Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 7.0e-212 740.3 371 100.0
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 1.2e-179 633.3 380 87.4
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 1.6e-168 596.3 342 89.8
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 2.0e-134 483.0 398 66.8
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 2.6e-105 386.3 208 92.8
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.4e-95 354.0 440 51.4
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 2.4e-95 353.2 440 50.9
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 4.1e-95 352.4 440 51.1
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 7.0e-95 351.7 440 50.9
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 1.6e-94 350.5 499 44.3
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 2.7e-94 349.7 501 43.7
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 1.0e-93 347.8 438 49.5
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 8.6e-93 344.7 463 46.2
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 4.3e-92 342.4 470 46.0
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 5.6e-92 342.0 470 46.8
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 7.3e-92 341.7 468 45.5
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 7.3e-92 341.7 438 50.2
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 2.1e-91 340.1 465 46.2
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 2.1e-91 340.1 446 49.1
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 6.2e-91 338.6 468 45.3
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 1.4e-90 337.4 442 48.9
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 2.3e-90 336.7 448 48.0
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 3.1e-90 336.3 494 43.5
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 6.8e-90 335.1 499 45.3
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 1.5e-89 334.0 469 45.8
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 2.6e-89 333.2 450 46.2
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 1.3e-88 330.9 431 46.9
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 1.3e-88 330.9 473 46.3
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 2.2e-88 330.1 482 42.9
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 2.2e-88 330.1 484 44.2
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 9.2e-87 324.7 383 49.1
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 9.2e-87 324.7 482 43.2
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 1.6e-86 323.9 512 41.6
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 6.0e-86 322.0 421 47.7
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 1.0e-85 321.2 478 43.3
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.3e-85 320.9 477 44.2
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 2.3e-85 320.1 481 43.5
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 3.9e-85 319.3 483 42.0
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 5.0e-85 318.9 481 43.7
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 1.5e-84 317.4 487 42.9
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.9e-84 317.0 470 43.8
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 4.3e-84 315.8 468 42.9
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 4.3e-84 315.8 471 43.1
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 9.5e-84 314.7 410 45.1
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 1.2e-83 314.3 477 43.0
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 6.2e-83 312.0 458 41.3
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 3.1e-82 309.7 469 42.0
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 3.1e-82 309.7 505 40.8
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 4.0e-82 309.3 525 40.6
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 4.0e-82 309.3 477 41.9
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 2.0e-81 307.0 462 44.2
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 4.9e-80 302.4 461 42.1
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 8.3e-80 301.6 531 39.4
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.1e-79 301.2 407 44.7
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 1.1e-79 301.2 504 41.1
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.9e-79 300.4 471 41.6
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 2.4e-79 300.1 471 41.8
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 1.2e-78 297.7 476 40.3
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 1.2e-78 297.7 486 41.8
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 1.6e-78 297.4 473 41.9
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 2.7e-78 296.6 486 41.2
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 3.5e-78 296.2 470 42.6
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 4.6e-78 295.8 471 41.8
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 7.8e-78 295.0 444 42.6
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 1.0e-77 294.7 460 42.6
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 1.0e-77 294.7 470 40.4
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 1.3e-77 294.3 468 41.9
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 2.3e-77 293.5 469 39.7
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 2.3e-77 293.5 491 39.9
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 6.6e-77 292.0 470 39.6
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 8.6e-77 291.6 460 40.9
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 8.6e-77 291.6 460 40.9
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 1.5e-76 290.8 519 39.5
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 3.3e-76 289.7 473 42.1
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 9.5e-76 288.1 480 40.2
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 1.6e-75 287.3 493 40.6
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 2.1e-75 287.0 463 41.7
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 2.1e-75 287.0 415 43.9
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 2.8e-75 286.6 476 39.1
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 3.6e-75 286.2 457 40.7
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 6.2e-75 285.4 467 40.9
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.4e-74 284.3 518 38.4
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 1.4e-74 284.3 518 38.4
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 3.1e-74 283.1 398 44.2
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 6.8e-74 282.0 388 44.3
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 6.8e-74 282.0 492 39.2
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.5e-73 280.8 484 38.8
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 2.6e-73 280.0 445 41.8
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 4.4e-73 279.3 390 42.8
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 4.4e-73 279.3 390 42.8
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 4.4e-73 279.3 466 40.1
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 9.9e-73 278.1 471 38.4
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 2.2e-72 276.9 483 39.3
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 3.8e-72 276.2 433 40.0
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 4.9e-72 275.8 411 43.6
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 1.1e-71 274.6 466 39.9
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 1.1e-71 274.6 396 42.7
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 1.2e-70 271.2 471 41.4
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 4.6e-70 269.2 511 35.2
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 3.0e-69 266.5 424 41.5
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 3.0e-69 266.5 511 35.0
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 1.9e-68 263.8 450 40.7
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 2.5e-68 263.5 390 41.5
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 2.8e-67 260.0 291 48.8
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 4.7e-67 259.2 358 44.1
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 3.1e-66 256.5 431 40.1
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 8.9e-66 255.0 334 45.5
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 5.8e-65 252.3 397 39.3
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 5.8e-65 252.3 456 37.5
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 1.3e-64 251.1 343 43.7
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 2.9e-64 250.0 429 38.5
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 4.2e-63 246.1 395 41.0
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 1.2e-62 244.6 463 37.8
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 4.3e-60 236.1 436 38.5
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 1.4e-58 231.1 429 39.9
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 2.6e-57 226.9 293 43.3
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 4.2e-55 219.5 556 30.8
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 4.0e-50 203.0 377 39.8
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 8.7e-45 185.3 393 37.7
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 8.7e-45 185.3 304 41.8
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 7.4e-44 182.2 175 57.1
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 6.2e-43 179.1 446 32.3
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 2.5e-39 167.2 219 48.4
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 3.2e-39 166.8 210 48.1
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 5.5e-39 166.0 210 47.6
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 1.0e-37 161.8 386 33.2
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 1.8e-34 151.0 216 44.9
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 4.5e-33 146.4 158 48.1
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 1.1e-28 131.7 216 41.7
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 6.3e-27 125.9 175 37.7
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 1.3e-24 118.2 226 37.6
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 6.5e-24 115.9 117 52.1
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 3.6e-22 110.2 204 36.8
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 1.4e-21 108.2 135 42.2
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 1.8e-21 107.8 176 41.5
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 5.7e-20 102.8 202 37.1
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 2.8e-19 100.5 347 26.8
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 1.8e-18 97.8 120 43.3
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 1.2e-17 95.1 252 31.3
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 2.0e-17 94.4 213 32.9
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 3.4e-17 93.6 74 56.8
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 4.5e-17 93.2 79 57.0
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 2.2e-16 90.9 119 42.0
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 1.1e-15 88.6 143 39.9
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 2.5e-15 87.4 201 31.3
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 1.2e-14 85.1 138 35.5
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 2.1e-14 84.3 204 30.4
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 3.0e-13 80.5 117 36.8
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 4.8e-11 73.2 156 36.5
FAN11G0972 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.4e-10 71.6 182 32.4
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 1.8e-10 71.2 156 33.3
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 1.2e-09 68.6 102 41.2
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 1.0e-08 65.5 115 40.9
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 5.0e-08 63.2 146 32.9
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 8.5e-08 62.4 115 40.0
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 1.1e-07 62.0 137 29.2
Sabra05G0101700 Salix brachista HOM05D004572 ORTHO05D005425 7.2e-07 59.3 37 70.3
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 9.4e-07 58.9 64 40.6
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 9.4e-07 58.9 133 31.6
Cre16.g654350 Chlamydomonas reinhardtii HOM05D003624 ORTHO05D004188 1.2e-06 58.5 110 35.5
Os03g0570300 Oryza sativa ssp. japonica HOM05D003624 ORTHO05D004188 1.6e-06 58.2 149 32.9
AT1G55460 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 4.7e-06 56.6 147 34.0
Atru.chr11.11 Acer truncatum HOM05D003624 ORTHO05D004188 6.1e-06 56.2 133 30.8
ECA232G3640 Erigeron canadensis HOM05D003624 ORTHO05D004188 8.0e-06 55.8 227 26.0


User provided reference genes

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