Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012856 Carpinus fangiana HOM05D003571 ORTHO05D004193 9.2e-59 229.9 111 100.0
Cfa017571 Carpinus fangiana HOM05D003571 ORTHO05D004193 8.4e-36 153.7 79 93.7
Haze_20580 Corylus avellana HOM05D003571 ORTHO05D004193 8.4e-36 153.7 79 93.7
COL.COLO4_26995 Corchorus olitorius HOM05D003571 ORTHO05D004193 3.5e-34 148.3 79 89.9
CiPaw.09G174600 Carya illinoinensis HOM05D003571 ORTHO05D004193 3.9e-33 144.8 79 87.3
Atru.chr8.1854 Acer truncatum HOM05D003571 ORTHO05D004193 8.7e-33 143.7 79 87.3
QL07p044235 Quercus lobata HOM05D003571 ORTHO05D004193 1.9e-32 142.5 79 86.1
Cfa005484 Carpinus fangiana HOM05D003571 ORTHO05D004193 2.5e-32 142.1 79 87.3
Thecc.05G061900 Theobroma cacao HOM05D003571 ORTHO05D004193 7.4e-32 140.6 79 84.8
Duzib106G0011 Durio zibethinus HOM05D003571 ORTHO05D004193 2.1e-31 139.0 79 83.5
arahy.Tifrunner.gnm1.ann1.QCG7AI Arachis hypogaea HOM05D003571 ORTHO05D004193 6.2e-31 137.5 79 82.3
arahy.Tifrunner.gnm1.ann1.W3VJBC Arachis hypogaea HOM05D003571 ORTHO05D004193 6.2e-31 137.5 79 82.3
Cpa.g.sc390.5 Carica papaya HOM05D003571 ORTHO05D004193 6.2e-31 137.5 80 82.5
CiPaw.10G133100 Carya illinoinensis HOM05D003571 ORTHO05D004193 1.1e-30 136.7 79 81.0
FvH4_6g16040 Fragaria vesca HOM05D003571 ORTHO05D004193 1.1e-30 136.7 81 82.7
FAN09G2327 Fragaria x ananassa HOM05D003571 ORTHO05D004193 1.1e-30 136.7 81 82.7
ClCG04G009140 Citrullus lanatus HOM05D003571 ORTHO05D004193 1.8e-30 136.0 79 78.5
MELO3C014230.2 Cucumis melo HOM05D003571 ORTHO05D004193 1.8e-30 136.0 79 78.5
CsaV3_6G039650 Cucumis sativus L. HOM05D003571 ORTHO05D004193 1.8e-30 136.0 79 78.5
Prupe.6G235600 Prunus persica HOM05D003571 ORTHO05D004193 1.8e-30 136.0 78 82.1
TWI74G0293 Tripterygium wilfordii HOM05D003571 ORTHO05D004193 1.8e-30 136.0 79 79.7
FAN14G4150 Fragaria x ananassa HOM05D003571 ORTHO05D004193 2.4e-30 135.6 81 81.5
PGR142G1072 Punica granatum HOM05D003571 ORTHO05D004193 2.4e-30 135.6 78 80.8
arahy.Tifrunner.gnm1.ann1.4G0IWV Arachis hypogaea HOM05D003571 ORTHO05D004193 5.3e-30 134.4 79 81.0
arahy.Tifrunner.gnm1.ann1.SVA4CI Arachis hypogaea HOM05D003571 ORTHO05D004193 5.3e-30 134.4 79 81.0
Duzib093G0844 Durio zibethinus HOM05D003571 ORTHO05D004193 5.3e-30 134.4 79 82.3
FAN05G4723 Fragaria x ananassa HOM05D003571 ORTHO05D004193 5.3e-30 134.4 81 81.5
Sed0010243 Sechium edule HOM05D003571 ORTHO05D004193 6.9e-30 134.0 79 77.2
Gorai.006G166200 Gossypium raimondii HOM05D003571 ORTHO05D004193 2.0e-29 132.5 78 82.1
Sed0017601 Sechium edule HOM05D003571 ORTHO05D004193 2.0e-29 132.5 79 78.5
BcaNung06157 Brassica carinata HOM05D003571 ORTHO05D004193 3.4e-29 131.7 81 77.8
C09p73500 Brassica napus HOM05D003571 ORTHO05D004193 3.4e-29 131.7 81 77.8
BolC9t60082H Brassica oleracea HOM05D003571 ORTHO05D004193 3.4e-29 131.7 81 77.8
Phvul.001G177500 Phaseolus vulgaris HOM05D003571 ORTHO05D004193 3.4e-29 131.7 79 77.2
TWI53G0828 Tripterygium wilfordii HOM05D003571 ORTHO05D004193 3.4e-29 131.7 79 74.7
GSVIVG01025701001 Vitis vinifera HOM05D003571 ORTHO05D004193 4.5e-29 131.3 81 80.2
Aqoxy1G01208 Aquilegia oxysepala HOM05D003571 ORTHO05D004193 7.6e-29 130.6 73 82.2
AL6G12590 Arabidopsis lyrata HOM05D003571 ORTHO05D004193 7.6e-29 130.6 80 78.8
AT5G03280 Arabidopsis thaliana HOM05D003571 ORTHO05D004193 7.6e-29 130.6 80 78.8
Thhalv10012456m.g Eutrema salsugineum HOM05D003571 ORTHO05D004193 7.6e-29 130.6 80 78.8
MD04G1096400 Malus domestica HOM05D003571 ORTHO05D004193 9.9e-29 130.2 78 79.5
Phvul.007G150600 Phaseolus vulgaris HOM05D003571 ORTHO05D004193 9.9e-29 130.2 74 81.1
RcHm_v2.0_Chr3g0469791 Rosa chinensis HOM05D003571 ORTHO05D004193 9.9e-29 130.2 81 80.2
VMungo0720G3123 Vigna mungo HOM05D003571 ORTHO05D004193 9.9e-29 130.2 74 81.1
A10p32660 Brassica napus HOM05D003571 ORTHO05D004193 1.3e-28 129.8 80 77.5
BraA10t45303Z Brassica rapa HOM05D003571 ORTHO05D004193 1.3e-28 129.8 80 77.5
Lj5g0026041 Lotus japonicus HOM05D003571 ORTHO05D004193 1.3e-28 129.8 75 78.7
Potri.016G090800 Populus trichocarpa HOM05D003571 ORTHO05D004193 1.3e-28 129.8 71 87.3
BcaC06g32048 Brassica carinata HOM05D003571 ORTHO05D004193 1.7e-28 129.4 80 77.5
CARHR210060 Cardamine hirsuta HOM05D003571 ORTHO05D004193 1.7e-28 129.4 80 77.5
FAN02G1851 Fragaria x ananassa HOM05D003571 ORTHO05D004193 1.7e-28 129.4 81 79.0
Gohir.D09G144900 Gossypium hirsutum HOM05D003571 ORTHO05D004193 2.2e-28 129.0 78 80.8
Nitab4.5_0000101g0260 Nicotiana tabacum HOM05D003571 ORTHO05D004193 2.2e-28 129.0 83 77.1
Gohir.A09G149000 Gossypium hirsutum HOM05D003571 ORTHO05D004193 2.9e-28 128.6 78 79.5
Gohir.A11G324380 Gossypium hirsutum HOM05D003571 ORTHO05D004193 2.9e-28 128.6 79 79.7
THA.LOC104816665 Tarenaya hassleriana HOM05D003571 ORTHO05D004193 2.9e-28 128.6 80 76.2
Carub.0006s0208 Capsella rubella HOM05D003571 ORTHO05D004193 3.8e-28 128.3 80 77.5
Cc00_g20760 Coffea canephora HOM05D003571 ORTHO05D004193 3.8e-28 128.3 73 82.2
Sabra06G0100000 Salix brachista HOM05D003571 ORTHO05D004193 4.9e-28 127.9 67 91.0
Manes.09G063600 Manihot esculenta HOM05D003571 ORTHO05D004193 6.4e-28 127.5 70 85.7
THA.LOC104826906 Tarenaya hassleriana HOM05D003571 ORTHO05D004193 6.4e-28 127.5 80 78.8
TAR623G0708 Trochodendron aralioides HOM05D003571 ORTHO05D004193 6.4e-28 127.5 79 74.7
Sp6g39460 Schrenkiella parvula HOM05D003571 ORTHO05D004193 8.4e-28 127.1 80 77.5
VMungo1383G0779 Vigna mungo HOM05D003571 ORTHO05D004193 8.4e-28 127.1 79 75.9
CSS0031681 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 1.1e-27 126.7 72 81.9
CSS0040711 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 1.1e-27 126.7 72 81.9
Glyma.10G058300 Glycine max HOM05D003571 ORTHO05D004193 1.1e-27 126.7 70 84.3
Gohir.D11G343600 Gossypium hirsutum HOM05D003571 ORTHO05D004193 1.1e-27 126.7 79 78.5
Gorai.007G373800 Gossypium raimondii HOM05D003571 ORTHO05D004193 1.1e-27 126.7 79 78.5
Lsat_1_v5_gn_2_106480 Lactuca sativa HOM05D003571 ORTHO05D004193 1.1e-27 126.7 73 83.6
Nn2g13718 Nelumbo nucifera HOM05D003571 ORTHO05D004193 1.1e-27 126.7 77 79.2
Potri.006G127100 Populus trichocarpa HOM05D003571 ORTHO05D004193 1.1e-27 126.7 67 89.6
SalBow3G2504 Salvia bowleyana HOM05D003571 ORTHO05D004193 1.4e-27 126.3 80 80.0
SalBow3G3339 Salvia bowleyana HOM05D003571 ORTHO05D004193 1.4e-27 126.3 80 80.0
Dinv37294 Davidia involucrata HOM05D003571 ORTHO05D004193 1.9e-27 125.9 75 78.7
ECA238G4675 Erigeron canadensis HOM05D003571 ORTHO05D004193 1.9e-27 125.9 73 82.2
HanXRQChr07g0195371 Helianthus annuus HOM05D003571 ORTHO05D004193 1.9e-27 125.9 72 84.7
Lalb_Chr25g0289091 Lupinus albus HOM05D003571 ORTHO05D004193 1.9e-27 125.9 72 83.3
MD12G1117400 Malus domestica HOM05D003571 ORTHO05D004193 1.9e-27 125.9 73 80.8
Rhsim05G0180200 Rhododendron simsii HOM05D003571 ORTHO05D004193 1.9e-27 125.9 80 76.2
TAR636G0639 Trochodendron aralioides HOM05D003571 ORTHO05D004193 1.9e-27 125.9 76 77.6
TAR636G1534 Trochodendron aralioides HOM05D003571 ORTHO05D004193 1.9e-27 125.9 76 77.6
Lj3C982T5 Lonicera japonica HOM05D003571 ORTHO05D004193 3.2e-27 125.2 79 77.2
Peaxi162Scf00123g00089 Petunia axillaris HOM05D003571 ORTHO05D004193 3.2e-27 125.2 69 85.5
Hund17522 Selenicereus undatus HOM05D003571 ORTHO05D004193 3.2e-27 125.2 79 79.7
Aa31LG1G21830 Aethionema arabicum HOM05D003571 ORTHO05D004193 4.2e-27 124.8 68 85.3
Lj1g0021596 Lotus japonicus HOM05D003571 ORTHO05D004193 4.2e-27 124.8 80 78.8
Solyc09g007870.3 Solanum lycopersicum HOM05D003571 ORTHO05D004193 4.2e-27 124.8 69 85.5
PGSC0003DMG400021547 Solanum tuberosum HOM05D003571 ORTHO05D004193 4.2e-27 124.8 69 85.5
Sopen09g002710 Solanum pennellii HOM05D003571 ORTHO05D004193 5.5e-27 124.4 69 85.5
EL10Ac1g01686 Beta vulgaris HOM05D003571 ORTHO05D004193 9.3e-27 123.6 76 77.6
Migut.J00540 Erythranthe guttata HOM05D003571 ORTHO05D004193 9.3e-27 123.6 76 81.6
vmacro08767 Vaccinium macrocarpon HOM05D003571 ORTHO05D004193 9.3e-27 123.6 78 75.6
Manes.08G008200 Manihot esculenta HOM05D003571 ORTHO05D004193 1.2e-26 123.2 74 79.7
CSS0014133 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 1.6e-26 122.9 74 81.1
CSS0046537 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 1.6e-26 122.9 74 81.1
CANSAT80G1173 Cannabis sativa HOM05D003571 ORTHO05D004193 2.1e-26 122.5 79 75.9
AUR62034361 Chenopodium quinoa HOM05D003571 ORTHO05D004193 2.7e-26 122.1 76 76.3
Gohir.A04G073500 Gossypium hirsutum HOM05D003571 ORTHO05D004193 2.7e-26 122.1 67 85.1
Gohir.D04G112300 Gossypium hirsutum HOM05D003571 ORTHO05D004193 2.7e-26 122.1 67 85.1
Gorai.009G416700 Gossypium raimondii HOM05D003571 ORTHO05D004193 2.7e-26 122.1 67 85.1
Oeu005332.2 Olea europaea HOM05D003571 ORTHO05D004193 2.7e-26 122.1 80 76.2
Nn2g11512 Nelumbo nucifera HOM05D003571 ORTHO05D004193 3.5e-26 121.7 73 76.7
PSO063G1543 Papaver somniferum HOM05D003571 ORTHO05D004193 3.5e-26 121.7 74 81.1
Sabra16G0096300 Salix brachista HOM05D003571 ORTHO05D004193 3.5e-26 121.7 67 86.6
Ca_08847_v3 Cicer arietinum L. HOM05D003571 ORTHO05D004193 6.0e-26 120.9 80 77.5
Glyma.03G181400 Glycine max HOM05D003571 ORTHO05D004193 1.0e-25 120.2 80 72.5
PSO339G3261 Papaver somniferum HOM05D003571 ORTHO05D004193 1.0e-25 120.2 74 79.7
CDE04G1686 Ceratophyllum demersum HOM05D003571 ORTHO05D004193 1.3e-25 119.8 74 77.0
TPR.G16043 Trifolium pratense HOM05D003571 ORTHO05D004193 1.3e-25 119.8 80 76.2
Sc02g0001770 Simmondsia chinensis HOM05D003571 ORTHO05D004193 2.3e-25 119.0 73 78.1
TAR369G1024 Trochodendron aralioides HOM05D003571 ORTHO05D004193 3.0e-25 118.6 79 75.9
CDE06G0018 Ceratophyllum demersum HOM05D003571 ORTHO05D004193 3.9e-25 118.2 75 73.3
MSTRG.19160 Avicennia marina HOM05D003571 ORTHO05D004193 5.1e-25 117.9 72 77.8
DCAR_020834 Daucus carota HOM05D003571 ORTHO05D004193 6.7e-25 117.5 72 76.4
Medtr0041s0030 Medicago truncatula HOM05D003571 ORTHO05D004193 6.7e-25 117.5 80 75.0
Oeu016972.1 Olea europaea HOM05D003571 ORTHO05D004193 6.7e-25 117.5 69 82.6
Lj2C113T5 Lonicera japonica HOM05D003571 ORTHO05D004193 8.7e-25 117.1 69 81.2
Eucgr.K01247 Eucalyptus grandis HOM05D003571 ORTHO05D004193 1.1e-24 116.7 73 75.3
Sc20g0005320 Simmondsia chinensis HOM05D003571 ORTHO05D004193 1.1e-24 116.7 67 80.6
Ah.05g168560 Amaranthus hybridus HOM05D003571 ORTHO05D004193 1.5e-24 116.3 71 80.3
DCAR_009299 Daucus carota HOM05D003571 ORTHO05D004193 2.5e-24 115.5 72 75.0
Rhsim04G0146600 Rhododendron simsii HOM05D003571 ORTHO05D004193 5.6e-24 114.4 69 81.2
Peaxi162Scf00395g00044 Petunia axillaris HOM05D003571 ORTHO05D004193 9.6e-24 113.6 70 77.1
ATR0048G031 Amborella trichopoda HOM05D003571 ORTHO05D004193 6.2e-23 110.9 79 68.4
HanXRQChr01g0027351 Helianthus annuus HOM05D003571 ORTHO05D004193 8.2e-23 110.5 62 83.9
Psat3g041280 Pisum sativum HOM05D003571 ORTHO05D004193 1.4e-22 109.8 80 66.2
SGA_v2.0_scaffold126G33934 Striga asiatica HOM05D003571 ORTHO05D004193 1.4e-22 109.8 65 81.5
vmacro20027 Vaccinium macrocarpon HOM05D003571 ORTHO05D004193 2.4e-22 109.0 72 72.2
PSO339G5477 Papaver somniferum HOM05D003571 ORTHO05D004193 9.0e-22 107.1 74 68.9
PSO801G0607 Papaver somniferum HOM05D003571 ORTHO05D004193 9.0e-22 107.1 74 68.9
Rhsim04G0146300 Rhododendron simsii HOM05D003571 ORTHO05D004193 1.5e-21 106.3 69 78.3
Lsat_1_v5_gn_1_53261 Lactuca sativa HOM05D003571 ORTHO05D004193 2.6e-21 105.5 63 82.5
MBI07_g30986_MAGBIO Magnolia biondii HOM05D003571 ORTHO05D004193 2.6e-21 105.5 72 69.4
ECA248G2435 Erigeron canadensis HOM05D003571 ORTHO05D004193 1.0e-20 103.6 63 79.4
HanXRQChr11g0350181 Helianthus annuus HOM05D003571 ORTHO05D004193 1.7e-20 102.8 73 78.1
MSTRG.5747 Avicennia marina HOM05D003571 ORTHO05D004193 4.9e-20 101.3 65 75.4
AagrBONN_evm.TU.Sc2ySwM_368.249 Anthoceros agrestis HOM05D003571 ORTHO05D004193 8.4e-20 100.5 65 73.8
Cpa.g.sc390.2 Carica papaya HOM05D003571 ORTHO05D004193 1.4e-19 99.8 59 83.1
Os03g0700800 Oryza sativa ssp. japonica HOM05D003571 ORTHO05D004193 5.5e-19 97.8 66 72.7
Zm00001eb119690 Zea mays HOM05D003571 ORTHO05D004193 1.6e-18 96.3 64 71.9
SEGI_08907 Sequoiadendron giganteum HOM05D003571 ORTHO05D004193 2.1e-18 95.9 72 65.3
Pp3c27_2050 Physcomitrium patens HOM05D003571 ORTHO05D004193 6.0e-18 94.4 65 69.2
Os07g0155600 Oryza sativa ssp. japonica HOM05D003571 ORTHO05D004193 7.9e-18 94.0 58 77.6
Os07g0156732 Oryza sativa ssp. japonica HOM05D003571 ORTHO05D004193 7.9e-18 94.0 58 77.6
Os07g0157401 Oryza sativa ssp. japonica HOM05D003571 ORTHO05D004193 7.9e-18 94.0 58 77.6
HPP92_012165 Vanilla planifolia HOM05D003571 ORTHO05D004193 1.0e-17 93.6 55 78.2
MSTRG.26704 Avicennia marina HOM05D003571 ORTHO05D004193 8.7e-17 90.5 82 61.0
SMO334G0103 Selaginella moellendorffii HOM05D003571 ORTHO05D004193 3.3e-16 88.6 61 67.2
Pp3c16_16830 Physcomitrium patens HOM05D003571 ORTHO05D004193 5.7e-16 87.8 54 75.9
AUR62022345 Chenopodium quinoa HOM05D003571 ORTHO05D004193 8.2e-15 84.0 52 76.9
Mapoly0001s0226 Marchantia polymorpha HOM05D003571 ORTHO05D004193 6.9e-14 80.9 51 72.5
Actinidia19664 Actinidia chinensis HOM05D003571 ORTHO05D004193 2.0e-13 79.3 49 79.6
Lalb_Chr01g0018771 Lupinus albus HOM05D003571 ORTHO05D004193 1.9e-11 72.8 47 70.2


User provided reference genes

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