Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012654 Carpinus fangiana HOM05D000595 ORTHO05D004141 1.3e-260 902.5 442 100.0
Haze_07994 Corylus avellana HOM05D000595 ORTHO05D004141 1.2e-80 304.7 487 46.2
Cfa012657 Carpinus fangiana HOM05D000595 ORTHO05D004141 3.0e-60 236.9 136 89.0
CiPaw.11G104000 Carya illinoinensis HOM05D000595 ORTHO05D004141 9.7e-51 205.3 218 55.5
QL02p060306 Quercus lobata HOM05D000595 ORTHO05D004141 2.8e-50 203.8 136 76.5
QL02p060347 Quercus lobata HOM05D000595 ORTHO05D004141 5.3e-49 199.5 136 75.7
arahy.Tifrunner.gnm1.ann1.BJDV4A Arachis hypogaea HOM05D000595 ORTHO05D004141 1.4e-46 191.4 218 53.2
arahy.Tifrunner.gnm1.ann1.NQH3GN Arachis hypogaea HOM05D000595 ORTHO05D004141 1.4e-46 191.4 218 53.2
Manes.15G187301 Manihot esculenta HOM05D000595 ORTHO05D004141 3.2e-46 190.3 136 70.6
CSS0032199 Camellia sinensis var. sinensis HOM05D000595 ORTHO05D004141 7.2e-46 189.1 136 70.6
MD00G1148100 Malus domestica HOM05D000595 ORTHO05D004141 3.6e-45 186.8 216 50.0
Glyma.04G123900 Glycine max HOM05D000595 ORTHO05D004141 7.9e-45 185.7 136 69.9
Phvul.002G127000 Phaseolus vulgaris HOM05D000595 ORTHO05D004141 7.9e-45 185.7 134 70.9
Lalb_Chr16g0380651 Lupinus albus HOM05D000595 ORTHO05D004141 1.4e-44 184.9 136 69.9
Dinv37419 Davidia involucrata HOM05D000595 ORTHO05D004141 2.3e-44 184.1 136 69.9
Prupe.5G018900 Prunus persica HOM05D000595 ORTHO05D004141 5.1e-44 183.0 136 69.1
TPR.G17247 Trifolium pratense HOM05D000595 ORTHO05D004141 1.1e-43 181.8 137 69.3
VMungo1215G0102 Vigna mungo HOM05D000595 ORTHO05D004141 1.1e-43 181.8 139 68.3
FAN13G2264 Fragaria x ananassa HOM05D000595 ORTHO05D004141 1.5e-43 181.4 136 68.4
TWI60G0525 Tripterygium wilfordii HOM05D000595 ORTHO05D004141 1.5e-43 181.4 134 67.9
Lalb_Chr09g0325191 Lupinus albus HOM05D000595 ORTHO05D004141 2.6e-43 180.6 221 50.2
TAR629G2634 Trochodendron aralioides HOM05D000595 ORTHO05D004141 3.3e-43 180.3 136 69.1
GSVIVG01022815001 Vitis vinifera HOM05D000595 ORTHO05D004141 4.4e-43 179.9 136 70.6
Medtr5g026610 Medicago truncatula HOM05D000595 ORTHO05D004141 7.4e-43 179.1 138 67.4
Duzib116G0855 Durio zibethinus HOM05D000595 ORTHO05D004141 9.7e-43 178.7 136 66.9
Ca_25085_v3 Cicer arietinum L. HOM05D000595 ORTHO05D004141 1.7e-42 177.9 137 68.6
TPR.G39643 Trifolium pratense HOM05D000595 ORTHO05D004141 1.7e-42 177.9 138 67.4
GSVIVG01036947001 Vitis vinifera HOM05D000595 ORTHO05D004141 1.7e-42 177.9 120 76.7
Potri.001G129600 Populus trichocarpa HOM05D000595 ORTHO05D004141 2.8e-42 177.2 135 67.4
Sc07g0008260 Simmondsia chinensis HOM05D000595 ORTHO05D004141 3.7e-42 176.8 136 66.2
Duzib116G0431 Durio zibethinus HOM05D000595 ORTHO05D004141 6.3e-42 176.0 136 65.4
Thecc.03G325300 Theobroma cacao HOM05D000595 ORTHO05D004141 6.3e-42 176.0 120 72.5
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 8.2e-42 175.6 139 62.6
Aqoxy3G02180 Aquilegia oxysepala HOM05D000595 ORTHO05D004141 1.1e-41 175.3 139 64.7
CANSAT21G1418 Cannabis sativa HOM05D000595 ORTHO05D004141 1.1e-41 175.3 136 63.2
AUR62027310 Chenopodium quinoa HOM05D000595 ORTHO05D004141 1.1e-41 175.3 136 64.7
Peaxi162Scf00053g00618 Petunia axillaris HOM05D000595 ORTHO05D004141 1.1e-41 175.3 136 64.7
AUR62007422 Chenopodium quinoa HOM05D000595 ORTHO05D004141 1.4e-41 174.9 136 64.0
Actinidia32782 Actinidia chinensis HOM05D000595 ORTHO05D004141 1.8e-41 174.5 136 66.2
Phvul.002G126900 Phaseolus vulgaris HOM05D000595 ORTHO05D004141 2.4e-41 174.1 136 67.6
Psat2g142920 Pisum sativum HOM05D000595 ORTHO05D004141 3.1e-41 173.7 137 65.7
Solyc08g075530.3 Solanum lycopersicum HOM05D000595 ORTHO05D004141 3.1e-41 173.7 136 64.0
Sopen08g024190 Solanum pennellii HOM05D000595 ORTHO05D004141 3.1e-41 173.7 136 64.0
Nitab4.5_0000985g0070 Nicotiana tabacum HOM05D000595 ORTHO05D004141 4.1e-41 173.3 136 64.0
RcHm_v2.0_Chr7g0213911 Rosa chinensis HOM05D000595 ORTHO05D004141 4.1e-41 173.3 136 64.0
DCAR_004519 Daucus carota HOM05D000595 ORTHO05D004141 5.3e-41 172.9 136 65.4
Gohir.A02G091200 Gossypium hirsutum HOM05D000595 ORTHO05D004141 5.3e-41 172.9 136 65.4
PSO782G2105 Papaver somniferum HOM05D000595 ORTHO05D004141 5.3e-41 172.9 139 61.2
Sabra01G0099900 Salix brachista HOM05D000595 ORTHO05D004141 5.3e-41 172.9 141 64.5
ClCG10G000900 Citrullus lanatus HOM05D000595 ORTHO05D004141 7.0e-41 172.6 139 64.7
FvH4_5g24150 Fragaria vesca HOM05D000595 ORTHO05D004141 7.0e-41 172.6 134 65.7
CAN.G1731.4 Capsicum annuum HOM05D000595 ORTHO05D004141 9.1e-41 172.2 136 62.5
Psat2g142760 Pisum sativum HOM05D000595 ORTHO05D004141 9.1e-41 172.2 138 66.7
Lj8A330G11 Lonicera japonica HOM05D000595 ORTHO05D004141 1.2e-40 171.8 136 64.0
Nitab4.5_0000030g0360 Nicotiana tabacum HOM05D000595 ORTHO05D004141 1.2e-40 171.8 136 63.2
Gohir.D02G109400 Gossypium hirsutum HOM05D000595 ORTHO05D004141 1.5e-40 171.4 136 66.2
Rhsim11G0034700 Rhododendron simsii HOM05D000595 ORTHO05D004141 1.5e-40 171.4 136 61.8
HanXRQChr17g0537211 Helianthus annuus HOM05D000595 ORTHO05D004141 2.6e-40 170.6 136 63.2
PSO384G3949 Papaver somniferum HOM05D000595 ORTHO05D004141 2.6e-40 170.6 139 62.6
RcHm_v2.0_Chr7g0213851 Rosa chinensis HOM05D000595 ORTHO05D004141 4.5e-40 169.9 136 63.2
Gorai.005G124100 Gossypium raimondii HOM05D000595 ORTHO05D004141 5.9e-40 169.5 136 65.4
Sp3g21340 Schrenkiella parvula HOM05D000595 ORTHO05D004141 5.9e-40 169.5 136 58.1
Atru.chr6.1509 Acer truncatum HOM05D000595 ORTHO05D004141 7.7e-40 169.1 136 63.2
EL10Ac5g11905 Beta vulgaris HOM05D000595 ORTHO05D004141 1.0e-39 168.7 120 65.0
Lj8A331G39 Lonicera japonica HOM05D000595 ORTHO05D004141 1.3e-39 168.3 140 60.7
PGR042G2013 Punica granatum HOM05D000595 ORTHO05D004141 1.3e-39 168.3 139 61.2
Nn1g02038 Nelumbo nucifera HOM05D000595 ORTHO05D004141 1.7e-39 167.9 139 62.6
PSO384G3519 Papaver somniferum HOM05D000595 ORTHO05D004141 2.9e-39 167.2 254 43.3
Lj2g0003822 Lotus japonicus HOM05D000595 ORTHO05D004141 5.0e-39 166.4 142 61.3
vmacro00079 Vaccinium macrocarpon HOM05D000595 ORTHO05D004141 6.5e-39 166.0 148 58.8
Lsat_1_v5_gn_3_23561 Lactuca sativa HOM05D000595 ORTHO05D004141 8.5e-39 165.6 136 61.0
CsaV3_3G000980 Cucumis sativus L. HOM05D000595 ORTHO05D004141 1.1e-38 165.2 139 61.2
Manes.17G004600 Manihot esculenta HOM05D000595 ORTHO05D004141 1.1e-38 165.2 228 45.6
AL3G38380 Arabidopsis lyrata HOM05D000595 ORTHO05D004141 1.9e-38 164.5 140 55.7
COL.COLO4_24689 Corchorus olitorius HOM05D000595 ORTHO05D004141 1.9e-38 164.5 139 60.4
Eucgr.E01209 Eucalyptus grandis HOM05D000595 ORTHO05D004141 5.5e-38 162.9 136 58.1
ECA246G1180 Erigeron canadensis HOM05D000595 ORTHO05D004141 9.4e-38 162.2 136 58.8
Eucgr.E01212 Eucalyptus grandis HOM05D000595 ORTHO05D004141 9.4e-38 162.2 136 58.1
MBI04_g21145_MAGBIO Magnolia biondii HOM05D000595 ORTHO05D004141 9.4e-38 162.2 139 63.3
DCAR_004520 Daucus carota HOM05D000595 ORTHO05D004141 1.2e-37 161.8 135 61.5
Hund14328 Selenicereus undatus HOM05D000595 ORTHO05D004141 1.2e-37 161.8 136 57.4
A01p31410 Brassica napus HOM05D000595 ORTHO05D004141 1.6e-37 161.4 136 55.9
C01p40000 Brassica napus HOM05D000595 ORTHO05D004141 1.6e-37 161.4 136 55.9
BraA01t03266Z Brassica rapa HOM05D000595 ORTHO05D004141 1.6e-37 161.4 136 55.9
Thhalv10019990m.g Eutrema salsugineum HOM05D000595 ORTHO05D004141 1.6e-37 161.4 136 56.6
Sp3g21350 Schrenkiella parvula HOM05D000595 ORTHO05D004141 1.6e-37 161.4 140 54.3
MELO3C013786.2 Cucumis melo HOM05D000595 ORTHO05D004141 2.7e-37 160.6 139 59.7
MSTRG.24716 Avicennia marina HOM05D000595 ORTHO05D004141 3.6e-37 160.2 143 58.7
BolC1t03957H Brassica oleracea HOM05D000595 ORTHO05D004141 3.6e-37 160.2 136 56.6
Ciclev10000152m.g Citrus clementina HOM05D000595 ORTHO05D004141 3.6e-37 160.2 136 61.0
THA.LOC104822230 Tarenaya hassleriana HOM05D000595 ORTHO05D004141 3.6e-37 160.2 220 42.3
Carub.0003s2390 Capsella rubella HOM05D000595 ORTHO05D004141 4.7e-37 159.8 140 54.3
ECA246G0927 Erigeron canadensis HOM05D000595 ORTHO05D004141 6.1e-37 159.5 136 59.6
Sed0017541 Sechium edule HOM05D000595 ORTHO05D004141 8.0e-37 159.1 139 59.7
Carub.0003s2391 Capsella rubella HOM05D000595 ORTHO05D004141 1.8e-36 157.9 140 53.6
Ciclev10011016m.g Citrus clementina HOM05D000595 ORTHO05D004141 1.8e-36 157.9 136 61.0
Zm00001eb096920 Zea mays HOM05D000595 ORTHO05D004141 5.2e-36 156.4 139 56.1
A01p31400 Brassica napus HOM05D000595 ORTHO05D004141 6.7e-36 156.0 140 52.9
C01p39990 Brassica napus HOM05D000595 ORTHO05D004141 6.7e-36 156.0 140 54.3
Ciclev10000404m.g Citrus clementina HOM05D000595 ORTHO05D004141 6.7e-36 156.0 136 61.0
SalBow4G2071 Salvia bowleyana HOM05D000595 ORTHO05D004141 6.7e-36 156.0 142 59.2
TPR.G17274 Trifolium pratense HOM05D000595 ORTHO05D004141 8.8e-36 155.6 136 62.5
AT3G23640 Arabidopsis thaliana HOM05D000595 ORTHO05D004141 1.1e-35 155.2 140 53.6
CDE01G0028 Ceratophyllum demersum HOM05D000595 ORTHO05D004141 1.1e-35 155.2 136 56.6
Migut.E01361 Erythranthe guttata HOM05D000595 ORTHO05D004141 2.0e-35 154.5 136 58.8
HPP92_020874 Vanilla planifolia HOM05D000595 ORTHO05D004141 1.7e-34 151.4 219 41.1
Os07g0420700 Oryza sativa ssp. japonica HOM05D000595 ORTHO05D004141 3.7e-34 150.2 150 53.3
SGA_v2.0_scaffold111G31354 Striga asiatica HOM05D000595 ORTHO05D004141 1.4e-33 148.3 123 61.0
Zm00001eb305980 Zea mays HOM05D000595 ORTHO05D004141 2.4e-33 147.5 139 54.0
Cpa.g.sc71.54 Carica papaya HOM05D000595 ORTHO05D004141 9.1e-33 145.6 104 68.3
Aa31LG10G5270 Aethionema arabicum HOM05D000595 ORTHO05D004141 2.0e-32 144.4 140 49.3
Os07g0421300 Oryza sativa ssp. japonica HOM05D000595 ORTHO05D004141 4.5e-32 143.3 136 52.9
ATR0829G165 Amborella trichopoda HOM05D000595 ORTHO05D004141 7.7e-32 142.5 134 53.0
Migut.A00539 Erythranthe guttata HOM05D000595 ORTHO05D004141 8.5e-31 139.0 136 52.9
CSS0050335 Camellia sinensis var. sinensis HOM05D000595 ORTHO05D004141 7.2e-30 136.0 114 63.2
Cc08_g05420 Coffea canephora HOM05D000595 ORTHO05D004141 1.7e-26 124.8 97 64.9
CSS0006745 Camellia sinensis var. sinensis HOM05D000595 ORTHO05D004141 1.1e-25 122.1 114 57.0
Oeu042200.2 Olea europaea HOM05D000595 ORTHO05D004141 4.1e-25 120.2 136 49.3
BcaB04g20431 Brassica carinata HOM05D000595 ORTHO05D004141 5.9e-24 116.3 86 64.0
GSVIVG01013642001 Vitis vinifera HOM05D000595 ORTHO05D004141 5.9e-24 116.3 107 59.8
Oeu042206.1 Olea europaea HOM05D000595 ORTHO05D004141 6.5e-23 112.8 98 55.1
Ca_25052_v3 Cicer arietinum L. HOM05D002908 ORTHO05D009379 2.5e-22 110.9 82 69.5
BcaB04g20429 Brassica carinata HOM05D000595 ORTHO05D004141 9.4e-22 109.0 140 41.4
Oeu042195.1 Olea europaea HOM05D000595 ORTHO05D004141 9.4e-22 109.0 136 47.8
Oeu042228.5 Olea europaea HOM05D000595 ORTHO05D004141 1.6e-21 108.2 94 58.5
SGA_v2.0_scaffold89G27418 Striga asiatica HOM05D000595 ORTHO05D004141 2.0e-19 101.3 100 50.0
Oeu042205.1 Olea europaea HOM05D000595 ORTHO05D004141 3.7e-18 97.1 79 57.0
Pp3c16_2470 Physcomitrium patens HOM05D000595 ORTHO05D004141 2.3e-15 87.8 125 42.4
Pp3c3_9200 Physcomitrium patens HOM05D000595 ORTHO05D004141 1.9e-14 84.7 118 40.7
Oeu042203.1 Olea europaea HOM05D000595 ORTHO05D004141 2.5e-14 84.3 82 52.4
Pp3c5_4460 Physcomitrium patens HOM05D000595 ORTHO05D004141 4.7e-13 80.1 112 39.3
Pp3c13_11140 Physcomitrium patens HOM05D000595 ORTHO05D004141 8.0e-13 79.3 122 36.1
Pp3c4_24030 Physcomitrium patens HOM05D000595 ORTHO05D004141 1.0e-12 79.0 131 34.4
SMO116G0166 Selaginella moellendorffii HOM05D000595 ORTHO05D004141 4.0e-12 77.0 129 34.9
AagrBONN_evm.TU.Sc2ySwM_344.2687 Anthoceros agrestis HOM05D000595 ORTHO05D004141 6.8e-12 76.3 132 34.1
Mapoly0633s0002 Marchantia polymorpha HOM05D000595 ORTHO05D004141 8.9e-12 75.9 133 35.3
Mapoly0135s0001 Marchantia polymorpha HOM05D000595 ORTHO05D004141 2.0e-11 74.7 133 34.6
AagrBONN_evm.TU.Sc2ySwM_228.2586 Anthoceros agrestis HOM05D000595 ORTHO05D004141 3.2e-09 67.4 98 36.7
vmacro13036 Vaccinium macrocarpon HOM05D000595 ORTHO05D426933 3.3e-06 57.4 56 51.8


User provided reference genes

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