Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012646 Carpinus fangiana HOM05D005197 ORTHO05D006263 3.0e-51 204.9 106 100.0
Haze_08012 Corylus avellana HOM05D005197 ORTHO05D006263 1.9e-45 185.7 106 92.5
Haze_08014 Corylus avellana HOM05D005197 ORTHO05D006263 2.1e-44 182.2 104 91.3
CiPaw.11G075300 Carya illinoinensis HOM05D005197 ORTHO05D006263 3.6e-28 128.3 111 68.5
QL12p002196 Quercus lobata HOM05D005197 ORTHO05D006263 1.3e-25 119.8 106 67.9
Psat2g143800 Pisum sativum HOM05D005197 ORTHO05D006263 1.6e-20 102.8 102 58.8
Medtr5g026380 Medicago truncatula HOM05D005197 ORTHO05D006263 6.2e-20 100.9 103 57.3
TAR636G3359 Trochodendron aralioides HOM05D005197 ORTHO05D006263 1.8e-19 99.4 107 57.0
Glyma.09G216000 Glycine max HOM05D005197 ORTHO05D006263 2.3e-19 99.0 95 61.1
Glyma.01G151000 Glycine max HOM05D005197 ORTHO05D006263 4.0e-19 98.2 100 61.0
Lalb_Chr05g0215321 Lupinus albus HOM05D005197 ORTHO05D006263 6.8e-19 97.4 105 59.0
VMungo1215G1205 Vigna mungo HOM05D005197 ORTHO05D006263 3.4e-18 95.1 87 62.1
TPR.G36193 Trifolium pratense HOM05D005197 ORTHO05D006263 4.4e-18 94.7 107 54.2
TPR.G17242 Trifolium pratense HOM05D005197 ORTHO05D006263 9.8e-18 93.6 104 54.8
Phvul.002G124800 Phaseolus vulgaris HOM05D005197 ORTHO05D006263 4.9e-17 91.3 90 62.2
Lj2g0019897 Lotus japonicus HOM05D005197 ORTHO05D006263 6.4e-17 90.9 93 61.3
ATR0369G001 Amborella trichopoda HOM05D005197 ORTHO05D006263 1.4e-16 89.7 98 51.0
TAR629G2553 Trochodendron aralioides HOM05D005197 ORTHO05D006263 7.1e-16 87.4 101 49.5
Actinidia25715 Actinidia chinensis HOM05D005197 ORTHO05D006263 1.2e-15 86.7 81 61.7
TPR.G902 Trifolium pratense HOM05D005197 ORTHO05D006263 2.7e-15 85.5 93 59.1
MELO3C016247.2 Cucumis melo HOM05D005197 ORTHO05D006263 3.5e-15 85.1 98 50.0
vmacro19764 Vaccinium macrocarpon HOM05D005197 ORTHO05D006263 4.6e-15 84.7 101 51.5
Potri.001G128600 Populus trichocarpa HOM05D005197 ORTHO05D006263 1.3e-14 83.2 102 51.0
CsaV3_4G006970 Cucumis sativus L. HOM05D005197 ORTHO05D006263 1.7e-14 82.8 98 48.0
Nn3g19194 Nelumbo nucifera HOM05D005197 ORTHO05D006263 2.3e-14 82.4 104 48.1
CAN.G22.3 Capsicum annuum HOM05D005197 ORTHO05D006263 1.1e-13 80.1 96 50.0
Rhsim05G0122600 Rhododendron simsii HOM05D005197 ORTHO05D006263 1.5e-13 79.7 102 48.0
Sed0006364 Sechium edule HOM05D005197 ORTHO05D006263 1.5e-13 79.7 96 46.9
TWI60G1368 Tripterygium wilfordii HOM05D005197 ORTHO05D006263 1.9e-13 79.3 101 46.5
Sopen07g029250 Solanum pennellii HOM05D005197 ORTHO05D006263 2.5e-13 79.0 93 49.5
Haze_08011 Corylus avellana HOM05D005197 ORTHO05D006263 3.3e-13 78.6 98 50.0
PGSC0003DMG400041236 Solanum tuberosum HOM05D005197 ORTHO05D006263 3.3e-13 78.6 93 50.5
TWI32G0688 Tripterygium wilfordii HOM05D005197 ORTHO05D006263 3.3e-13 78.6 99 46.5
ClCG07G011270 Citrullus lanatus HOM05D005197 ORTHO05D006263 5.6e-13 77.8 97 45.4
PGR042G3936 Punica granatum HOM05D005197 ORTHO05D006263 5.6e-13 77.8 101 47.5
Nn3g19195 Nelumbo nucifera HOM05D005197 ORTHO05D006263 7.3e-13 77.4 99 47.5
Cfa012647 Carpinus fangiana HOM05D005197 ORTHO05D006263 9.5e-13 77.0 96 49.0
Oeu057151.1 Olea europaea HOM05D005197 ORTHO05D006263 1.2e-12 76.6 92 45.7
Peaxi162Scf00445g00001 Petunia axillaris HOM05D005197 ORTHO05D006263 1.6e-12 76.3 93 48.4
arahy.Tifrunner.gnm1.ann1.11I9TD Arachis hypogaea HOM05D005197 ORTHO05D006263 3.6e-12 75.1 88 50.0
arahy.Tifrunner.gnm1.ann1.CK7EWS Arachis hypogaea HOM05D005197 ORTHO05D006263 3.6e-12 75.1 88 50.0
CiPaw.10G109500 Carya illinoinensis HOM05D005197 ORTHO05D006263 4.7e-12 74.7 98 45.9
Nitab4.5_0004181g0010 Nicotiana tabacum HOM05D005197 ORTHO05D006263 4.7e-12 74.7 90 45.6
Actinidia25714 Actinidia chinensis HOM05D005197 ORTHO05D006263 6.2e-12 74.3 96 47.9
MBI04_g30782_MAGBIO Magnolia biondii HOM05D005197 ORTHO05D006263 6.2e-12 74.3 65 58.5
Nitab4.5_0000183g0040 Nicotiana tabacum HOM05D005197 ORTHO05D006263 8.1e-12 73.9 97 47.4
RcHm_v2.0_Chr7g0214771 Rosa chinensis HOM05D005197 ORTHO05D006263 1.4e-11 73.2 107 46.7
VMungo1215G2329 Vigna mungo HOM05D005197 ORTHO05D006263 1.4e-11 73.2 95 49.5
arahy.Tifrunner.gnm1.ann1.G7W534 Arachis hypogaea HOM05D005197 ORTHO05D006263 4.0e-11 71.6 89 50.6
arahy.Tifrunner.gnm1.ann1.JB60CZ Arachis hypogaea HOM05D005197 ORTHO05D006263 4.0e-11 71.6 89 50.6
Atru.chr6.2120 Acer truncatum HOM05D005197 ORTHO05D006263 5.2e-11 71.2 89 49.4
Phvul.002G124900 Phaseolus vulgaris HOM05D005197 ORTHO05D006263 6.8e-11 70.9 96 47.9
EL10Ac5g11882 Beta vulgaris HOM05D005197 ORTHO05D006263 8.9e-11 70.5 92 42.4
SalBow8G0134 Salvia bowleyana HOM05D005197 ORTHO05D006263 8.9e-11 70.5 94 46.8
SalBow8G0427 Salvia bowleyana HOM05D005197 ORTHO05D006263 8.9e-11 70.5 94 46.8
Ciclev10002053m.g Citrus clementina HOM05D005197 ORTHO05D006263 1.2e-10 70.1 90 48.9
MSTRG.13922 Avicennia marina HOM05D005197 ORTHO05D006263 1.5e-10 69.7 103 44.7
Nn1g09229 Nelumbo nucifera HOM05D005197 ORTHO05D006263 1.5e-10 69.7 103 42.7
Glyma.09G215900 Glycine max HOM05D005197 ORTHO05D006263 2.6e-10 68.9 86 51.2
Manes.17G005300 Manihot esculenta HOM05D005197 ORTHO05D006263 2.6e-10 68.9 91 48.4
Cc00_g01150 Coffea canephora HOM05D005197 ORTHO05D006263 3.4e-10 68.6 92 40.2
Eucgr.E01174 Eucalyptus grandis HOM05D005197 ORTHO05D006263 3.4e-10 68.6 91 47.3
DCAR_030955 Daucus carota HOM05D005197 ORTHO05D006263 5.8e-10 67.8 99 42.4
FAN13G2818 Fragaria x ananassa HOM05D005197 ORTHO05D006263 5.8e-10 67.8 107 43.0
SGA_v2.0_scaffold121G33048 Striga asiatica HOM05D005197 ORTHO05D006263 7.6e-10 67.4 93 46.2
FAN04G2949 Fragaria x ananassa HOM05D005197 ORTHO05D006263 9.9e-10 67.0 107 42.1
FAN08G2611 Fragaria x ananassa HOM05D005197 ORTHO05D006263 2.2e-09 65.9 105 42.9
QL12p002187 Quercus lobata HOM05D005197 ORTHO05D006263 2.2e-09 65.9 91 42.9
Ah.12g056120 Amaranthus hybridus HOM05D005197 ORTHO05D006263 2.9e-09 65.5 90 42.2
Eucgr.E01175 Eucalyptus grandis HOM05D012124 ORTHO05D006263 2.9e-09 65.5 59 61.0
MD16G1288300 Malus domestica HOM05D005197 ORTHO05D006263 2.9e-09 65.5 100 40.0
Solyc07g055880.1 Solanum lycopersicum HOM05D005197 ORTHO05D006263 2.9e-09 65.5 63 52.4
FvH4_5g24380 Fragaria vesca HOM05D005197 ORTHO05D006263 3.8e-09 65.1 96 44.8
FAN18G1897 Fragaria x ananassa HOM05D005197 ORTHO05D006263 3.8e-09 65.1 96 44.8
Lj2g0023539 Lotus japonicus HOM05D005197 ORTHO05D006263 3.8e-09 65.1 97 42.3
CANSAT01G1003 Cannabis sativa HOM05D005197 ORTHO05D006263 1.9e-08 62.8 96 43.8
Lalb_Chr16g0380581 Lupinus albus HOM05D005197 ORTHO05D006263 2.4e-08 62.4 89 46.1
TPR.G36141 Trifolium pratense HOM05D005197 ORTHO05D006263 3.2e-08 62.0 73 54.8
Migut.E01390 Erythranthe guttata HOM05D005197 ORTHO05D006263 4.1e-08 61.6 97 42.3
THA.LOC104824415 Tarenaya hassleriana HOM05D012124 ORTHO05D014419 5.4e-08 61.2 77 48.1
Lsat_1_v5_gn_6_15401 Lactuca sativa HOM05D005197 ORTHO05D006263 1.6e-07 59.7 92 43.5
SEGI_24603 Sequoiadendron giganteum HOM05D005197 ORTHO05D006263 1.6e-07 59.7 52 55.8
Thecc.03G323400 Theobroma cacao HOM05D005197 ORTHO05D006263 1.6e-07 59.7 96 42.7
Glyma.01G150900 Glycine max HOM05D005197 ORTHO05D006263 2.7e-07 58.9 55 56.4
HanXRQChr17g0539691 Helianthus annuus HOM05D005197 ORTHO05D006263 4.6e-07 58.2 112 35.7
Lj8A379T44 Lonicera japonica HOM05D005197 ORTHO05D006263 6.0e-07 57.8 99 42.4
Psat2g143520 Pisum sativum HOM05D005197 ORTHO05D006263 6.0e-07 57.8 101 41.6
Cpa.g.sc305.1 Carica papaya HOM05D005197 ORTHO05D006263 7.8e-07 57.4 99 37.4
Prupe.5G017000 Prunus persica HOM05D005197 ORTHO05D006263 7.8e-07 57.4 104 41.3
CARHR136460 Cardamine hirsuta HOM05D012124 ORTHO05D014419 1.3e-06 56.6 59 54.2
A03p23230 Brassica napus HOM05D012124 ORTHO05D014419 2.3e-06 55.8 48 64.6
C03p27730 Brassica napus HOM05D012124 ORTHO05D014419 2.3e-06 55.8 48 64.6
BraA03t11542Z Brassica rapa HOM05D012124 ORTHO05D014419 2.3e-06 55.8 48 64.6
THA.LOC104803273 Tarenaya hassleriana HOM05D012124 ORTHO05D014419 2.3e-06 55.8 78 46.2
TPR.G17269 Trifolium pratense HOM05D005197 ORTHO05D006263 2.3e-06 55.8 102 42.2
BcaC01g05341 Brassica carinata HOM05D012124 ORTHO05D014419 3.0e-06 55.5 48 62.5
BolC3t15142H Brassica oleracea HOM05D012124 ORTHO05D014419 3.0e-06 55.5 48 62.5
Duzib084G1118 Durio zibethinus HOM05D005197 ORTHO05D006263 3.0e-06 55.5 89 44.9
COL.COLO4_16714 Corchorus olitorius HOM05D005197 ORTHO05D006263 3.9e-06 55.1 85 42.4
AL4G39340 Arabidopsis lyrata HOM05D012124 ORTHO05D014419 5.1e-06 54.7 59 54.2
Ca_25075_v3 Cicer arietinum L. HOM05D005197 ORTHO05D006263 5.1e-06 54.7 99 40.4
ECA233G2979 Erigeron canadensis HOM05D005197 ORTHO05D006263 5.1e-06 54.7 92 38.0
Thhalv10017494m.g Eutrema salsugineum HOM05D012124 ORTHO05D014419 6.6e-06 54.3 63 52.4
AT2G41342 Arabidopsis thaliana HOM05D012124 ORTHO05D014419 8.6e-06 53.9 78 44.9


User provided reference genes

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