Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 5.1e-229 797.3 392 100.0
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 2.1e-198 695.7 391 87.2
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 8.0e-198 693.7 392 88.5
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 3.4e-180 635.2 353 89.5
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 2.4e-178 629.0 421 78.6
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 2.0e-177 625.9 413 78.7
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 1.7e-176 622.9 410 76.6
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 1.2e-174 616.7 408 76.7
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 2.1e-174 615.9 393 79.6
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 2.8e-174 615.5 396 79.0
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 4.7e-174 614.8 385 79.5
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 6.1e-174 614.4 362 84.3
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 1.7e-171 606.3 408 76.0
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.1e-170 603.6 402 76.6
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 2.4e-170 602.4 392 78.1
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 4.1e-170 601.7 408 74.8
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 4.6e-169 598.2 402 78.1
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 1.0e-168 597.0 409 76.0
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 1.9e-167 592.8 412 73.8
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 1.9e-167 592.8 409 75.1
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 2.5e-167 592.4 401 75.6
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 9.5e-167 590.5 403 74.9
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.6e-166 589.7 402 75.6
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 1.6e-166 589.7 427 71.7
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 2.8e-166 589.0 393 76.6
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 6.2e-166 587.8 412 73.8
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 1.4e-165 586.6 408 74.5
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 3.1e-165 585.5 343 82.5
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 1.5e-164 583.2 402 74.9
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 3.4e-164 582.0 409 74.1
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 1.3e-163 580.1 411 74.5
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 1.7e-163 579.7 394 77.2
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 2.2e-163 579.3 409 73.3
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 2.9e-163 578.9 385 75.8
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 3.7e-163 578.6 414 73.2
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 6.4e-163 577.8 412 72.8
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 1.1e-162 577.0 345 82.6
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 9.2e-162 573.9 409 72.6
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 3.5e-161 572.0 407 73.5
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 6.0e-161 571.2 412 72.8
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 7.8e-161 570.9 396 74.5
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 1.3e-160 570.1 416 71.9
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 2.3e-160 569.3 412 72.8
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 5.0e-160 568.2 412 72.8
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 5.0e-160 568.2 379 75.5
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 1.9e-159 566.2 395 72.7
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 4.3e-159 565.1 408 71.1
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.6e-158 562.0 408 71.6
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 3.1e-157 558.9 398 71.9
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 2.0e-156 556.2 379 75.5
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 3.4e-156 555.4 399 71.7
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 5.8e-156 554.7 351 78.9
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 5.8e-156 554.7 411 70.3
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 5.8e-156 554.7 398 71.4
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 2.9e-155 552.4 399 70.4
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 3.7e-155 552.0 343 79.9
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 6.4e-155 551.2 363 75.2
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 6.4e-155 551.2 353 77.9
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 8.3e-155 550.8 338 80.8
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 1.1e-154 550.4 336 79.8
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 3.2e-154 548.9 315 83.8
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 5.4e-154 548.1 419 68.3
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 1.6e-153 546.6 439 65.8
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 7.8e-153 544.3 294 87.1
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 1.3e-152 543.5 399 69.9
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 1.7e-152 543.1 353 78.2
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 8.6e-152 540.8 317 83.3
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 2.5e-151 539.3 292 86.6
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 2.5e-151 539.3 410 69.8
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 5.6e-151 538.1 349 77.7
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 9.5e-151 537.3 292 86.0
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 2.1e-150 536.2 301 84.7
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 3.6e-150 535.4 411 68.9
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 4.0e-149 531.9 294 85.4
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 6.8e-149 531.2 323 80.8
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 6.8e-149 531.2 321 81.0
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 1.2e-148 530.4 390 70.3
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 2.6e-148 529.3 348 77.9
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 2.6e-148 529.3 289 86.2
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 4.4e-148 528.5 334 78.4
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 5.8e-148 528.1 392 70.4
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 7.6e-148 527.7 337 76.9
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 9.9e-148 527.3 397 69.0
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 1.7e-147 526.6 289 85.5
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 2.2e-147 526.2 289 85.5
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 8.4e-147 524.2 289 85.8
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 1.1e-146 523.9 321 78.8
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 1.4e-146 523.5 411 67.2
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 1.4e-146 523.5 489 60.5
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 1.9e-146 523.1 289 85.5
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 5.4e-146 521.5 290 85.2
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 5.4e-146 521.5 290 85.2
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 1.6e-145 520.0 414 65.9
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 1.0e-144 517.3 347 73.2
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 5.1e-144 515.0 389 66.1
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.9e-143 513.1 393 66.2
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 1.6e-142 510.0 396 66.9
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 1.6e-142 510.0 401 67.3
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 4.7e-142 508.4 369 70.5
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 4.4e-140 501.9 352 73.0
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 2.9e-139 499.2 335 71.9
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 9.3e-138 494.2 374 68.2
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 9.3e-138 494.2 387 66.9
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 2.1e-137 493.0 266 85.7
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 1.9e-135 486.5 265 86.0
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 6.9e-133 478.0 266 84.6
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 9.0e-133 477.6 325 72.3
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 1.5e-132 476.9 337 69.4
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 2.0e-132 476.5 371 65.0
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 2.6e-132 476.1 453 56.3
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 1.1e-130 470.7 394 65.0
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 9.0e-125 451.1 394 61.2
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 1.9e-122 443.4 348 69.8
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 9.6e-119 431.0 351 60.4
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 1.2e-116 424.1 408 60.0
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 5.8e-116 421.8 285 68.8
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 2.2e-115 419.9 452 54.9
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 1.2e-113 414.1 219 89.5
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 3.7e-110 402.5 272 68.4
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 1.4e-109 400.6 274 66.8
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 1.3e-104 384.0 325 60.6
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 9.1e-101 371.3 401 55.1
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 1.1e-98 364.4 183 91.8
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 3.7e-94 349.4 398 52.0
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 2.2e-75 287.0 155 82.6
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 2.1e-73 280.4 147 86.4
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 2.0e-71 273.9 270 58.9
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 2.3e-48 197.2 177 63.3
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 4.0e-48 196.4 173 61.3
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 3.0e-43 180.3 120 75.0
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 3.9e-43 179.9 216 46.8
TAR636G3691 Trochodendron aralioides HOM05D005292 ORTHO05D006473 3.6e-41 173.3 128 70.3
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 1.2e-36 158.3 161 54.0
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.0e-35 155.2 94 71.3
Glyma.05G052200 Glycine max HOM05D005292 ORTHO05D006473 8.6e-35 152.1 145 62.1
SEGI_08273 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 4.9e-30 136.3 84 78.6
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 7.1e-29 132.5 66 87.9
MD06G1074800 Malus domestica HOM05D005292 ORTHO05D006473 3.9e-27 126.7 87 79.3
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.5e-26 124.8 66 80.3
SEGI_15988 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 2.0e-23 114.4 66 80.3
TWI81G0363 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 1.9e-21 107.8 71 73.2
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 2.1e-17 94.4 66 71.2
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 7.6e-15 85.9 42 85.7
MD06G1074700 Malus domestica HOM05D005292 ORTHO05D248125 3.3e-10 70.5 87 48.3
Peaxi162Scf00102g01237 Petunia axillaris HOM05D000023 ORTHO05D013611 4.5e-07 60.1 58 51.7
Lsat_1_v5_gn_8_121800 Lactuca sativa HOM05D001816 ORTHO05D002001 7.6e-07 59.3 225 29.8


User provided reference genes

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