Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012756 Carpinus fangiana HOM05D006398 ORTHO05D007983 2.1e-39 165.6 110 100.0
Cfa011161 Carpinus fangiana HOM05D006398 ORTHO05D007983 3.3e-32 141.7 104 85.6
Cfa007121 Carpinus fangiana HOM05D006398 ORTHO05D007983 2.9e-28 128.6 102 88.2
Cfa000559 Carpinus fangiana HOM05D006398 ORTHO05D007983 1.6e-26 122.9 97 72.2
CiPaw.03G212200 Carya illinoinensis HOM05D006398 ORTHO05D007983 4.6e-26 121.3 106 76.4
Haze_03650 Corylus avellana HOM05D000071 ORTHO05D007983 6.0e-26 120.9 102 87.3
Prupe.7G188600 Prunus persica HOM05D006398 ORTHO05D007983 5.6e-24 114.4 99 66.7
COL.COLO4_15698 Corchorus olitorius HOM05D006398 ORTHO05D007983 2.1e-23 112.5 101 70.3
Gohir.A07G076575 Gossypium hirsutum HOM05D006398 ORTHO05D007983 2.1e-23 112.5 101 77.2
Thecc.04G122700 Theobroma cacao HOM05D006398 ORTHO05D007983 3.6e-23 111.7 101 63.4
FAN23G0152 Fragaria x ananassa HOM05D006398 ORTHO05D007983 1.1e-22 110.2 98 63.3
QL06p053503 Quercus lobata HOM05D006398 ORTHO05D007983 1.4e-22 109.8 106 70.8
RcHm_v2.0_Chr2g0096641 Rosa chinensis HOM05D006398 ORTHO05D007983 1.8e-22 109.4 98 79.6
Duzib133G0235 Durio zibethinus HOM05D006398 ORTHO05D007983 5.2e-22 107.8 101 73.3
FAN26G0304 Fragaria x ananassa HOM05D006398 ORTHO05D007983 5.2e-22 107.8 98 62.2
FvH4_1g09810 Fragaria vesca HOM05D006398 ORTHO05D007983 8.9e-22 107.1 98 62.2
FAN19G1193 Fragaria x ananassa HOM05D006398 ORTHO05D007983 8.9e-22 107.1 98 62.2
Gorai.001G086400 Gossypium raimondii HOM05D006398 ORTHO05D007983 1.5e-21 106.3 101 72.3
Manes.02G117704 Manihot esculenta HOM05D006398 ORTHO05D007983 1.5e-21 106.3 102 61.8
Gohir.D07G081300 Gossypium hirsutum HOM05D006398 ORTHO05D007983 2.6e-21 105.5 101 71.3
Dinv24399 Davidia involucrata HOM05D006398 ORTHO05D007983 2.2e-20 102.4 91 62.6
Dinv28289 Davidia involucrata HOM05D006398 ORTHO05D007983 2.2e-20 102.4 91 62.6
FAN28G0584 Fragaria x ananassa HOM05D006398 ORTHO05D007983 2.2e-20 102.4 116 56.9
CsaV3_6G047960 Cucumis sativus L. HOM05D006398 ORTHO05D007983 3.8e-20 101.7 101 58.4
Atru.chr3.7 Acer truncatum HOM05D006398 ORTHO05D007983 4.9e-20 101.3 107 58.9
Eucgr.J02575 Eucalyptus grandis HOM05D006398 ORTHO05D007983 6.4e-20 100.9 102 73.5
Hma1.2p1_0085F.1_g044270 Hydrangea macrophylla HOM05D006398 ORTHO05D007983 8.4e-20 100.5 98 56.1
Lalb_Chr16g0380261 Lupinus albus HOM05D006398 ORTHO05D007983 8.4e-20 100.5 99 65.7
Actinidia28761 Actinidia chinensis HOM05D006398 ORTHO05D007983 1.1e-19 100.1 106 64.2
Dinv19113 Davidia involucrata HOM05D006398 ORTHO05D007983 1.4e-19 99.8 99 56.6
Manes.01G158600 Manihot esculenta HOM05D006398 ORTHO05D007983 1.4e-19 99.8 101 60.4
Ciclev10026700m.g Citrus clementina HOM05D006398 ORTHO05D007983 7.1e-19 97.4 106 66.0
TPR.G33762 Trifolium pratense HOM05D006398 ORTHO05D007983 9.2e-19 97.1 101 54.5
MELO3C007985.2 Cucumis melo HOM05D006398 ORTHO05D007983 1.2e-18 96.7 102 57.8
Gohir.A11G167300 Gossypium hirsutum HOM05D006398 ORTHO05D007983 1.2e-18 96.7 94 71.3
Gohir.D11G173600 Gossypium hirsutum HOM05D006398 ORTHO05D007983 1.2e-18 96.7 94 71.3
Gorai.007G185900 Gossypium raimondii HOM05D006398 ORTHO05D007983 1.2e-18 96.7 94 71.3
Medtr5g025015 Medicago truncatula HOM05D006398 ORTHO05D007983 1.2e-18 96.7 103 52.4
CSS0002146 Camellia sinensis var. sinensis HOM05D006398 ORTHO05D007983 2.1e-18 95.9 106 54.7
CSS0046434 Camellia sinensis var. sinensis HOM05D006398 ORTHO05D007983 2.1e-18 95.9 106 54.7
PSO017G7180 Papaver somniferum HOM05D006398 ORTHO05D007983 2.1e-18 95.9 101 55.4
Sed0010545 Sechium edule HOM05D006398 ORTHO05D007983 2.1e-18 95.9 90 62.2
PSO017G0885 Papaver somniferum HOM05D006398 ORTHO05D007983 2.7e-18 95.5 101 55.4
TAR381G1497 Trochodendron aralioides HOM05D006398 ORTHO05D007983 3.5e-18 95.1 97 57.7
CANSAT56G1034 Cannabis sativa HOM05D006398 ORTHO05D007983 6.0e-18 94.4 101 71.3
Nn6g31587 Nelumbo nucifera HOM05D006398 ORTHO05D007983 6.0e-18 94.4 97 57.7
DCAR_014127 Daucus carota HOM05D006398 ORTHO05D007983 7.8e-18 94.0 94 58.5
Lj2g0016631 Lotus japonicus HOM05D006398 ORTHO05D007983 7.8e-18 94.0 98 60.2
Ca_25041_v3 Cicer arietinum L. HOM05D006398 ORTHO05D007983 1.3e-17 93.2 100 54.0
MD15G1226600 Malus domestica HOM05D006398 ORTHO05D007983 1.3e-17 93.2 100 59.0
PGR119G1180 Punica granatum HOM05D006398 ORTHO05D007983 1.3e-17 93.2 91 76.9
MBI04_g11522_MAGBIO Magnolia biondii HOM05D006398 ORTHO05D007983 3.0e-17 92.0 90 60.0
Psat2g147080 Pisum sativum HOM05D006398 ORTHO05D007983 3.9e-17 91.7 99 52.5
MSTRG.19082 Avicennia marina HOM05D006398 ORTHO05D007983 5.1e-17 91.3 92 63.0
TAR376G1029 Trochodendron aralioides HOM05D006398 ORTHO05D007983 5.1e-17 91.3 94 56.4
vmacro20410 Vaccinium macrocarpon HOM05D006398 ORTHO05D007983 6.6e-17 90.9 94 54.3
Rhsim10G0190200 Rhododendron simsii HOM05D006398 ORTHO05D007983 8.7e-17 90.5 92 55.4
Sed0016714 Sechium edule HOM05D006398 ORTHO05D007983 1.1e-16 90.1 85 74.1
Glyma.11G089000 Glycine max HOM05D006398 ORTHO05D007983 1.9e-16 89.4 101 68.3
Lj4P245T44 Lonicera japonica HOM05D006398 ORTHO05D007983 4.3e-16 88.2 99 53.5
PGR042G1229 Punica granatum HOM05D006398 ORTHO05D007983 1.6e-15 86.3 91 72.5
Potri.011G146400 Populus trichocarpa HOM05D006398 ORTHO05D007983 2.1e-15 85.9 101 50.5
Oeu024785.2 Olea europaea HOM05D006398 ORTHO05D007983 2.8e-15 85.5 106 50.0
TWI53G1768 Tripterygium wilfordii HOM05D006398 ORTHO05D007983 2.8e-15 85.5 95 69.5
Oeu000786.1 Olea europaea HOM05D006398 ORTHO05D007983 4.7e-15 84.7 92 66.3
Glyma.01G155800 Glycine max HOM05D006398 ORTHO05D007983 8.1e-15 84.0 101 66.3
MD02G1107400 Malus domestica HOM05D006398 ORTHO05D007983 1.8e-14 82.8 85 58.8
Nitab4.5_0011544g0020 Nicotiana tabacum HOM05D006398 ORTHO05D007983 3.1e-14 82.0 97 49.5
Sabra11G0131300 Salix brachista HOM05D006398 ORTHO05D007983 3.1e-14 82.0 98 50.0
VMungo1215G0575 Vigna mungo HOM05D006398 ORTHO05D007983 3.1e-14 82.0 98 69.4
Nitab4.5_0012518g0010 Nicotiana tabacum HOM05D006398 ORTHO05D007983 4.0e-14 81.6 96 51.0
Phvul.002G119800 Phaseolus vulgaris HOM05D006398 ORTHO05D007983 4.0e-14 81.6 97 67.0
SalBow3G3387 Salvia bowleyana HOM05D006398 ORTHO05D007983 5.2e-14 81.3 92 53.3
HanXRQChr10g0316121 Helianthus annuus HOM05D006398 ORTHO05D007983 9.0e-14 80.5 91 56.0
Aqoxy5G00947 Aquilegia oxysepala HOM05D006398 ORTHO05D007983 1.2e-13 80.1 99 57.6
ATR0605G223 Amborella trichopoda HOM05D006398 ORTHO05D007983 2.0e-13 79.3 104 61.5
ECA238G1438 Erigeron canadensis HOM05D006398 ORTHO05D007983 2.2e-12 75.9 89 56.2
Sopen02g017390 Solanum pennellii HOM05D006398 ORTHO05D007983 4.9e-12 74.7 95 47.4
Solyc02g068290.2 Solanum lycopersicum HOM05D006398 ORTHO05D007983 6.4e-12 74.3 95 47.4
TAR628G0945 Trochodendron aralioides HOM05D006398 ORTHO05D007983 6.4e-12 74.3 62 66.1
Peaxi162Scf00981g00021 Petunia axillaris HOM05D006398 ORTHO05D007983 8.4e-12 73.9 95 53.7
Hma1.2p1_0353F.1_g133130 Hydrangea macrophylla HOM05D006398 ORTHO05D007983 4.2e-11 71.6 106 41.5
Sabra16G0308300 Salix brachista HOM05D006398 ORTHO05D007983 7.1e-11 70.9 100 46.0
PGSC0003DMG400009426 Solanum tuberosum HOM05D006398 ORTHO05D007983 7.1e-11 70.9 95 46.3
Lsat_1_v5_gn_2_72860 Lactuca sativa HOM05D006398 ORTHO05D007983 3.5e-10 68.6 67 53.7
Ah.02g115220 Amaranthus hybridus HOM05D006398 ORTHO05D007983 4.6e-10 68.2 98 43.9
EL10Ac5g11754 Beta vulgaris HOM05D006398 ORTHO05D007983 6.0e-10 67.8 96 42.7
CAN.G883.23 Capsicum annuum HOM05D006398 ORTHO05D007983 6.0e-10 67.8 92 60.9
Migut.J00328 Erythranthe guttata HOM05D006398 ORTHO05D007983 2.3e-09 65.9 92 45.7
Lalb_Chr05g0215011 Lupinus albus HOM05D006398 ORTHO05D007983 2.3e-09 65.9 96 59.4
HPP92_018846 Vanilla planifolia HOM05D006398 ORTHO05D007983 3.0e-09 65.5 90 45.6
HPP92_018898 Vanilla planifolia HOM05D006398 ORTHO05D007983 1.9e-08 62.8 90 45.6
Thhalv10010838m.g Eutrema salsugineum HOM05D006398 ORTHO05D007983 3.3e-08 62.0 91 58.2
CDE06G2001 Ceratophyllum demersum HOM05D006398 ORTHO05D007983 1.3e-07 60.1 95 42.1
AT3G51500 Arabidopsis thaliana HOM05D006398 ORTHO05D007983 1.6e-07 59.7 92 60.9
SGA_v2.0_scaffold126G33784 Striga asiatica HOM05D006398 ORTHO05D007983 1.6e-07 59.7 95 41.1
Sc03g0004180 Simmondsia chinensis HOM05D006398 ORTHO05D007983 2.1e-07 59.3 98 60.2
Zm00001eb236520 Zea mays HOM05D006398 ORTHO05D007983 4.8e-07 58.2 90 61.1
THA.LOC109117268 Tarenaya hassleriana HOM05D006398 ORTHO05D007983 6.2e-07 57.8 88 61.4
Sp5g10740 Schrenkiella parvula HOM05D006398 ORTHO05D007983 8.1e-07 57.4 91 56.0
Aa31LG4G7260 Aethionema arabicum HOM05D000087 ORTHO05D002585 1.1e-06 57.0 62 74.2
arahy.Tifrunner.gnm1.ann1.GQ5KDA Arachis hypogaea HOM05D006398 ORTHO05D007983 1.4e-06 56.6 45 66.7
Carub.0005s1788 Capsella rubella HOM05D006398 ORTHO05D007983 1.8e-06 56.2 88 61.4
CDE04G3216 Ceratophyllum demersum HOM05D006398 ORTHO05D007983 6.9e-06 54.3 97 42.3
SHI11157 Sapria himalayana HOM05D006398 ORTHO05D007983 6.9e-06 54.3 49 61.2


User provided reference genes

Program Settings