MBI13_g46817_MAGBIO Magnolia biondii HOM05D001486 ORTHO05D003845 6.0e-07 57.0 38 76.3
Medtr1g032110 Medicago truncatula HOM05D001486 ORTHO05D003845 6.0e-07 57.0 40 72.5
Nitab4.5_0002414g0110 Nicotiana tabacum HOM05D001486 ORTHO05D003845 6.0e-07 57.0 39 74.4
Nitab4.5_0002803g0060 Nicotiana tabacum HOM05D001486 ORTHO05D003845 6.0e-07 57.0 39 74.4
SHI04318 Sapria himalayana HOM05D001486 ORTHO05D003845 6.0e-07 57.0 38 78.9
Hund24926 Selenicereus undatus HOM05D001486 ORTHO05D003845 6.0e-07 57.0 38 76.3
CiPaw.05G189200 Carya illinoinensis HOM05D001486 ORTHO05D003845 7.8e-07 56.6 38 78.9
CDE04G2443 Ceratophyllum demersum HOM05D001486 ORTHO05D003845 7.8e-07 56.6 41 68.3
Hma1.2p1_0940F.1_g239590 Hydrangea macrophylla HOM05D001486 ORTHO05D011772 7.8e-07 56.6 37 81.1
Hma1.2p1_0940F.1_g239595 Hydrangea macrophylla HOM05D001486 ORTHO05D011772 7.8e-07 56.6 37 81.1
PSO063G0325 Papaver somniferum HOM05D001486 ORTHO05D003845 7.8e-07 56.6 38 76.3
PSO782G0639 Papaver somniferum HOM05D001486 ORTHO05D003845 7.8e-07 56.6 38 76.3
Peaxi162Scf00337g00815 Petunia axillaris HOM05D001486 ORTHO05D003845 7.8e-07 56.6 39 74.4
Psat6g046320 Pisum sativum HOM05D001486 ORTHO05D003845 7.8e-07 56.6 40 72.5
TPR.G36922 Trifolium pratense HOM05D001486 ORTHO05D003845 7.8e-07 56.6 40 72.5
CSS0030809 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D011772 1.0e-06 56.2 38 76.3
Rhsim09G0089600 Rhododendron simsii HOM05D001486 ORTHO05D003845 1.0e-06 56.2 38 78.9
CSS0033625 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D011772 1.3e-06 55.8 38 76.3
CAN.G74.5 Capsicum annuum HOM05D001486 ORTHO05D003845 1.3e-06 55.8 39 74.4
Lalb_Chr04g0258641 Lupinus albus HOM05D001486 ORTHO05D003845 1.3e-06 55.8 38 76.3
PGR142G0042 Punica granatum HOM05D001486 ORTHO05D003845 1.3e-06 55.8 38 73.7
Solyc04g008010.4 Solanum lycopersicum HOM05D001486 ORTHO05D003845 1.3e-06 55.8 39 74.4
Sopen04g003150 Solanum pennellii HOM05D001486 ORTHO05D003845 1.3e-06 55.8 39 74.4
PGSC0003DMG401029470 Solanum tuberosum HOM05D001486 ORTHO05D003845 1.3e-06 55.8 39 74.4
VMungo0251G2427 Vigna mungo HOM05D001486 ORTHO05D003845 1.3e-06 55.8 38 73.7
VMungo1215G0637 Vigna mungo HOM05D001486 ORTHO05D003845 1.3e-06 55.8 40 72.5
Zm00001eb009100 Zea mays HOM05D001486 ORTHO05D003845 1.3e-06 55.8 37 75.7
Lalb_Chr10g0095721 Lupinus albus HOM05D001486 ORTHO05D003845 1.7e-06 55.5 38 73.7
TPR.G19247 Trifolium pratense HOM05D001486 ORTHO05D003845 1.7e-06 55.5 39 74.4
HanXRQChr08g0212491 Helianthus annuus HOM05D001486 ORTHO05D003845 2.3e-06 55.1 39 71.8
Medtr8g105270 Medicago truncatula HOM05D001486 ORTHO05D003845 2.3e-06 55.1 40 70.0
Nitab4.5_0005073g0010 Nicotiana tabacum HOM05D001486 ORTHO05D003845 2.3e-06 55.1 36 80.6
Peaxi162Scf00376g00836 Petunia axillaris HOM05D001486 ORTHO05D003845 2.3e-06 55.1 36 80.6
Ah.03g137420 Amaranthus hybridus HOM05D001486 ORTHO05D003845 3.0e-06 54.7 38 71.1
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 3.0e-06 54.7 38 76.3
TWI74G0058 Tripterygium wilfordii HOM05D001486 ORTHO05D003845 3.0e-06 54.7 38 78.9
Zm00001eb223660 Zea mays HOM05D001486 ORTHO05D011772 3.0e-06 54.7 37 75.7
MSTRG.13626 Avicennia marina HOM05D001486 ORTHO05D003845 3.9e-06 54.3 38 76.3
Glyma.05G238700 Glycine max HOM05D001486 ORTHO05D003845 3.9e-06 54.3 38 71.1
GSVIVG01011664001 Vitis vinifera HOM05D001486 ORTHO05D003845 3.9e-06 54.3 36 80.6
Aa31LG2G8200 Aethionema arabicum HOM05D001486 ORTHO05D003845 5.1e-06 53.9 40 70.0
ATR0753G082 Amborella trichopoda HOM05D001486 ORTHO05D003845 5.1e-06 53.9 37 75.7
MSTRG.2129 Avicennia marina HOM05D001486 ORTHO05D003845 5.1e-06 53.9 39 71.8
CAN.G406.6 Capsicum annuum HOM05D001486 ORTHO05D003845 5.1e-06 53.9 36 77.8
TWI53G1320 Tripterygium wilfordii HOM05D001486 ORTHO05D003845 5.1e-06 53.9 40 72.5
Ca_17256_v3 Cicer arietinum L. HOM05D001486 ORTHO05D003845 6.6e-06 53.5 38 73.7
Ca_17278_v3 Cicer arietinum L. HOM05D001486 ORTHO05D003845 6.6e-06 53.5 38 73.7
Psat7g008000 Pisum sativum HOM05D001486 ORTHO05D003845 6.6e-06 53.5 40 70.0
AagrBONN_evm.TU.Sc2ySwM_228.2276 Anthoceros agrestis HOM05D001486 ORTHO05D003845 8.6e-06 53.1 41 65.9
CANSAT01G1659 Cannabis sativa HOM05D001486 ORTHO05D003845 8.6e-06 53.1 40 67.5
CDE06G2592 Ceratophyllum demersum HOM05D001486 ORTHO05D003845 8.6e-06 53.1 41 65.9


User provided reference genes

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