Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012647 Carpinus fangiana HOM05D005197 ORTHO05D006263 8.9e-141 503.8 299 100.0
Haze_08011 Corylus avellana HOM05D005197 ORTHO05D006263 7.3e-135 484.2 299 95.7
CiPaw.10G109500 Carya illinoinensis HOM05D005197 ORTHO05D006263 6.7e-88 328.2 311 71.7
MD16G1288300 Malus domestica HOM05D005197 ORTHO05D006263 5.9e-60 235.3 301 63.1
TWI32G0688 Tripterygium wilfordii HOM05D005197 ORTHO05D006263 1.1e-58 231.1 314 51.3
ClCG07G011270 Citrullus lanatus HOM05D005197 ORTHO05D006263 4.2e-58 229.2 298 51.0
CsaV3_4G006970 Cucumis sativus L. HOM05D005197 ORTHO05D006263 2.7e-57 226.5 299 50.2
MELO3C016247.2 Cucumis melo HOM05D005197 ORTHO05D006263 3.6e-57 226.1 299 50.2
Prupe.5G017000 Prunus persica HOM05D005197 ORTHO05D006263 5.7e-55 218.8 302 51.0
Atru.chr6.2120 Acer truncatum HOM05D005197 ORTHO05D006263 2.8e-54 216.5 305 48.2
Manes.17G005300 Manihot esculenta HOM05D005197 ORTHO05D006263 7.7e-52 208.4 299 48.8
Potri.001G128600 Populus trichocarpa HOM05D005197 ORTHO05D006263 1.0e-51 208.0 335 53.4
TWI60G1368 Tripterygium wilfordii HOM05D005197 ORTHO05D006263 8.6e-51 204.9 323 46.1
RcHm_v2.0_Chr7g0214771 Rosa chinensis HOM05D005197 ORTHO05D006263 5.5e-50 202.2 313 47.6
PGR042G3936 Punica granatum HOM05D005197 ORTHO05D006263 8.0e-49 198.4 316 50.9
CANSAT01G1003 Cannabis sativa HOM05D005197 ORTHO05D006263 1.8e-48 197.2 301 47.5
TAR629G2553 Trochodendron aralioides HOM05D005197 ORTHO05D006263 8.9e-48 194.9 313 43.5
vmacro19764 Vaccinium macrocarpon HOM05D005197 ORTHO05D006263 1.5e-47 194.1 312 53.8
arahy.Tifrunner.gnm1.ann1.11I9TD Arachis hypogaea HOM05D005197 ORTHO05D006263 2.6e-47 193.4 301 48.5
arahy.Tifrunner.gnm1.ann1.CK7EWS Arachis hypogaea HOM05D005197 ORTHO05D006263 2.6e-47 193.4 301 48.5
Ciclev10002053m.g Citrus clementina HOM05D005197 ORTHO05D006263 1.3e-46 191.0 306 46.7
Cc00_g01150 Coffea canephora HOM05D005197 ORTHO05D006263 1.7e-46 190.7 299 46.2
FAN04G2949 Fragaria x ananassa HOM05D005197 ORTHO05D006263 2.8e-46 189.9 305 46.2
Cpa.g.sc305.1 Carica papaya HOM05D005197 ORTHO05D006263 4.9e-46 189.1 302 45.4
QL12p002187 Quercus lobata HOM05D005197 ORTHO05D006263 6.3e-46 188.7 308 50.3
Oeu057151.1 Olea europaea HOM05D005197 ORTHO05D006263 1.1e-45 188.0 317 45.1
FAN08G2611 Fragaria x ananassa HOM05D005197 ORTHO05D006263 1.4e-45 187.6 309 49.8
CAN.G22.3 Capsicum annuum HOM05D005197 ORTHO05D006263 4.1e-45 186.0 308 42.5
Sopen07g029250 Solanum pennellii HOM05D005197 ORTHO05D006263 4.5e-44 182.6 299 44.1
Thecc.03G323400 Theobroma cacao HOM05D005197 ORTHO05D006263 5.9e-44 182.2 297 45.5
Phvul.002G124900 Phaseolus vulgaris HOM05D005197 ORTHO05D006263 1.0e-43 181.4 303 45.2
Sed0006364 Sechium edule HOM05D005197 ORTHO05D006263 1.3e-43 181.0 333 40.2
FAN13G2818 Fragaria x ananassa HOM05D005197 ORTHO05D006263 1.7e-43 180.6 308 45.8
Actinidia25714 Actinidia chinensis HOM05D005197 ORTHO05D006263 1.1e-42 177.9 307 52.4
Sabra01G0098900 Salix brachista HOM05D005197 ORTHO05D006263 9.5e-42 174.9 333 45.9
Rhsim05G0122600 Rhododendron simsii HOM05D005197 ORTHO05D006263 1.2e-41 174.5 300 42.3
Peaxi162Scf00445g00001 Petunia axillaris HOM05D005197 ORTHO05D006263 8.0e-41 171.8 300 41.7
Nitab4.5_0004181g0010 Nicotiana tabacum HOM05D005197 ORTHO05D006263 4.0e-40 169.5 316 41.8
Eucgr.E01174 Eucalyptus grandis HOM05D005197 ORTHO05D006263 5.2e-40 169.1 302 41.7
Ah.12g056120 Amaranthus hybridus HOM05D005197 ORTHO05D006263 6.8e-40 168.7 300 41.0
MSTRG.13922 Avicennia marina HOM05D005197 ORTHO05D006263 6.8e-40 168.7 301 42.9
FvH4_5g24380 Fragaria vesca HOM05D005197 ORTHO05D006263 6.8e-40 168.7 301 44.9
SalBow8G0134 Salvia bowleyana HOM05D005197 ORTHO05D006263 8.9e-40 168.3 299 43.1
Duzib084G1118 Durio zibethinus HOM05D005197 ORTHO05D006263 4.4e-39 166.0 298 41.6
FAN18G1897 Fragaria x ananassa HOM05D005197 ORTHO05D006263 4.4e-39 166.0 299 44.8
Lalb_Chr16g0380581 Lupinus albus HOM05D005197 ORTHO05D006263 4.4e-39 166.0 297 41.1
PGSC0003DMG400041236 Solanum tuberosum HOM05D005197 ORTHO05D006263 9.8e-39 164.9 278 44.6
Lj2g0023539 Lotus japonicus HOM05D005197 ORTHO05D006263 2.2e-38 163.7 301 42.5
VMungo1215G2329 Vigna mungo HOM05D005197 ORTHO05D006263 4.9e-38 162.5 298 44.0
Nitab4.5_0000183g0040 Nicotiana tabacum HOM05D005197 ORTHO05D006263 2.0e-36 157.1 319 39.8
Nn1g09229 Nelumbo nucifera HOM05D005197 ORTHO05D006263 4.6e-36 156.0 314 39.5
TPR.G17269 Trifolium pratense HOM05D005197 ORTHO05D006263 3.0e-35 153.3 300 40.0
Nn3g19195 Nelumbo nucifera HOM05D005197 ORTHO05D006263 5.0e-35 152.5 301 39.9
SGA_v2.0_scaffold121G33048 Striga asiatica HOM05D005197 ORTHO05D006263 6.6e-35 152.1 298 42.6
Psat2g143520 Pisum sativum HOM05D005197 ORTHO05D006263 4.3e-34 149.4 300 39.7
Lj8A379T44 Lonicera japonica HOM05D005197 ORTHO05D006263 9.5e-34 148.3 306 45.8
Medtr5g026390 Medicago truncatula HOM05D005197 ORTHO05D006263 9.5e-34 148.3 305 38.4
DCAR_030955 Daucus carota HOM05D005197 ORTHO05D006263 2.1e-33 147.1 299 39.1
COL.COLO4_16714 Corchorus olitorius HOM05D005197 ORTHO05D006263 1.8e-32 144.1 299 39.1
SalBow8G0427 Salvia bowleyana HOM05D005197 ORTHO05D006263 5.2e-32 142.5 298 40.3
Migut.E01390 Erythranthe guttata HOM05D005197 ORTHO05D006263 3.4e-31 139.8 307 40.1
Thhalv10008233m.g Eutrema salsugineum HOM05D005197 ORTHO05D006263 9.8e-31 138.3 334 40.7
Ca_25075_v3 Cicer arietinum L. HOM05D005197 ORTHO05D006263 2.2e-30 137.1 332 36.4
BcaB07g32805 Brassica carinata HOM05D005197 ORTHO05D006263 1.4e-29 134.4 303 40.9
Glyma.01G150900 Glycine max HOM05D005197 ORTHO05D006263 4.1e-29 132.9 300 42.7
C05p30720 Brassica napus HOM05D000153 ORTHO05D002648 2.1e-28 130.6 318 37.1
CARHR030980 Cardamine hirsuta HOM05D005197 ORTHO05D006263 2.1e-28 130.6 325 41.5
Sc22g0002200 Simmondsia chinensis HOM05D005197 ORTHO05D006263 3.5e-28 129.8 299 47.2
A09p34750 Brassica napus HOM05D000153 ORTHO05D002648 7.8e-28 128.6 292 41.8
BcaC05g27174 Brassica carinata HOM05D005197 ORTHO05D006263 1.0e-27 128.3 322 37.0
BolC5t31804H Brassica oleracea HOM05D000153 ORTHO05D002648 1.0e-27 128.3 322 37.0
AT1G31460 Arabidopsis thaliana HOM05D005197 ORTHO05D006263 1.3e-27 127.9 312 37.5
Carub.0001s2988 Capsella rubella HOM05D005197 ORTHO05D006263 1.3e-27 127.9 325 41.8
Aa31LG2G14490 Aethionema arabicum HOM05D005197 ORTHO05D006263 2.3e-27 127.1 314 38.5
Lsat_1_v5_gn_6_15401 Lactuca sativa HOM05D005197 ORTHO05D006263 3.0e-27 126.7 305 44.9
ECA233G2979 Erigeron canadensis HOM05D005197 ORTHO05D006263 8.6e-27 125.2 297 35.7
PSO782G4627 Papaver somniferum HOM05D005197 ORTHO05D006263 1.9e-26 124.0 317 36.9
EL10Ac5g11882 Beta vulgaris HOM05D005197 ORTHO05D006263 3.3e-26 123.2 300 35.7
Sp1g27260 Schrenkiella parvula HOM05D005197 ORTHO05D006263 9.5e-26 121.7 308 36.7
ECA232G2780 Erigeron canadensis HOM05D005197 ORTHO05D006263 1.2e-25 121.3 305 37.4
AL1G49590 Arabidopsis lyrata HOM05D005197 ORTHO05D006263 2.8e-25 120.2 315 40.3
BraA09t39008Z Brassica rapa HOM05D000153 ORTHO05D002648 1.5e-23 114.4 297 36.7
Dinv09432 Davidia involucrata HOM05D005197 ORTHO05D002665 8.3e-22 108.6 158 46.2
THA.LOC104814380 Tarenaya hassleriana HOM05D005197 ORTHO05D006263 3.2e-21 106.7 340 34.4
TAR636G3359 Trochodendron aralioides HOM05D005197 ORTHO05D006263 7.1e-21 105.5 101 56.4
ATR0369G001 Amborella trichopoda HOM05D005197 ORTHO05D006263 9.2e-21 105.1 312 36.2
AUR62027297 Chenopodium quinoa HOM05D005197 ORTHO05D006263 2.5e-18 97.1 269 35.3
unitig_748.g8157 Utricularia gibba HOM05D000246 ORTHO05D007958 2.5e-18 97.1 296 34.1
HanXRQChr17g0539691 Helianthus annuus HOM05D005197 ORTHO05D006263 3.3e-18 96.7 378 37.0
Glyma.09G215900 Glycine max HOM05D005197 ORTHO05D006263 7.3e-18 95.5 98 60.2
Solyc07g055880.1 Solanum lycopersicum HOM05D005197 ORTHO05D006263 4.7e-17 92.8 64 75.0
AUR62022385 Chenopodium quinoa HOM05D005197 ORTHO05D006263 6.2e-17 92.4 253 33.6
Aa31LG9G15880 Aethionema arabicum HOM05D005197 ORTHO05D006263 2.4e-16 90.5 286 34.3
Nn3g19194 Nelumbo nucifera HOM05D005197 ORTHO05D006263 2.4e-16 90.5 103 49.5
TPR.G23178 Trifolium pratense HOM05D005197 ORTHO05D006263 6.8e-16 89.0 219 37.0
QL12p002196 Quercus lobata HOM05D005197 ORTHO05D006263 1.5e-15 87.8 99 52.5
PSO063G5355 Papaver somniferum HOM05D005197 ORTHO05D006263 7.6e-15 85.5 308 32.8
Glyma.01G151000 Glycine max HOM05D005197 ORTHO05D006263 4.9e-14 82.8 100 47.0
Glyma.09G216000 Glycine max HOM05D005197 ORTHO05D006263 4.9e-14 82.8 90 52.2
Haze_08012 Corylus avellana HOM05D005197 ORTHO05D006263 3.2e-13 80.1 103 48.5
MBI04_g30782_MAGBIO Magnolia biondii HOM05D005197 ORTHO05D006263 4.2e-13 79.7 70 60.0
Psat2g143800 Pisum sativum HOM05D005197 ORTHO05D006263 4.2e-13 79.7 89 52.8
Haze_08014 Corylus avellana HOM05D005197 ORTHO05D006263 7.1e-13 79.0 103 47.6
Cfa012646 Carpinus fangiana HOM05D005197 ORTHO05D006263 2.1e-12 77.4 96 49.0
CiPaw.11G075300 Carya illinoinensis HOM05D005197 ORTHO05D006263 2.1e-12 77.4 98 48.0
Actinidia25715 Actinidia chinensis HOM05D005197 ORTHO05D006263 2.7e-12 77.0 67 58.2
Aqoxy3G01755 Aquilegia oxysepala HOM05D005197 ORTHO05D006263 2.7e-12 77.0 303 32.0
VMungo1215G1205 Vigna mungo HOM05D005197 ORTHO05D006263 3.5e-12 76.6 87 44.8
BcaB07g32316 Brassica carinata HOM05D005197 ORTHO05D006263 4.6e-12 76.3 63 61.9
Thhalv10009724m.g Eutrema salsugineum HOM05D005197 ORTHO05D006263 6.0e-12 75.9 265 34.3
Lalb_Chr05g0215321 Lupinus albus HOM05D005197 ORTHO05D006263 7.8e-12 75.5 85 50.6
Phvul.002G124800 Phaseolus vulgaris HOM05D005197 ORTHO05D006263 1.3e-11 74.7 86 46.5
HPP92_022730 Vanilla planifolia HOM05D005197 ORTHO05D006263 2.3e-11 73.9 295 29.2
CARHR023710 Cardamine hirsuta HOM05D005197 ORTHO05D006263 3.0e-11 73.6 56 60.7
BcaC05g26236 Brassica carinata HOM05D005197 ORTHO05D006263 1.9e-10 70.9 63 58.7
BolC5t30946H Brassica oleracea HOM05D005197 ORTHO05D006263 1.9e-10 70.9 63 58.7
Medtr5g026380 Medicago truncatula HOM05D005197 ORTHO05D006263 1.9e-10 70.9 85 48.2
CDE11G1044 Ceratophyllum demersum HOM05D005197 ORTHO05D006263 3.3e-10 70.1 299 31.8
TPR.G36193 Trifolium pratense HOM05D005197 ORTHO05D006263 3.3e-10 70.1 90 48.9
TPR.G17242 Trifolium pratense HOM05D005197 ORTHO05D006263 4.3e-10 69.7 91 48.4
A09p41500 Brassica napus HOM05D005197 ORTHO05D006263 7.3e-10 68.9 63 57.1
C05p22480 Brassica napus HOM05D005197 ORTHO05D006263 7.3e-10 68.9 112 43.8
BraA09t39642Z Brassica rapa HOM05D005197 ORTHO05D006263 7.3e-10 68.9 63 57.1
Carub.0001s2285 Capsella rubella HOM05D005197 ORTHO05D006263 1.6e-09 67.8 56 60.7
AT1G23270 Arabidopsis thaliana HOM05D005197 ORTHO05D006263 2.8e-09 67.0 96 41.7
Lj2g0019897 Lotus japonicus HOM05D005197 ORTHO05D006263 8.1e-09 65.5 79 48.1
TPR.G902 Trifolium pratense HOM05D005197 ORTHO05D006263 1.8e-08 64.3 79 51.9
Hma1.2p1_0317F.1_g123280 Hydrangea macrophylla HOM05D005197 ORTHO05D006263 4.0e-08 63.2 46 69.6
VMungo0464G0602 Vigna mungo HOM05D005197 ORTHO05D006263 6.9e-08 62.4 216 30.6
SEGI_24603 Sequoiadendron giganteum HOM05D005197 ORTHO05D006263 3.4e-07 60.1 297 30.0
arahy.Tifrunner.gnm1.ann1.G7W534 Arachis hypogaea HOM05D005197 ORTHO05D006263 4.4e-07 59.7 91 39.6
arahy.Tifrunner.gnm1.ann1.JB60CZ Arachis hypogaea HOM05D005197 ORTHO05D006263 4.4e-07 59.7 91 39.6
Eucgr.E01175 Eucalyptus grandis HOM05D012124 ORTHO05D006263 4.4e-07 59.7 59 50.8
Carub.0001s2286 Capsella rubella HOM05D005197 ORTHO05D006263 3.8e-06 56.6 160 32.5
Eucgr.L01782 Eucalyptus grandis HOM05D005197 ORTHO05D006263 4.9e-06 56.2 44 68.2
Os06g0710900 Oryza sativa ssp. japonica HOM05D005197 ORTHO05D006263 6.4e-06 55.8 115 39.1
SalBow6G3245 Salvia bowleyana HOM05D005197 ORTHO05D006263 6.4e-06 55.8 69 53.6


User provided reference genes

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