Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012794 Carpinus fangiana HOM05D004313 ORTHO05D005036 8.2e-35 149.8 75 100.0
Cfa019038 Carpinus fangiana HOM05D004313 ORTHO05D005036 2.5e-23 111.7 63 92.1
Haze_07414 Corylus avellana HOM05D004313 ORTHO05D005036 2.5e-23 111.7 63 92.1
QL10p014006 Quercus lobata HOM05D004313 ORTHO05D005036 2.0e-20 102.1 62 82.3
CiPaw.11G034400 Carya illinoinensis HOM05D004313 ORTHO05D005036 9.7e-20 99.8 63 79.4
CiPaw.12G022100 Carya illinoinensis HOM05D004313 ORTHO05D005036 9.7e-20 99.8 62 82.3
ClCG06G016580 Citrullus lanatus HOM05D004313 ORTHO05D005036 3.1e-18 94.7 63 77.8
Manes.06G098800 Manihot esculenta HOM05D004313 ORTHO05D005036 7.0e-18 93.6 63 76.2
Thecc.03G071100 Theobroma cacao HOM05D004313 ORTHO05D005036 7.0e-18 93.6 63 73.0
Dinv13119 Davidia involucrata HOM05D004313 ORTHO05D005036 2.0e-17 92.0 63 73.0
Eucgr.B00381 Eucalyptus grandis HOM05D004313 ORTHO05D005036 2.0e-17 92.0 62 75.8
TWI60G1492 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 3.5e-17 91.3 63 76.2
Aqoxy3G03179 Aquilegia oxysepala HOM05D004313 ORTHO05D005036 4.5e-17 90.9 63 73.0
MELO3C017136.2 Cucumis melo HOM05D004313 ORTHO05D005036 4.5e-17 90.9 63 74.6
CsaV3_1G001930 Cucumis sativus L. HOM05D004313 ORTHO05D005036 1.0e-16 89.7 63 73.0
CANSAT80G2445 Cannabis sativa HOM05D004313 ORTHO05D005036 1.3e-16 89.4 58 75.9
Prupe.5G182200 Prunus persica HOM05D004313 ORTHO05D005036 1.3e-16 89.4 63 68.3
Nn4g22972 Nelumbo nucifera HOM05D004313 ORTHO05D005036 1.7e-16 89.0 63 68.3
Gohir.A07G071100 Gossypium hirsutum HOM05D004313 ORTHO05D005036 2.2e-16 88.6 62 69.4
Gorai.001G079800 Gossypium raimondii HOM05D004313 ORTHO05D005036 2.2e-16 88.6 62 69.4
Potri.012G073600 Populus trichocarpa HOM05D004313 ORTHO05D005036 2.2e-16 88.6 62 71.0
Potri.015G068600 Populus trichocarpa HOM05D004313 ORTHO05D005036 2.2e-16 88.6 75 62.7
Hma1.2p1_0002F.1_g003010 Hydrangea macrophylla HOM05D004313 ORTHO05D005036 2.9e-16 88.2 63 69.8
Phvul.003G195400 Phaseolus vulgaris HOM05D004313 ORTHO05D005036 2.9e-16 88.2 63 71.4
VMungo1215G1877 Vigna mungo HOM05D004313 ORTHO05D005036 2.9e-16 88.2 63 71.4
MSTRG.4395 Avicennia marina HOM05D004313 ORTHO05D005036 3.8e-16 87.8 63 71.4
Glyma.05G031900 Glycine max HOM05D004313 ORTHO05D005036 3.8e-16 87.8 63 71.4
Duzib205G0385 Durio zibethinus HOM05D004313 ORTHO05D005036 5.0e-16 87.4 63 68.3
Gohir.D07G075600 Gossypium hirsutum HOM05D004313 ORTHO05D005036 5.0e-16 87.4 62 67.7
Oeu022185.1 Olea europaea HOM05D004313 ORTHO05D005036 5.0e-16 87.4 63 71.4
PSO591G0306 Papaver somniferum HOM05D004313 ORTHO05D005036 5.0e-16 87.4 60 71.7
GSVIVG01007840001 Vitis vinifera HOM05D004313 ORTHO05D005036 5.0e-16 87.4 63 69.8
Actinidia04946 Actinidia chinensis HOM05D004313 ORTHO05D005036 6.5e-16 87.0 59 71.2
TWI81G0241 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 6.5e-16 87.0 61 73.8
Nitab4.5_0000003g0130 Nicotiana tabacum HOM05D004313 ORTHO05D005036 1.1e-15 86.3 63 68.3
Dinv07987 Davidia involucrata HOM05D004313 ORTHO05D005036 1.9e-15 85.5 63 69.8
Solyc06g071200.3 Solanum lycopersicum HOM05D004313 ORTHO05D005036 1.9e-15 85.5 63 68.3
MD06G1183500 Malus domestica HOM05D004313 ORTHO05D005036 2.5e-15 85.1 63 68.3
SalBow3G4066 Salvia bowleyana HOM05D004313 ORTHO05D005036 2.5e-15 85.1 63 68.3
COL.COLO4_07633 Corchorus olitorius HOM05D004313 ORTHO05D005036 3.2e-15 84.7 63 66.7
Glyma.17G094800 Glycine max HOM05D004313 ORTHO05D005036 3.2e-15 84.7 63 69.8
Lalb_Chr07g0182441 Lupinus albus HOM05D004313 ORTHO05D005036 3.2e-15 84.7 63 68.3
Nitab4.5_0000758g0080 Nicotiana tabacum HOM05D004313 ORTHO05D005036 3.2e-15 84.7 63 66.7
Lsat_1_v5_gn_4_106321 Lactuca sativa HOM05D004313 ORTHO05D005036 4.2e-15 84.3 63 68.3
Medtr4g107290 Medicago truncatula HOM05D004313 ORTHO05D005036 4.2e-15 84.3 63 68.3
Sopen06g027510 Solanum pennellii HOM05D004313 ORTHO05D005036 4.2e-15 84.3 63 66.7
HanXRQChr09g0271451 Helianthus annuus HOM05D004313 ORTHO05D005036 5.5e-15 84.0 63 69.8
MD14G1189400 Malus domestica HOM05D004313 ORTHO05D005036 5.5e-15 84.0 63 68.3
CSS0019418 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 7.2e-15 83.6 63 66.7
CAN.G628.58 Capsicum annuum HOM05D004313 ORTHO05D005036 7.2e-15 83.6 61 67.2
Duzib084G0573 Durio zibethinus HOM05D004313 ORTHO05D005036 7.2e-15 83.6 63 65.1
Lj4g0005973 Lotus japonicus HOM05D004313 ORTHO05D005036 7.2e-15 83.6 63 68.3
Peaxi162Scf00689g00546 Petunia axillaris HOM05D004313 ORTHO05D005036 7.2e-15 83.6 63 66.7
Psat4g054720 Pisum sativum HOM05D004313 ORTHO05D005036 9.4e-15 83.2 63 68.3
TPR.G38443 Trifolium pratense HOM05D004313 ORTHO05D005036 9.4e-15 83.2 63 68.3
Lj9A456G24 Lonicera japonica HOM05D004313 ORTHO05D005036 1.2e-14 82.8 59 72.9
TAR374G1555 Trochodendron aralioides HOM05D004313 ORTHO05D005036 1.2e-14 82.8 63 68.3
Hund09391 Selenicereus undatus HOM05D004313 ORTHO05D005036 1.6e-14 82.4 58 70.7
Ciclev10018728m.g Citrus clementina HOM05D004313 ORTHO05D005036 2.1e-14 82.0 61 63.9
Ca_21869_v3 Cicer arietinum L. HOM05D004313 ORTHO05D005036 2.7e-14 81.6 63 69.8
vmacro19341 Vaccinium macrocarpon HOM05D004313 ORTHO05D005036 2.7e-14 81.6 59 66.1
EL10Ac5g10873 Beta vulgaris HOM05D004313 ORTHO05D005036 6.1e-14 80.5 59 66.1
arahy.Tifrunner.gnm1.ann1.PL6DWX Arachis hypogaea HOM05D004313 ORTHO05D005036 8.0e-14 80.1 63 68.3
arahy.Tifrunner.gnm1.ann1.ZX441X Arachis hypogaea HOM05D004313 ORTHO05D005036 8.0e-14 80.1 63 68.3
THA.LOC104818250 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 8.0e-14 80.1 69 63.8
AUR62008311 Chenopodium quinoa HOM05D004313 ORTHO05D005036 1.0e-13 79.7 59 67.8
Cc04_g16080 Coffea canephora HOM05D004313 ORTHO05D005036 1.4e-13 79.3 63 61.9
Rhsim08G0163500 Rhododendron simsii HOM05D004313 ORTHO05D005036 1.4e-13 79.3 59 62.7
THA.LOC104819430 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 1.4e-13 79.3 64 64.1
CSS0037121 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 3.0e-13 78.2 57 68.4
Cpa.g.sc391.3 Carica papaya HOM05D004313 ORTHO05D005036 3.0e-13 78.2 75 56.0
Thhalv10003602m.g Eutrema salsugineum HOM05D004313 ORTHO05D005036 3.0e-13 78.2 64 62.5
Sp2g25780 Schrenkiella parvula HOM05D004313 ORTHO05D005036 4.0e-13 77.8 64 64.1
AUR62021785 Chenopodium quinoa HOM05D004313 ORTHO05D005036 6.8e-13 77.0 59 64.4
AT5G62600 Arabidopsis thaliana HOM05D004313 ORTHO05D005036 8.8e-13 76.6 65 60.0
A06p29280 Brassica napus HOM05D004313 ORTHO05D005036 8.8e-13 76.6 64 62.5
Ah.11g045580 Amaranthus hybridus HOM05D004313 ORTHO05D005036 1.2e-12 76.3 71 54.9
AL8G39490 Arabidopsis lyrata HOM05D004313 ORTHO05D005036 1.2e-12 76.3 65 60.0
FAN04G0114 Fragaria x ananassa HOM05D004313 ORTHO05D005036 1.2e-12 76.3 65 58.5
CARHR276380 Cardamine hirsuta HOM05D004313 ORTHO05D005036 1.5e-12 75.9 66 59.1
FAN08G2034 Fragaria x ananassa HOM05D004313 ORTHO05D005036 1.5e-12 75.9 65 58.5
FAN13G2316 Fragaria x ananassa HOM05D004313 ORTHO05D005036 1.5e-12 75.9 65 58.5
Carub.0008s2330 Capsella rubella HOM05D004313 ORTHO05D005036 2.0e-12 75.5 65 58.5
SGA_v2.0_scaffold114G31867 Striga asiatica HOM05D004313 ORTHO05D005036 2.0e-12 75.5 57 61.4
BcaC01g02491 Brassica carinata HOM05D004313 ORTHO05D005036 2.6e-12 75.1 64 60.9
BcaC04g23404 Brassica carinata HOM05D004313 ORTHO05D005036 2.6e-12 75.1 64 60.9
BcaNung01388 Brassica carinata HOM05D004313 ORTHO05D005036 2.6e-12 75.1 64 60.9
A09p07780 Brassica napus HOM05D004313 ORTHO05D005036 2.6e-12 75.1 64 60.9
C03p64200 Brassica napus HOM05D004313 ORTHO05D005036 2.6e-12 75.1 64 60.9
BolC3t18678H Brassica oleracea HOM05D004313 ORTHO05D005036 2.6e-12 75.1 64 60.9
BolC9t53779H Brassica oleracea HOM05D004313 ORTHO05D005036 2.6e-12 75.1 64 60.9
BraA06t25884Z Brassica rapa HOM05D004313 ORTHO05D005036 2.6e-12 75.1 59 61.0
BraA09t36426Z Brassica rapa HOM05D004313 ORTHO05D005036 2.6e-12 75.1 64 60.9
FvH4_5g16030 Fragaria vesca HOM05D004313 ORTHO05D005036 2.6e-12 75.1 65 56.9
FAN18G3297 Fragaria x ananassa HOM05D004313 ORTHO05D005036 2.6e-12 75.1 65 56.9
Sed0007676 Sechium edule HOM05D004313 ORTHO05D005036 2.6e-12 75.1 54 70.4
MBI18_g11290_MAGBIO Magnolia biondii HOM05D004313 ORTHO05D005036 3.4e-12 74.7 73 56.2
ATR0322G074 Amborella trichopoda HOM05D004313 ORTHO05D005036 4.4e-12 74.3 63 58.7
C09p08680 Brassica napus HOM05D004313 ORTHO05D005036 4.4e-12 74.3 64 60.9
RcHm_v2.0_Chr7g0180041 Rosa chinensis HOM05D004313 ORTHO05D005036 5.7e-12 73.9 53 66.0
Sc12g0005870 Simmondsia chinensis HOM05D004313 ORTHO05D005036 5.7e-12 73.9 58 67.2
DCAR_031273 Daucus carota HOM05D004313 ORTHO05D005036 1.7e-11 72.4 58 58.6
Aa31LG11G1040 Aethionema arabicum HOM05D004313 ORTHO05D005036 2.8e-11 71.6 64 57.8
SEGI_36637 Sequoiadendron giganteum HOM05D004313 ORTHO05D005036 3.1e-10 68.2 75 52.0
unitig_744.g24392 Utricularia gibba HOM05D004313 ORTHO05D005036 3.1e-10 68.2 61 54.1
unitig_21.g20456 Utricularia gibba HOM05D004313 ORTHO05D005036 4.1e-10 67.8 59 57.6
Os10g0477800 Oryza sativa ssp. japonica HOM05D004313 ORTHO05D005036 5.3e-10 67.4 57 57.9
SHI08465 Sapria himalayana HOM05D004313 ORTHO05D005036 5.3e-10 67.4 58 56.9
HPP92_025604 Vanilla planifolia HOM05D004313 ORTHO05D005036 5.9e-09 63.9 77 49.4
Zm00001eb045810 Zea mays HOM05D004313 ORTHO05D005036 7.7e-09 63.5 61 52.5
Zm00001eb221820 Zea mays HOM05D004313 ORTHO05D005036 2.2e-08 62.0 61 49.2
SMO144G0109 Selaginella moellendorffii HOM05D004313 ORTHO05D005036 1.9e-07 58.9 61 50.8
Mapoly0187s0007 Marchantia polymorpha HOM05D004313 ORTHO05D005036 8.0e-06 53.5 63 46.0


User provided reference genes

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