Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012713 Carpinus fangiana HOM05D005079 ORTHO05D006362 0.0e+00 1393.3 672 100.0
Haze_07920 Corylus avellana HOM05D005079 ORTHO05D006362 0.0e+00 1357.8 672 96.9
CiPaw.11G153800 Carya illinoinensis HOM05D005079 ORTHO05D006362 0.0e+00 1160.6 724 78.0
QL12p012230 Quercus lobata HOM05D005079 ORTHO05D006362 0.0e+00 1157.1 727 77.0
Prupe.5G069000 Prunus persica HOM05D005079 ORTHO05D006362 2.1e-291 1005.4 702 69.1
GSVIVG01001320001 Vitis vinifera HOM05D005079 ORTHO05D006362 2.3e-290 1001.9 725 68.0
Duzib205G0133 Durio zibethinus HOM05D005079 ORTHO05D006362 8.9e-290 1000.0 717 67.2
TAR629G2205 Trochodendron aralioides HOM05D005079 ORTHO05D006362 1.5e-289 999.2 714 67.2
COL.COLO4_37183 Corchorus olitorius HOM05D005079 ORTHO05D006362 2.6e-289 998.4 696 68.8
MD04G1063800 Malus domestica HOM05D005079 ORTHO05D006362 3.4e-289 998.0 703 68.0
Gohir.A03G008400 Gossypium hirsutum HOM05D005079 ORTHO05D006362 1.7e-285 985.7 716 65.5
Gorai.003G171100 Gossypium raimondii HOM05D005079 ORTHO05D006362 1.1e-284 983.0 716 65.5
Thecc.03G252100 Theobroma cacao HOM05D005079 ORTHO05D006362 5.6e-284 980.7 714 66.4
Potri.003G076500 Populus trichocarpa HOM05D005079 ORTHO05D006362 1.2e-281 973.0 723 65.7
Hma1.2p1_1172F.1_g263540 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 9.9e-281 969.9 703 66.6
Gohir.D03G162500 Gossypium hirsutum HOM05D005079 ORTHO05D006362 1.7e-280 969.1 716 65.4
TWI81G0601 Tripterygium wilfordii HOM05D005079 ORTHO05D006362 1.6e-278 962.6 732 64.3
RcHm_v2.0_Chr7g0203171 Rosa chinensis HOM05D005079 ORTHO05D006362 1.7e-277 959.1 701 66.8
FAN18G1282 Fragaria x ananassa HOM05D005079 ORTHO05D006362 5.6e-276 954.1 711 65.0
CANSAT21G1873 Cannabis sativa HOM05D005079 ORTHO05D006362 7.3e-276 953.7 713 65.4
FvH4_5g18820 Fragaria vesca HOM05D005079 ORTHO05D006362 8.1e-275 950.3 711 65.0
Sabra03G0047100 Salix brachista HOM05D005079 ORTHO05D006362 1.1e-274 949.9 702 65.4
CsaV3_5G004210 Cucumis sativus L. HOM05D005079 ORTHO05D006362 3.1e-274 948.3 720 64.0
FAN04G2358 Fragaria x ananassa HOM05D005079 ORTHO05D006362 2.0e-273 945.7 701 65.2
MELO3C005534.2 Cucumis melo HOM05D005079 ORTHO05D006362 3.2e-271 938.3 720 63.6
Cpa.g.sc29.152 Carica papaya HOM05D005079 ORTHO05D006362 4.2e-271 937.9 709 65.0
Nn1g01009 Nelumbo nucifera HOM05D005079 ORTHO05D006362 1.6e-270 936.0 728 63.9
Glyma.05G059000 Glycine max HOM05D005079 ORTHO05D006362 6.0e-270 934.1 706 65.0
vmacro00317 Vaccinium macrocarpon HOM05D005079 ORTHO05D006362 1.3e-269 932.9 714 63.6
Ciclev10023597m.g Citrus clementina HOM05D005079 ORTHO05D006362 3.0e-269 931.8 701 65.0
Lj4g0012374 Lotus japonicus HOM05D005079 ORTHO05D006362 2.5e-268 928.7 704 64.8
Psat4g071960 Pisum sativum HOM05D005079 ORTHO05D006362 7.3e-268 927.2 709 63.3
Hma1.2p1_1786F.1_g302370 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 4.8e-267 924.5 784 59.2
Rhsim02G0165500 Rhododendron simsii HOM05D005079 ORTHO05D006362 6.2e-267 924.1 699 64.2
Aqoxy7G00758 Aquilegia oxysepala HOM05D005079 ORTHO05D006362 2.6e-265 918.7 702 63.8
Dinv39143 Davidia involucrata HOM05D005079 ORTHO05D006362 3.4e-265 918.3 577 74.9
Actinidia14431 Actinidia chinensis HOM05D005079 ORTHO05D006362 2.2e-264 915.6 704 64.2
Ca_21961_v3 Cicer arietinum L. HOM05D005079 ORTHO05D006362 6.4e-264 914.1 699 63.2
Lalb_Chr16g0386651 Lupinus albus HOM05D005079 ORTHO05D006362 1.1e-263 913.3 709 64.5
Sed0023601 Sechium edule HOM05D005079 ORTHO05D006362 1.9e-263 912.5 703 63.2
TPR.G37701 Trifolium pratense HOM05D005079 ORTHO05D006362 6.0e-262 907.5 703 63.4
Eucgr.D02075 Eucalyptus grandis HOM05D005079 ORTHO05D006362 1.0e-261 906.7 706 62.3
FAN08G1452 Fragaria x ananassa HOM05D005079 ORTHO05D006362 1.3e-261 906.4 717 62.6
Medtr4g100980 Medicago truncatula HOM05D005079 ORTHO05D006362 1.9e-260 902.5 699 63.4
Cc08_g12490 Coffea canephora HOM05D005079 ORTHO05D006362 4.8e-259 897.9 719 61.1
MBI04_g09493_MAGBIO Magnolia biondii HOM05D005079 ORTHO05D006362 4.0e-258 894.8 732 61.1
PGR031G3122 Punica granatum HOM05D005079 ORTHO05D006362 6.9e-258 894.0 704 61.5
Hma1.2p1_1172F.1_g263550 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 4.5e-257 891.3 573 72.3
SalBow6G6450 Salvia bowleyana HOM05D005079 ORTHO05D006362 4.9e-256 887.9 728 59.3
Atru.chr9.1320 Acer truncatum HOM05D005079 ORTHO05D006362 7.1e-255 884.0 637 68.6
HanXRQChr17g0549661 Helianthus annuus HOM05D005079 ORTHO05D006362 1.6e-254 882.9 712 59.4
CSS0023122 Camellia sinensis var. sinensis HOM05D005079 ORTHO05D006362 7.9e-254 880.6 729 60.4
Sc01g0008470 Simmondsia chinensis HOM05D005079 ORTHO05D006362 1.0e-253 880.2 712 60.5
Manes.01G080200 Manihot esculenta HOM05D005079 ORTHO05D006362 1.8e-253 879.4 706 63.0
PSO017G3550 Papaver somniferum HOM05D005079 ORTHO05D006362 3.3e-252 875.2 720 59.6
Phvul.006G006200 Phaseolus vulgaris HOM05D005079 ORTHO05D006362 1.4e-250 869.8 694 62.4
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 1.0e-248 863.6 718 58.9
VMungo0540G1603 Vigna mungo HOM05D005079 ORTHO05D006362 2.2e-248 862.4 688 62.1
Migut.A00986 Erythranthe guttata HOM05D005079 ORTHO05D006362 5.5e-247 857.8 731 57.7
MSTRG.25528 Avicennia marina HOM05D005079 ORTHO05D006362 9.3e-247 857.1 735 57.6
Sp7g15190 Schrenkiella parvula HOM05D005079 ORTHO05D006362 1.9e-244 849.4 721 57.8
Solyc06g060670.4 Solanum lycopersicum HOM05D005079 ORTHO05D006362 7.4e-244 847.4 736 56.4
ClCG01G004030 Citrullus lanatus HOM05D005079 ORTHO05D006362 1.3e-243 846.7 720 59.3
Sopen06g020790 Solanum pennellii HOM05D005079 ORTHO05D006362 1.3e-243 846.7 715 57.5
Hund11595 Selenicereus undatus HOM05D005079 ORTHO05D006362 8.2e-243 844.0 728 57.3
Nitab4.5_0000618g0020 Nicotiana tabacum HOM05D005079 ORTHO05D006362 1.4e-242 843.2 719 57.2
ECA232G1687 Erigeron canadensis HOM05D005079 ORTHO05D006362 1.8e-242 842.8 704 58.1
CAN.G1037.9 Capsicum annuum HOM05D005079 ORTHO05D006362 4.1e-242 841.6 714 57.0
Aa31LG2G12700 Aethionema arabicum HOM05D005079 ORTHO05D006362 6.9e-242 840.9 725 57.7
BcaC09g50374 Brassica carinata HOM05D005079 ORTHO05D006362 6.9e-242 840.9 701 58.6
BcaNung00170 Brassica carinata HOM05D005079 ORTHO05D006362 4.5e-241 838.2 702 57.8
ATR0317G049 Amborella trichopoda HOM05D005079 ORTHO05D006362 1.0e-240 837.0 703 57.8
C01p26130 Brassica napus HOM05D005079 ORTHO05D006362 1.4e-239 833.2 701 57.8
BolC1t02557H Brassica oleracea HOM05D005079 ORTHO05D006362 4.2e-239 831.6 701 57.6
CARHR223060 Cardamine hirsuta HOM05D005079 ORTHO05D006362 9.3e-239 830.5 718 57.0
A01p20660 Brassica napus HOM05D005079 ORTHO05D006362 2.7e-238 828.9 701 57.2
BraA01t02000Z Brassica rapa HOM05D005079 ORTHO05D006362 7.9e-238 827.4 701 57.1
AUR62042789 Chenopodium quinoa HOM05D005079 ORTHO05D006362 1.0e-237 827.0 709 56.6
Carub.0007s2483 Capsella rubella HOM05D005079 ORTHO05D006362 1.8e-237 826.2 719 57.2
Thhalv10024535m.g Eutrema salsugineum HOM05D005079 ORTHO05D006362 8.7e-237 823.9 723 57.1
AL7G38200 Arabidopsis lyrata HOM05D005079 ORTHO05D006362 1.1e-236 823.5 724 56.6
THA.LOC104815493 Tarenaya hassleriana HOM05D005079 ORTHO05D006362 1.5e-236 823.2 716 57.5
Lj8C262G4 Lonicera japonica HOM05D005079 ORTHO05D006362 9.7e-236 820.5 643 62.4
EL10Ac5g13073 Beta vulgaris HOM05D005079 ORTHO05D006362 1.6e-235 819.7 703 56.5
AT4G16570 Arabidopsis thaliana HOM05D005079 ORTHO05D006362 2.2e-235 819.3 703 58.0
Zm00001eb379320 Zea mays HOM05D005079 ORTHO05D006362 4.1e-226 788.5 710 54.8
Os06g0105500 Oryza sativa ssp. japonica HOM05D005079 ORTHO05D006362 2.6e-225 785.8 703 53.6
SGA_v2.0_scaffold120G32882 Striga asiatica HOM05D005079 ORTHO05D006362 1.3e-224 783.5 729 54.6
Migut.A00942 Erythranthe guttata HOM05D005079 ORTHO05D006362 8.0e-206 721.1 518 63.5
AUR62007514 Chenopodium quinoa HOM05D005079 ORTHO05D006362 2.0e-204 716.5 709 51.6
Peaxi162Scf02065g00020 Petunia axillaris HOM05D005079 ORTHO05D006362 2.2e-203 713.0 574 60.8
Ah.12g056870 Amaranthus hybridus HOM05D005079 ORTHO05D006362 9.5e-199 697.6 727 49.2
Nitab4.5_0008754g0010 Nicotiana tabacum HOM05D005079 ORTHO05D006362 1.4e-197 693.7 784 48.2
HPP92_008921 Vanilla planifolia HOM05D005079 ORTHO05D006362 3.9e-184 649.0 518 57.7
unitig_744.g24463 Utricularia gibba HOM05D005079 ORTHO05D006362 1.0e-181 641.0 705 46.7
Pp3c6_22100 Physcomitrium patens HOM05D005079 ORTHO05D006362 5.6e-151 538.9 728 39.4
AagrBONN_evm.TU.Sc2ySwM_344.1170 Anthoceros agrestis HOM05D005079 ORTHO05D006362 3.1e-149 533.1 762 37.5
SMO365G0062 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 3.0e-144 516.5 688 41.9
AUR62044148 Chenopodium quinoa HOM05D005079 ORTHO05D006362 7.1e-138 495.4 623 45.4
Lsat_1_v5_gn_5_188000 Lactuca sativa HOM05D005079 ORTHO05D006362 1.6e-137 494.2 459 55.6
Oeu020426.1 Olea europaea HOM05D005079 ORTHO05D006362 4.6e-137 492.7 455 56.3
CSS0009127 Camellia sinensis var. sinensis HOM05D005079 ORTHO05D006362 1.8e-136 490.7 710 42.7
FAN13G2148 Fragaria x ananassa HOM05D005079 ORTHO05D006362 7.6e-132 475.3 646 42.0
SMO014G0029 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 3.7e-126 456.4 686 39.5
SMO176G0009 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 3.8e-123 446.4 690 38.8
Migut.N00546 Erythranthe guttata HOM05D005079 ORTHO05D006362 1.2e-121 441.4 413 54.5
SMO304G0051 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 2.2e-118 430.6 572 41.6
SMO304G0004 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 8.5e-115 418.7 644 39.0
PGSC0003DMG400013813 Solanum tuberosum HOM05D005079 ORTHO05D006362 1.3e-110 404.8 295 62.7
SMO304G0113 Selaginella moellendorffii HOM05D013654 ORTHO05D006362 1.0e-107 395.2 530 41.3
HPP92_028199 Vanilla planifolia HOM05D005079 ORTHO05D006362 8.5e-107 392.1 351 53.6
SMO014G0007 Selaginella moellendorffii HOM05D005079 ORTHO05D006362 8.2e-94 349.0 687 34.6
CBR_g41210 Chara braunii HOM05D005079 ORTHO05D006362 1.6e-89 334.7 686 33.2
Hma1.2p1_1786F.1_g302380 Hydrangea macrophylla HOM05D005079 ORTHO05D006362 3.4e-79 300.4 191 71.7
CDE04G1017 Ceratophyllum demersum HOM05D005079 ORTHO05D006362 3.3e-74 283.9 428 36.9
Mapoly0021s0158 Marchantia polymorpha HOM05D005079 ORTHO05D006362 6.6e-67 259.6 259 45.6
MBI09_g47605_MAGBIO Magnolia biondii HOM05D005079 ORTHO05D006362 5.6e-66 256.5 159 72.3
Glyma.17G141300 Glycine max HOM05D005079 ORTHO05D006362 8.9e-64 249.2 148 70.9
Migut.N00545 Erythranthe guttata HOM05D005079 ORTHO05D006362 4.1e-61 240.4 197 55.8
SEGI_13987 Sequoiadendron giganteum HOM05D005079 ORTHO05D006362 6.2e-57 226.5 216 47.7
Mapoly0021s0157 Marchantia polymorpha HOM05D005079 ORTHO05D006362 7.8e-52 209.5 339 37.8
RcHm_v2.0_Chr3g0497351 Rosa chinensis HOM05D005079 ORTHO05D006362 1.8e-32 145.2 96 69.8
Lj4g0004414 Lotus japonicus HOM05D005079 ORTHO05D006362 1.9e-26 125.2 111 59.5
Dinv39142 Davidia involucrata HOM05D005079 ORTHO05D006362 2.8e-25 121.3 80 73.8
AL7G38250 Arabidopsis lyrata HOM05D005079 ORTHO05D006362 1.8e-24 118.6 177 43.5
C01p11340 Brassica napus HOM05D005079 ORTHO05D006362 3.1e-24 117.9 88 69.3
BolC1t01102H Brassica oleracea HOM05D005079 ORTHO05D006362 3.1e-24 117.9 88 69.3
SEGI_21709 Sequoiadendron giganteum HOM05D005079 ORTHO05D006362 6.0e-20 103.6 77 58.4
CDE04G3241 Ceratophyllum demersum HOM05D005079 ORTHO05D006362 1.3e-19 102.4 178 39.9
HPP92_008920 Vanilla planifolia HOM05D005079 ORTHO05D006362 1.5e-18 99.0 112 50.0
BolC1t01100H Brassica oleracea HOM05D005079 ORTHO05D006362 6.2e-17 93.6 83 57.8
SHI11315 Sapria himalayana HOM05D005079 ORTHO05D006362 6.2e-17 93.6 101 51.5
AL7G38220 Arabidopsis lyrata HOM05D005079 ORTHO05D006362 2.4e-16 91.7 75 64.0
CDE04G0837 Ceratophyllum demersum HOM05D005079 ORTHO05D006362 2.6e-15 88.2 86 53.5
HPP92_028200 Vanilla planifolia HOM05D005079 ORTHO05D006362 3.5e-12 77.8 80 50.0
PRCOL_00004414 Prasinoderma coloniale HOM05D005079 ORTHO05D034446 2.5e-10 71.6 170 31.2
PRCOL_00002472 Prasinoderma coloniale HOM05D005079 ORTHO05D006362 9.7e-10 69.7 276 25.4
MCO05G104 Micromonas commoda HOM05D005079 ORTHO05D006362 4.8e-09 67.4 239 27.6
MCO11G565 Micromonas commoda HOM05D005079 ORTHO05D034446 4.8e-09 67.4 167 24.6
CBR_g41214 Chara braunii HOM05D005079 ORTHO05D006362 1.1e-08 66.2 61 45.9
MBI17_g38828_MAGBIO Magnolia biondii HOM05D005079 ORTHO05D000022 1.4e-08 65.9 39 64.1
Cre02.g141626 Chlamydomonas reinhardtii HOM05D005079 ORTHO05D006362 5.3e-08 63.9 72 41.7
Lsat_1_v5_gn_4_132320 Lactuca sativa HOM05D005079 ORTHO05D006362 1.5e-07 62.4 59 55.9
MCO07G501 Micromonas commoda HOM05D005079 ORTHO05D006362 1.7e-06 58.9 217 25.3


User provided reference genes

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