Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012861 Carpinus fangiana HOM05D006934 ORTHO05D008743 1.2e-51 206.1 93 100.0
Cfa013059 Carpinus fangiana HOM05D006934 ORTHO05D008743 3.1e-23 111.7 52 96.2
Haze_21418 Corylus avellana HOM05D006934 ORTHO05D008743 3.1e-23 111.7 52 96.2
CiPaw.07G230200 Carya illinoinensis HOM05D006934 ORTHO05D008743 1.2e-19 99.8 52 84.6
Lalb_Chr23g0268221 Lupinus albus HOM05D006934 ORTHO05D008743 2.1e-19 99.0 53 81.1
Hma1.2p1_0706F.1_g207020 Hydrangea macrophylla HOM05D006934 ORTHO05D008743 1.7e-18 95.9 52 80.8
Psat5g033000 Pisum sativum HOM05D006934 ORTHO05D008743 6.6e-18 94.0 51 80.4
RcHm_v2.0_Chr6g0299421 Rosa chinensis HOM05D006934 ORTHO05D008743 6.6e-18 94.0 53 75.5
Rhsim02G0213000 Rhododendron simsii HOM05D006934 ORTHO05D008743 8.6e-18 93.6 53 79.2
Prupe.1G393700 Prunus persica HOM05D006934 ORTHO05D008743 1.1e-17 93.2 53 75.5
FvH4_2g41120 Fragaria vesca HOM05D006934 ORTHO05D008743 1.5e-17 92.8 53 75.5
FAN27G3133 Fragaria x ananassa HOM05D006934 ORTHO05D008743 1.5e-17 92.8 53 75.5
QL02p018881 Quercus lobata HOM05D006934 ORTHO05D008743 1.5e-17 92.8 52 75.0
CSS0041678 Camellia sinensis var. sinensis HOM05D006934 ORTHO05D008743 1.9e-17 92.4 51 76.5
CSS0048576 Camellia sinensis var. sinensis HOM05D006934 ORTHO05D008743 1.9e-17 92.4 51 76.5
MSTRG.25834 Avicennia marina HOM05D006934 ORTHO05D008743 3.3e-17 91.7 52 71.2
Potri.018G018700 Populus trichocarpa HOM05D006934 ORTHO05D008743 3.3e-17 91.7 52 75.0
Solyc08g068580.4 Solanum lycopersicum HOM05D006934 ORTHO05D008743 3.3e-17 91.7 51 72.5
Actinidia10522 Actinidia chinensis HOM05D006934 ORTHO05D008743 4.3e-17 91.3 53 75.5
Sopen08g022340 Solanum pennellii HOM05D006934 ORTHO05D008743 5.6e-17 90.9 53 69.8
Phvul.009G087000 Phaseolus vulgaris HOM05D006934 ORTHO05D008743 7.3e-17 90.5 53 71.7
TAR626G1595 Trochodendron aralioides HOM05D006934 ORTHO05D008743 7.3e-17 90.5 52 75.0
CAN.G21.49 Capsicum annuum HOM05D006934 ORTHO05D008743 9.6e-17 90.1 53 66.0
Ca_15778_v3 Cicer arietinum L. HOM05D006934 ORTHO05D008743 9.6e-17 90.1 52 73.1
Peaxi162Scf00822g00212 Petunia axillaris HOM05D006934 ORTHO05D008743 9.6e-17 90.1 52 71.2
VMungo1309G2247 Vigna mungo HOM05D006934 ORTHO05D008743 9.6e-17 90.1 51 74.5
Eucgr.C02526 Eucalyptus grandis HOM05D006934 ORTHO05D008743 1.2e-16 89.7 52 75.0
Glyma.06G061500 Glycine max HOM05D006934 ORTHO05D008743 1.2e-16 89.7 51 74.5
Medtr3g105980 Medicago truncatula HOM05D006934 ORTHO05D008743 1.2e-16 89.7 51 76.5
PGSC0003DMG400029048 Solanum tuberosum HOM05D006934 ORTHO05D008743 1.2e-16 89.7 53 67.9
TPR.G1832 Trifolium pratense HOM05D006934 ORTHO05D008743 1.2e-16 89.7 51 74.5
arahy.Tifrunner.gnm1.ann1.XZ9AUI Arachis hypogaea HOM05D006934 ORTHO05D008743 1.6e-16 89.4 52 73.1
Glyma.04G060900 Glycine max HOM05D006934 ORTHO05D008743 1.6e-16 89.4 51 76.5
Sabra18G0021400 Salix brachista HOM05D006934 ORTHO05D008743 1.6e-16 89.4 51 74.5
Lj1g0027414 Lotus japonicus HOM05D006934 ORTHO05D008743 2.1e-16 89.0 51 72.5
Nitab4.5_0006202g0030 Nicotiana tabacum HOM05D006934 ORTHO05D008743 2.1e-16 89.0 51 70.6
Atru.chr7.2565 Acer truncatum HOM05D006934 ORTHO05D008743 3.6e-16 88.2 52 71.2
Dinv11656 Davidia involucrata HOM05D006934 ORTHO05D008743 3.6e-16 88.2 52 75.0
Manes.03G008700 Manihot esculenta HOM05D006934 ORTHO05D008743 3.6e-16 88.2 52 69.2
Thecc.09G015800 Theobroma cacao HOM05D006934 ORTHO05D008743 3.6e-16 88.2 53 67.9
TWI34G0497 Tripterygium wilfordii HOM05D006934 ORTHO05D008743 3.6e-16 88.2 53 67.9
MBI15_g19327_MAGBIO Magnolia biondii HOM05D006934 ORTHO05D008743 4.7e-16 87.8 51 76.5
Migut.A00351 Erythranthe guttata HOM05D006934 ORTHO05D008743 8.1e-16 87.0 52 71.2
Lj7C734G21 Lonicera japonica HOM05D006934 ORTHO05D008743 8.1e-16 87.0 51 74.5
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 8.1e-16 87.0 51 68.6
Cpa.g.sc127.37 Carica papaya HOM05D006934 ORTHO05D008743 1.1e-15 86.7 52 69.2
Ciclev10008002m.g Citrus clementina HOM05D006934 ORTHO05D008743 1.1e-15 86.7 51 72.5
Aqoxy2G03820 Aquilegia oxysepala HOM05D006934 ORTHO05D008743 1.8e-15 85.9 52 73.1
CANSAT25G0127 Cannabis sativa HOM05D006934 ORTHO05D008743 1.8e-15 85.9 53 66.0
Duzib168G1051 Durio zibethinus HOM05D006934 ORTHO05D008743 1.8e-15 85.9 53 64.2
Eucgr.C02612 Eucalyptus grandis HOM05D006934 ORTHO05D008743 1.8e-15 85.9 52 71.2
Gohir.D07G036200 Gossypium hirsutum HOM05D006934 ORTHO05D008743 4.0e-15 84.7 53 64.2
Gorai.001G038100 Gossypium raimondii HOM05D006934 ORTHO05D008743 4.0e-15 84.7 53 64.2
Gohir.A07G032950 Gossypium hirsutum HOM05D006934 ORTHO05D008743 5.2e-15 84.3 53 64.2
Eucgr.C02525 Eucalyptus grandis HOM05D006934 ORTHO05D008743 8.9e-15 83.6 52 71.2
Aqoxy5G03587 Aquilegia oxysepala HOM05D006934 ORTHO05D008743 1.5e-14 82.8 61 63.9
MD15G1040400 Malus domestica HOM05D006934 ORTHO05D008743 1.5e-14 82.8 53 64.2
GSVIVG01035967001 Vitis vinifera HOM05D006934 ORTHO05D008743 1.5e-14 82.8 51 66.7
Ah.12g060980 Amaranthus hybridus HOM05D006934 ORTHO05D008743 2.0e-14 82.4 52 69.2
PGR044G1250 Punica granatum HOM05D006934 ORTHO05D008743 2.0e-14 82.4 53 66.0
COL.COLO4_18949 Corchorus olitorius HOM05D006934 ORTHO05D008743 2.6e-14 82.0 53 62.3
vmacro11241 Vaccinium macrocarpon HOM05D006934 ORTHO05D008743 2.6e-14 82.0 49 71.4
Eucgr.C02611 Eucalyptus grandis HOM05D006934 ORTHO05D008743 3.4e-14 81.6 52 69.2
Sc09g0010640 Simmondsia chinensis HOM05D006934 ORTHO05D008743 3.4e-14 81.6 52 65.4
ECA236G4849 Erigeron canadensis HOM05D006934 ORTHO05D008743 4.4e-14 81.3 51 64.7
Gohir.D06G103800 Gossypium hirsutum HOM05D006934 ORTHO05D008743 4.4e-14 81.3 53 60.4
Gorai.010G118800 Gossypium raimondii HOM05D006934 ORTHO05D008743 4.4e-14 81.3 53 60.4
Nn2g12390 Nelumbo nucifera HOM05D006934 ORTHO05D008743 4.4e-14 81.3 52 69.2
Thhalv10004366m.g Eutrema salsugineum HOM05D006934 ORTHO05D008743 5.8e-14 80.9 53 62.3
Gohir.A06G101800 Gossypium hirsutum HOM05D006934 ORTHO05D008743 9.9e-14 80.1 53 58.5
Lsat_1_v5_gn_8_82201 Lactuca sativa HOM05D006934 ORTHO05D008743 1.3e-13 79.7 51 62.7
ClCG05G016280 Citrullus lanatus HOM05D006934 ORTHO05D008743 1.7e-13 79.3 56 60.7
EL10Ac2g02505 Beta vulgaris HOM05D006934 ORTHO05D008743 2.9e-13 78.6 51 68.6
CDE02G1998 Ceratophyllum demersum HOM05D006934 ORTHO05D008743 2.9e-13 78.6 51 64.7
Os06g0649900 Oryza sativa ssp. japonica HOM05D006934 ORTHO05D008743 2.9e-13 78.6 52 63.5
QL02p018870 Quercus lobata HOM05D006934 ORTHO05D008743 2.9e-13 78.6 51 68.6
Sp2g22420 Schrenkiella parvula HOM05D006934 ORTHO05D008743 2.9e-13 78.6 53 58.5
HPP92_004696 Vanilla planifolia HOM05D006934 ORTHO05D008743 2.9e-13 78.6 51 64.7
Aa31LG11G4330 Aethionema arabicum HOM05D006934 ORTHO05D008743 3.8e-13 78.2 53 64.2
AL6G36750 Arabidopsis lyrata HOM05D006934 ORTHO05D008743 3.8e-13 78.2 53 58.5
Cc08_g06990 Coffea canephora HOM05D006934 ORTHO05D008743 3.8e-13 78.2 51 64.7
CARHR188390 Cardamine hirsuta HOM05D006934 ORTHO05D008743 4.9e-13 77.8 53 60.4
AUR62024810 Chenopodium quinoa HOM05D006934 ORTHO05D008743 4.9e-13 77.8 52 63.5
AUR62032410 Chenopodium quinoa HOM05D006934 ORTHO05D008743 4.9e-13 77.8 52 63.5
Nn8g39897 Nelumbo nucifera HOM05D006934 ORTHO05D008743 4.9e-13 77.8 52 59.6
MELO3C016958.2 Cucumis melo HOM05D006934 ORTHO05D008743 6.4e-13 77.4 56 58.9
PSO017G3817 Papaver somniferum HOM05D006934 ORTHO05D008743 6.4e-13 77.4 61 60.7
PSO170G6733 Papaver somniferum HOM05D006934 ORTHO05D008743 6.4e-13 77.4 61 60.7
Zm00001eb275030 Zea mays HOM05D006934 ORTHO05D008743 6.4e-13 77.4 54 61.1
BcaNung03200 Brassica carinata HOM05D006934 ORTHO05D008743 1.1e-12 76.6 53 56.6
BcaNung06716 Brassica carinata HOM05D006934 ORTHO05D008743 1.1e-12 76.6 53 56.6
A06p35860 Brassica napus HOM05D006934 ORTHO05D008743 1.4e-12 76.3 53 56.6
BraA06t26511Z Brassica rapa HOM05D006934 ORTHO05D008743 1.4e-12 76.3 53 56.6
Hund02990 Selenicereus undatus HOM05D006934 ORTHO05D008743 1.9e-12 75.9 52 61.5
Zm00001eb334470 Zea mays HOM05D006934 ORTHO05D008743 1.9e-12 75.9 51 64.7
SEGI_09290 Sequoiadendron giganteum HOM05D006934 ORTHO05D008743 2.4e-12 75.5 51 60.8
THA.LOC104799020 Tarenaya hassleriana HOM05D006934 ORTHO05D008743 2.4e-12 75.5 51 62.7
Sed0006653 Sechium edule HOM05D006934 ORTHO05D008743 3.2e-12 75.1 51 64.7
HanXRQChr06g0176741 Helianthus annuus HOM05D006934 ORTHO05D008743 4.2e-12 74.7 52 59.6
CsaV3_4G036540 Cucumis sativus L. HOM05D006934 ORTHO05D008743 5.4e-12 74.3 52 59.6
BcaNung02296 Brassica carinata HOM05D006934 ORTHO05D008743 1.2e-11 73.2 53 52.8
C07p42720 Brassica napus HOM05D006934 ORTHO05D008743 1.2e-11 73.2 53 52.8
BolC7t44802H Brassica oleracea HOM05D006934 ORTHO05D008743 1.2e-11 73.2 53 52.8
ATR0739G024 Amborella trichopoda HOM05D006934 ORTHO05D008743 1.6e-11 72.8 51 62.7
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 3.5e-11 71.6 52 61.5
Pp3c3_35450 Physcomitrium patens HOM05D006934 ORTHO05D008743 3.3e-09 65.1 52 50.0
Eucgr.C02635 Eucalyptus grandis HOM05D006934 ORTHO05D008743 2.0e-06 55.8 51 49.0


User provided reference genes

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