Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012902 Carpinus fangiana HOM05D004572 ORTHO05D005425 5.6e-198 694.1 361 100.0
Haze_21257 Corylus avellana HOM05D004572 ORTHO05D005425 6.5e-170 600.9 351 90.9
Cfa012912 Carpinus fangiana HOM05D004572 ORTHO05D005425 3.2e-169 598.6 342 89.8
CiPaw.11G104400 Carya illinoinensis HOM05D004572 ORTHO05D005425 4.5e-123 445.3 368 69.3
Cfa021184 Carpinus fangiana HOM05D004572 ORTHO05D005425 4.4e-110 402.1 208 96.6
RcHm_v2.0_Chr5g0038051 Rosa chinensis HOM05D004572 ORTHO05D005425 1.2e-86 324.3 409 49.4
QL93p0146_0040 Quercus lobata HOM05D004572 ORTHO05D005425 1.5e-86 323.9 410 51.0
FAN21G2024 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.3e-85 320.9 402 50.0
FvH4_3g22160 Fragaria vesca HOM05D004572 ORTHO05D005425 1.7e-85 320.5 402 49.8
FAN11G3304 Fragaria x ananassa HOM05D004572 ORTHO05D005425 1.7e-85 320.5 402 49.8
CANSAT56G0747 Cannabis sativa HOM05D004572 ORTHO05D005425 2.9e-85 319.7 470 43.2
CANSAT56G1258 Cannabis sativa HOM05D004572 ORTHO05D005425 3.8e-85 319.3 472 42.8
FAN16G2201 Fragaria x ananassa HOM05D004572 ORTHO05D005425 3.2e-84 316.2 402 48.8
QL06p018920 Quercus lobata HOM05D004572 ORTHO05D005425 3.2e-84 316.2 414 49.3
MD11G1222200 Malus domestica HOM05D004572 ORTHO05D005425 2.1e-83 313.5 441 43.8
MD03G1208000 Malus domestica HOM05D004572 ORTHO05D005425 2.7e-83 313.2 420 45.2
Gohir.A05G253900 Gossypium hirsutum HOM05D004572 ORTHO05D005425 4.6e-83 312.4 439 45.8
Prupe.4G208800 Prunus persica HOM05D004572 ORTHO05D005425 6.0e-83 312.0 419 46.8
Dinv09440 Davidia involucrata HOM05D004572 ORTHO05D005425 1.0e-82 311.2 465 43.7
Duzib268G1853 Durio zibethinus HOM05D004572 ORTHO05D005425 3.9e-82 309.3 423 45.4
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla HOM05D004572 ORTHO05D005425 3.9e-82 309.3 470 46.2
Thecc.04G269400 Theobroma cacao HOM05D004572 ORTHO05D005425 3.9e-82 309.3 441 44.0
Gorai.009G267300 Gossypium raimondii HOM05D004572 ORTHO05D005425 2.5e-81 306.6 439 45.1
Hund14323 Selenicereus undatus HOM05D004572 ORTHO05D005425 3.3e-81 306.2 453 42.2
Lalb_Chr20g0109201 Lupinus albus HOM05D004572 ORTHO05D005425 4.3e-81 305.8 417 47.5
Gohir.D05G255680 Gossypium hirsutum HOM05D004572 ORTHO05D005425 5.6e-81 305.4 439 44.9
Duzib177G0040 Durio zibethinus HOM05D004572 ORTHO05D005425 1.3e-80 304.3 436 43.8
QL12p001966 Quercus lobata HOM05D004572 ORTHO05D005425 4.8e-80 302.4 426 47.9
Manes.03G127100 Manihot esculenta HOM05D004572 ORTHO05D005425 8.1e-80 301.6 444 44.8
ClCG07G002440 Citrullus lanatus HOM05D004572 ORTHO05D005425 2.4e-79 300.1 453 41.7
Manes.03G127200 Manihot esculenta HOM05D004572 ORTHO05D005425 2.4e-79 300.1 440 44.3
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea HOM05D004572 ORTHO05D005425 4.0e-79 299.3 442 42.3
CsaV3_3G030260 Cucumis sativus L. HOM05D004572 ORTHO05D005425 4.0e-79 299.3 455 42.4
Rhsim01G0089200 Rhododendron simsii HOM05D004572 ORTHO05D005425 4.5e-78 295.8 452 44.9
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea HOM05D004572 ORTHO05D005425 1.3e-77 294.3 452 41.4
Phvul.003G026500 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 2.2e-77 293.5 446 42.8
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea HOM05D004572 ORTHO05D005425 2.9e-77 293.1 460 41.1
Phvul.003G004000 Phaseolus vulgaris HOM05D004572 ORTHO05D005425 1.1e-76 291.2 452 44.2
vmacro05137 Vaccinium macrocarpon HOM05D004572 ORTHO05D005425 1.1e-76 291.2 477 40.3
MELO3C022741.2 Cucumis melo HOM05D004572 ORTHO05D005425 1.9e-76 290.4 454 40.3
VMungo0720G3103 Vigna mungo HOM05D004572 ORTHO05D005425 3.2e-76 289.7 446 41.9
Atru.chr6.2109 Acer truncatum HOM05D004572 ORTHO05D005425 4.2e-76 289.3 364 45.9
TWI32G1304 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 3.5e-75 286.2 443 42.4
Sed0022149 Sechium edule HOM05D004572 ORTHO05D005425 6.0e-75 285.4 474 39.7
THA.LOC104815806 Tarenaya hassleriana HOM05D004572 ORTHO05D005425 1.0e-74 284.6 447 40.5
Psat6g099680 Pisum sativum HOM05D004572 ORTHO05D005425 1.3e-74 284.3 429 40.8
HanXRQChr04g0098951 Helianthus annuus HOM05D004572 ORTHO05D005425 2.3e-74 283.5 381 44.1
Thhalv10007601m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 3.0e-74 283.1 433 42.3
Nn5g27612 Nelumbo nucifera HOM05D004572 ORTHO05D005425 3.9e-74 282.7 495 39.2
Glyma.07G197900 Glycine max HOM05D004572 ORTHO05D005425 1.5e-73 280.8 440 40.7
BcaB03g13695 Brassica carinata HOM05D004572 ORTHO05D005425 3.3e-73 279.6 429 40.1
BcaC05g27801 Brassica carinata HOM05D004572 ORTHO05D005425 4.3e-73 279.3 429 40.6
C05p37990 Brassica napus HOM05D004572 ORTHO05D005425 4.3e-73 279.3 429 40.6
CARHR032960 Cardamine hirsuta HOM05D004572 ORTHO05D005425 5.6e-73 278.9 437 41.9
AL1G47900 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 1.3e-72 277.7 444 41.4
Carub.0001s3171 Capsella rubella HOM05D004572 ORTHO05D005425 1.3e-72 277.7 441 40.1
Ah.08g210120 Amaranthus hybridus HOM05D004572 ORTHO05D005425 2.1e-72 276.9 444 40.3
BraA05t21310Z Brassica rapa HOM05D004572 ORTHO05D005425 3.6e-72 276.2 425 41.4
COL.COLO4_28616 Corchorus olitorius HOM05D004572 ORTHO05D005425 6.2e-72 275.4 439 39.2
Lj2g0021533 Lotus japonicus HOM05D004572 ORTHO05D005425 8.1e-72 275.0 432 41.9
Sp1g28990 Schrenkiella parvula HOM05D004572 ORTHO05D005425 1.1e-71 274.6 440 40.5
Sc07g0008270 Simmondsia chinensis HOM05D004572 ORTHO05D005425 1.8e-71 273.9 501 38.5
AT1G33520 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.2e-70 271.2 442 40.5
BolC5t32530H Brassica oleracea HOM05D004572 ORTHO05D005425 1.5e-70 270.8 430 40.2
ECA248G3611 Erigeron canadensis HOM05D004572 ORTHO05D005425 1.5e-70 270.8 379 43.8
TAR629G0838 Trochodendron aralioides HOM05D004572 ORTHO05D005425 2.6e-70 270.0 471 38.9
Potri.003G104200 Populus trichocarpa HOM05D004572 ORTHO05D005425 4.5e-70 269.2 444 40.1
Peaxi162Scf00445g00102 Petunia axillaris HOM05D004572 ORTHO05D005425 4.9e-69 265.8 446 39.7
PGSC0003DMG400029573 Solanum tuberosum HOM05D004572 ORTHO05D005425 4.9e-69 265.8 463 39.1
Cc04_g13510 Coffea canephora HOM05D004572 ORTHO05D005425 1.1e-68 264.6 457 39.4
DCAR_023418 Daucus carota HOM05D004572 ORTHO05D005425 1.9e-68 263.8 443 40.9
CSS0029181 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.4e-68 263.5 492 36.0
CSS0036523 Camellia sinensis var. sinensis HOM05D004572 ORTHO05D005425 2.4e-68 263.5 492 36.0
DCAR_017646 Daucus carota HOM05D004572 ORTHO05D005425 2.4e-68 263.5 442 39.8
MBI12_g26901_MAGBIO Magnolia biondii HOM05D004572 ORTHO05D005425 2.4e-68 263.5 447 38.5
Cc04_g13460 Coffea canephora HOM05D004572 ORTHO05D005425 4.2e-68 262.7 461 39.0
Potri.001G129700 Populus trichocarpa HOM05D004572 ORTHO05D005425 7.1e-68 261.9 442 39.1
AT4G25020 Arabidopsis thaliana HOM05D004572 ORTHO05D005425 1.6e-67 260.8 360 44.2
Aa31LG6G7980 Aethionema arabicum HOM05D004572 ORTHO05D005425 2.1e-67 260.4 436 40.8
Oeu028098.1 Olea europaea HOM05D004572 ORTHO05D005425 2.7e-67 260.0 441 38.8
AUR62019030 Chenopodium quinoa HOM05D004572 ORTHO05D005425 4.6e-67 259.2 445 37.3
Sabra03G0071200 Salix brachista HOM05D004572 ORTHO05D005425 4.6e-67 259.2 416 39.9
Sopen08g023180 Solanum pennellii HOM05D004572 ORTHO05D005425 7.9e-67 258.5 464 39.0
Nitab4.5_0001131g0030 Nicotiana tabacum HOM05D004572 ORTHO05D005425 1.0e-66 258.1 452 38.5
ECA233G3653 Erigeron canadensis HOM05D004572 ORTHO05D005425 2.3e-66 256.9 386 43.3
Nitab4.5_0000907g0020 Nicotiana tabacum HOM05D004572 ORTHO05D005425 2.3e-66 256.9 451 37.9
Solyc08g074570.1 Solanum lycopersicum HOM05D004572 ORTHO05D005425 3.0e-66 256.5 464 39.0
Thhalv10027298m.g Eutrema salsugineum HOM05D004572 ORTHO05D005425 6.7e-66 255.4 343 43.7
Aqoxy5G04375 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 9.6e-65 251.5 490 35.7
AL7G28150 Arabidopsis lyrata HOM05D004572 ORTHO05D005425 1.6e-64 250.8 382 42.7
Ca_12422_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.6e-64 250.8 365 42.5
Ca_12425_v3 Cicer arietinum L. HOM05D004572 ORTHO05D005425 1.6e-64 250.8 365 42.5
Glyma.20G002200 Glycine max HOM05D004572 ORTHO05D005425 6.2e-64 248.8 369 43.4
TPR.G29795 Trifolium pratense HOM05D004572 ORTHO05D005425 6.2e-64 248.8 438 40.9
Ciclev10001464m.g Citrus clementina HOM05D004572 ORTHO05D005425 1.1e-63 248.1 367 43.6
AUR62008525 Chenopodium quinoa HOM05D004572 ORTHO05D005425 1.8e-63 247.3 440 35.9
MSTRG.11833 Avicennia marina HOM05D004572 ORTHO05D005425 1.5e-62 244.2 437 38.0
Carub.0007s1601 Capsella rubella HOM05D004572 ORTHO05D005425 4.5e-62 242.7 361 41.6
SalBow4G0115 Salvia bowleyana HOM05D004572 ORTHO05D005425 7.6e-62 241.9 439 37.4
Medtr1g038340 Medicago truncatula HOM05D004572 ORTHO05D005425 2.9e-61 240.0 360 42.2
PGR042G2393 Punica granatum HOM05D004572 ORTHO05D005425 1.8e-58 230.7 403 37.5
Migut.A00508 Erythranthe guttata HOM05D004572 ORTHO05D005425 2.3e-58 230.3 439 37.6
SGA_v2.0_scaffold27G11714 Striga asiatica HOM05D004572 ORTHO05D005425 3.0e-58 229.9 380 39.7
VMungo0251G2350 Vigna mungo HOM05D004572 ORTHO05D005425 5.1e-58 229.2 276 47.1
Manes.15G074001 Manihot esculenta HOM05D004572 ORTHO05D005425 4.3e-57 226.1 418 39.7
PSO541G6108 Papaver somniferum HOM05D004572 ORTHO05D005425 2.1e-56 223.8 482 31.5
Zm00001eb398470 Zea mays HOM05D004572 ORTHO05D005425 3.7e-56 223.0 366 40.4
unitig_748.g8160 Utricularia gibba HOM05D004572 ORTHO05D005425 6.3e-56 222.2 432 36.1
PSO675G6986 Papaver somniferum HOM05D004572 ORTHO05D005425 1.1e-55 221.5 484 31.0
CAN.G195.29 Capsicum annuum HOM05D004572 ORTHO05D005425 4.1e-55 219.5 368 38.0
Os03g0253500 Oryza sativa ssp. japonica HOM05D004572 ORTHO05D005425 1.2e-54 218.0 400 36.8
Sabra01G0100000 Salix brachista HOM05D004572 ORTHO05D005425 1.5e-54 217.6 329 41.0
Eucgr.E01208 Eucalyptus grandis HOM05D004572 ORTHO05D005425 1.7e-53 214.2 446 35.7
Lj8P410T5 Lonicera japonica HOM05D004572 ORTHO05D005425 1.7e-53 214.2 305 42.0
HPP92_014435 Vanilla planifolia HOM05D004572 ORTHO05D005425 1.4e-52 211.1 401 36.7
CARHR232410 Cardamine hirsuta HOM05D004572 ORTHO05D005425 1.9e-52 210.7 262 45.0
Cpa.g.sc21.98 Carica papaya HOM05D004572 ORTHO05D005425 4.8e-48 196.1 393 37.9
ATR0579G060 Amborella trichopoda HOM05D004572 ORTHO05D005425 1.4e-47 194.5 527 30.6
Oeu048006.1 Olea europaea HOM05D004572 ORTHO05D005425 4.4e-41 172.9 351 39.3
SHI08932 Sapria himalayana HOM05D004572 ORTHO05D005425 4.4e-41 172.9 426 31.5
PSO017G4650 Papaver somniferum HOM05D004572 ORTHO05D005425 3.7e-40 169.9 270 41.5
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 6.3e-40 169.1 208 49.5
Lsat_1_v5_gn_6_80001 Lactuca sativa HOM05D004572 ORTHO05D005425 1.4e-39 167.9 209 46.9
TWI34G1093 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 6.9e-39 165.6 215 48.8
Prupe.4G208700 Prunus persica HOM05D004572 ORTHO05D005425 7.9e-35 152.1 216 44.9
SMO347G0031 Selaginella moellendorffii HOM05D004572 ORTHO05D005425 6.7e-34 149.1 361 32.4
CDE02G0510 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 2.6e-33 147.1 134 57.5
RcHm_v2.0_Chr5g0037991 Rosa chinensis HOM05D004572 ORTHO05D005425 1.1e-28 131.7 214 42.5
SEGI_34794 Sequoiadendron giganteum HOM05D004572 ORTHO05D005425 6.1e-27 125.9 140 45.0
Aqoxy7G00153 Aquilegia oxysepala HOM05D004572 ORTHO05D005425 8.8e-26 122.1 221 33.9
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 3.1e-23 113.6 226 37.2
FAN16G0157 Fragaria x ananassa HOM05D004572 ORTHO05D005425 2.0e-22 110.9 204 37.3
FvH4_3g22140 Fragaria vesca HOM05D004572 ORTHO05D005425 7.7e-22 109.0 176 41.5
PSO170G2332 Papaver somniferum HOM05D004572 ORTHO05D005425 3.8e-21 106.7 135 42.2
Glyma.09G283500 Glycine max HOM05D004572 ORTHO05D005425 1.6e-19 101.3 202 36.6
Mapoly0027s0115 Marchantia polymorpha HOM05D004572 ORTHO05D005425 1.6e-19 101.3 88 55.7
Pp3c1_630 Physcomitrium patens HOM05D004572 ORTHO05D005425 1.8e-18 97.8 235 31.1
HanXRQChr03g0083281 Helianthus annuus HOM05D004572 ORTHO05D005425 4.0e-18 96.7 179 35.8
CBR_g50444 Chara braunii HOM05D004572 ORTHO05D005425 5.2e-18 96.3 108 45.4
CBR_g54973 Chara braunii HOM05D004572 ORTHO05D005425 8.8e-18 95.5 108 45.4
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis HOM05D004572 ORTHO05D005425 2.0e-17 94.4 201 33.3
Sed0007980 Sechium edule HOM05D004572 ORTHO05D005425 1.3e-16 91.7 79 57.0
MCO10G255 Micromonas commoda HOM05D004572 ORTHO05D005425 1.4e-15 88.2 466 25.5
SalBow7G4536 Salvia bowleyana HOM05D000482 ORTHO05D000349 1.8e-15 87.8 117 41.0
CDE11G0183 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 7.7e-14 82.4 93 37.6
Nn3g17595 Nelumbo nucifera HOM05D004572 ORTHO05D005425 1.3e-13 81.6 156 38.5
Cre06.g303500 Chlamydomonas reinhardtii HOM05D004572 ORTHO05D005425 1.1e-12 78.6 83 44.6
PRCOL_00000575 Prasinoderma coloniale HOM05D004572 ORTHO05D005425 9.5e-12 75.5 86 44.2
TWI74G0109 Tripterygium wilfordii HOM05D004572 ORTHO05D005425 2.8e-11 73.9 145 35.9
FAN11G0972 Fragaria x ananassa HOM05D004572 ORTHO05D005425 4.7e-11 73.2 182 32.4
COL.COLO4_35853 Corchorus olitorius HOM05D004572 ORTHO05D005425 6.8e-10 69.3 102 40.2
Cc11_g00690 Coffea canephora HOM05D004572 ORTHO05D005425 2.0e-09 67.8 115 40.9
CDE04G1584 Ceratophyllum demersum HOM05D004572 ORTHO05D005425 1.3e-08 65.1 146 30.1
Cc02_g26180 Coffea canephora HOM05D004572 ORTHO05D005425 6.3e-08 62.8 115 40.0
CBR_g2939 Chara braunii HOM05D007240 ORTHO05D003552 2.4e-07 60.8 129 30.2
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 2.4e-07 60.8 128 30.5
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis HOM05D004572 ORTHO05D005425 7.0e-07 59.3 71 42.3
Sabra05G0101600 Salix brachista HOM05D004572 ORTHO05D005425 7.8e-06 55.8 47 46.8


User provided reference genes

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