Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 4.8e-224 781.2 496 100.0
Haze_08029 Corylus avellana HOM05D006236 ORTHO05D003486 1.3e-99 367.9 461 69.4
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 1.2e-70 271.6 517 40.4
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 2.2e-59 234.2 534 44.4
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 1.4e-26 125.2 115 52.2
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 6.6e-24 116.3 110 50.0
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 6.6e-24 116.3 110 49.1
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 1.1e-23 115.5 110 52.7
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 2.1e-22 111.3 110 47.3
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.1e-21 109.0 119 42.0
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 1.5e-20 105.1 106 49.1
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 2.6e-20 104.4 553 29.3
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 4.5e-20 103.6 269 31.6
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 4.5e-20 103.6 135 39.3
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 9.9e-20 102.4 138 41.3
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 1.3e-19 102.1 118 41.5
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 1.7e-19 101.7 112 50.9
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 2.9e-19 100.9 108 47.2
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 6.4e-19 99.8 142 40.1
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 8.4e-19 99.4 112 44.6
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 1.4e-18 98.6 114 40.4
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 2.4e-18 97.8 116 41.4
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 2.4e-18 97.8 264 29.9
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 3.2e-18 97.4 99 47.5
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 3.2e-18 97.4 109 45.9
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 4.2e-18 97.1 530 24.3
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 5.4e-18 96.7 116 44.8
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 7.1e-18 96.3 110 44.5
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 7.1e-18 96.3 114 42.1
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 1.2e-17 95.5 113 41.6
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 2.7e-17 94.4 123 44.7
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 4.6e-17 93.6 102 41.2
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 4.6e-17 93.6 111 44.1
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 6.0e-17 93.2 512 23.6
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 7.9e-17 92.8 109 44.0
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 1.3e-16 92.0 108 42.6
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 1.3e-16 92.0 114 38.6
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 1.3e-16 92.0 232 29.3
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 8.7e-16 89.4 112 42.9
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 8.7e-16 89.4 97 45.4
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 1.1e-15 89.0 117 43.6
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 1.5e-15 88.6 114 38.6
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 1.5e-15 88.6 512 23.0
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.9e-15 88.2 111 41.4
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 4.3e-15 87.0 121 39.7
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 4.3e-15 87.0 108 38.0
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 5.6e-15 86.7 107 44.9
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 7.4e-15 86.3 114 42.1
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 7.4e-15 86.3 114 36.8
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 2.1e-14 84.7 101 43.6
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 2.1e-14 84.7 112 42.9
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 2.1e-14 84.7 111 44.1
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 2.8e-14 84.3 220 33.2
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 2.8e-14 84.3 102 40.2
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 2.8e-14 84.3 476 32.6
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 3.7e-14 84.0 99 41.4
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 3.7e-14 84.0 74 51.4
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 3.7e-14 84.0 113 38.1
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 4.8e-14 83.6 119 36.1
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 4.8e-14 83.6 100 43.0
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 4.8e-14 83.6 111 38.7
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 6.2e-14 83.2 107 40.2
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 6.2e-14 83.2 108 38.0
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 8.1e-14 82.8 109 43.1
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 8.1e-14 82.8 125 35.2
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.1e-13 82.4 110 39.1
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 1.1e-13 82.4 111 37.8
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 1.1e-13 82.4 113 38.1
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 1.4e-13 82.0 108 36.1
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 1.8e-13 81.6 102 44.1
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 1.8e-13 81.6 87 44.8
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 1.8e-13 81.6 115 43.5
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 2.4e-13 81.3 149 34.2
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 2.4e-13 81.3 185 30.8
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 3.1e-13 80.9 110 40.0
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 4.0e-13 80.5 102 43.1
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 5.3e-13 80.1 110 40.0
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 5.3e-13 80.1 132 36.4
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 5.3e-13 80.1 120 38.3
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 6.9e-13 79.7 172 28.5
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 9.0e-13 79.3 102 43.1
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 9.0e-13 79.3 112 39.3
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 1.2e-12 79.0 132 36.4
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.2e-12 79.0 110 37.3
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 1.2e-12 79.0 108 41.7
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.2e-12 79.0 115 40.9
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 1.5e-12 78.6 189 28.0
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.5e-12 78.6 106 35.8
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 2.0e-12 78.2 113 38.1
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 2.6e-12 77.8 113 33.6
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 3.4e-12 77.4 106 38.7
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 4.5e-12 77.0 112 35.7
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 5.8e-12 76.6 112 34.8
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 5.8e-12 76.6 112 34.8
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 5.8e-12 76.6 109 38.5
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 7.6e-12 76.3 132 37.9
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 7.6e-12 76.3 113 34.5
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 7.6e-12 76.3 119 35.3
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 9.9e-12 75.9 110 38.2
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 9.9e-12 75.9 102 39.2
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 9.9e-12 75.9 150 31.3
Cpa.g.sc1156.3 Carica papaya HOM05D006236 ORTHO05D003486 1.7e-11 75.1 52 59.6
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 2.2e-11 74.7 171 27.5
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 2.2e-11 74.7 104 40.4
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 2.2e-11 74.7 109 37.6
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 2.9e-11 74.3 110 33.6
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 2.9e-11 74.3 110 33.6
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 2.9e-11 74.3 108 38.9
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 3.8e-11 73.9 171 28.7
Migut.C01072 Erythranthe guttata HOM05D006236 ORTHO05D003486 3.8e-11 73.9 208 28.4
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 3.8e-11 73.9 109 41.3
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 3.8e-11 73.9 111 34.2
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 3.8e-11 73.9 109 37.6
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 4.9e-11 73.6 106 37.7
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 4.9e-11 73.6 105 37.1
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 6.4e-11 73.2 112 36.6
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 6.4e-11 73.2 196 31.6
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 8.4e-11 72.8 110 37.3
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 8.4e-11 72.8 112 33.0
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 1.1e-10 72.4 149 31.5
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 1.4e-10 72.0 110 32.7
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.9e-10 71.6 126 33.3
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.9e-10 71.6 106 38.7
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 2.4e-10 71.2 113 38.1
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 2.4e-10 71.2 110 32.7
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 2.4e-10 71.2 110 32.7
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.4e-10 71.2 109 38.5
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 2.4e-10 71.2 111 36.0
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 2.4e-10 71.2 88 42.0
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 2.4e-10 71.2 111 34.2
SGA_v2.0_scaffold52G18912 Striga asiatica HOM05D006236 ORTHO05D003486 2.4e-10 71.2 67 44.8
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 3.2e-10 70.9 106 36.8
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 3.2e-10 70.9 96 43.8
Zm00001eb385310 Zea mays HOM05D006236 ORTHO05D003486 3.2e-10 70.9 89 41.6
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 4.2e-10 70.5 236 29.7
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 5.5e-10 70.1 109 37.6
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 5.5e-10 70.1 109 37.6
CANSAT25G1833 Cannabis sativa HOM05D006236 ORTHO05D003486 5.5e-10 70.1 107 35.5
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 5.5e-10 70.1 225 26.7
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 7.1e-10 69.7 286 25.5
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 7.1e-10 69.7 107 37.4
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 7.1e-10 69.7 129 32.6
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 9.3e-10 69.3 108 37.0
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 9.3e-10 69.3 106 35.8
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 1.2e-09 68.9 104 39.4
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 1.2e-09 68.9 104 39.4
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 1.2e-09 68.9 111 36.9
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 1.2e-09 68.9 104 39.4
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 1.6e-09 68.6 104 39.4
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 1.6e-09 68.6 104 39.4
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 1.6e-09 68.6 111 36.9
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 1.6e-09 68.6 119 34.5
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 2.7e-09 67.8 113 33.6
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.5e-09 67.4 91 44.0
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 4.6e-09 67.0 200 29.5
FAN27G0089 Fragaria x ananassa HOM05D006236 ORTHO05D003486 4.6e-09 67.0 91 42.9
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 4.6e-09 67.0 110 33.6
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 4.6e-09 67.0 110 33.6
Medtr3g097180 Medicago truncatula HOM05D006236 ORTHO05D003486 6.0e-09 66.6 90 35.6
arahy.Tifrunner.gnm1.ann1.3CVD71 Arachis hypogaea HOM05D024686 ORTHO05D003486 7.9e-09 66.2 162 28.4
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.3e-08 64.7 491 22.4
Lsat_1_v5_gn_6_110341 Lactuca sativa HOM05D006236 ORTHO05D003486 3.0e-08 64.3 119 33.6
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 3.0e-08 64.3 109 33.9
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 3.9e-08 63.9 101 33.7
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 1.9e-07 61.6 108 29.6
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 1.9e-07 61.6 108 29.6
PSO170G3037 Papaver somniferum HOM05D020877 ORTHO05D003486 4.3e-07 60.5 111 27.0
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 4.3e-07 60.5 106 33.0
HanXRQChr05g0149711 Helianthus annuus HOM05D006236 ORTHO05D003486 5.6e-07 60.1 114 32.5
PSO528G0175 Papaver somniferum HOM05D020877 ORTHO05D003486 7.4e-07 59.7 111 26.1
PSO528G0025 Papaver somniferum HOM05D020877 ORTHO05D003486 1.3e-06 58.9 111 27.9
Gohir.D02G077700 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.6e-06 58.5 96 37.5
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 2.8e-06 57.8 106 28.3
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 3.7e-06 57.4 106 28.3
Pp3c14_13780 Physcomitrium patens HOM05D002377 ORTHO05D003486 3.7e-06 57.4 98 33.7
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 3.7e-06 57.4 106 31.1
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 4.8e-06 57.0 91 35.2
Mapoly0015s0190 Marchantia polymorpha HOM05D006236 ORTHO05D003486 6.2e-06 56.6 102 29.4


User provided reference genes

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