Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012616 Carpinus fangiana HOM05D006619 ORTHO05D008351 2.1e-186 655.6 349 100.0
Haze_08049 Corylus avellana HOM05D006619 ORTHO05D008351 5.5e-126 454.9 258 93.0
Haze_08039 Corylus avellana HOM05D006619 ORTHO05D008351 4.9e-122 441.8 250 93.2
CiPaw.11G070000 Carya illinoinensis HOM05D006619 ORTHO05D008351 4.6e-112 408.7 359 66.0
Prupe.5G014600 Prunus persica HOM05D006619 ORTHO05D008351 1.7e-103 380.2 356 62.6
RcHm_v2.0_Chr7g0215151 Rosa chinensis HOM05D006619 ORTHO05D008351 2.4e-97 359.8 344 61.9
MD06G1011900 Malus domestica HOM05D006619 ORTHO05D008351 4.6e-96 355.5 351 58.7
FvH4_5g24810 Fragaria vesca HOM05D006619 ORTHO05D008351 1.3e-95 354.0 358 59.8
FAN18G2839 Fragaria x ananassa HOM05D006619 ORTHO05D008351 1.3e-95 354.0 359 59.6
TAR629G0027 Trochodendron aralioides HOM05D006619 ORTHO05D008351 1.3e-95 354.0 366 57.9
FAN04G1190 Fragaria x ananassa HOM05D006619 ORTHO05D008351 1.9e-94 350.1 358 59.2
Thecc.03G321400 Theobroma cacao HOM05D006619 ORTHO05D008351 3.3e-94 349.4 361 55.4
FAN08G1468 Fragaria x ananassa HOM05D006619 ORTHO05D008351 4.3e-94 349.0 358 59.2
FAN13G0980 Fragaria x ananassa HOM05D006619 ORTHO05D008351 2.8e-93 346.3 363 58.7
TWI60G1390 Tripterygium wilfordii HOM05D006619 ORTHO05D008351 8.1e-93 344.7 357 57.4
Duzib084G0833 Durio zibethinus HOM05D006619 ORTHO05D008351 2.3e-92 343.2 357 55.5
GSVIVG01036901001 Vitis vinifera HOM05D006619 ORTHO05D008351 1.1e-89 334.3 320 60.3
Dinv37439 Davidia involucrata HOM05D006619 ORTHO05D008351 3.2e-89 332.8 328 58.8
Lalb_Chr16g0380481 Lupinus albus HOM05D006619 ORTHO05D008351 4.1e-89 332.4 351 53.8
COL.COLO4_16736 Corchorus olitorius HOM05D006619 ORTHO05D008351 4.6e-88 328.9 369 53.9
Glyma.09G217700 Glycine max HOM05D006619 ORTHO05D008351 6.0e-88 328.6 338 56.5
Rhsim07G0140900 Rhododendron simsii HOM05D006619 ORTHO05D008351 1.3e-87 327.4 365 52.3
Ciclev10001580m.g Citrus clementina HOM05D006619 ORTHO05D008351 5.1e-87 325.5 359 53.5
Lj2g0025157 Lotus japonicus HOM05D006619 ORTHO05D008351 6.6e-87 325.1 342 56.1
Actinidia18172 Actinidia chinensis HOM05D006619 ORTHO05D008351 2.5e-86 323.2 365 50.4
Dinv09413 Davidia involucrata HOM05D006619 ORTHO05D008351 2.8e-85 319.7 316 59.8
Duzib205G1329 Durio zibethinus HOM05D006619 ORTHO05D008351 1.1e-84 317.8 348 56.0
Glyma.01G152500 Glycine max HOM05D006619 ORTHO05D008351 1.4e-84 317.4 363 54.3
Manes.17G002400 Manihot esculenta HOM05D006619 ORTHO05D008351 9.0e-84 314.7 344 54.1
Gorai.004G176600 Gossypium raimondii HOM05D006619 ORTHO05D008351 1.5e-83 313.9 317 54.9
Gohir.D08G169400 Gossypium hirsutum HOM05D006619 ORTHO05D008351 2.0e-83 313.5 317 54.9
Sabra01G0179200 Salix brachista HOM05D006619 ORTHO05D008351 5.8e-83 312.0 362 52.5
Gohir.A08G148300 Gossypium hirsutum HOM05D006619 ORTHO05D008351 2.9e-82 309.7 317 53.3
Lalb_Chr05g0215221 Lupinus albus HOM05D006619 ORTHO05D008351 4.2e-81 305.8 353 52.1
Psat0s808g0080 Pisum sativum HOM05D006619 ORTHO05D008351 5.1e-79 298.9 347 49.6
TPR.G7876 Trifolium pratense HOM05D006619 ORTHO05D008351 5.1e-79 298.9 351 51.9
Medtr5g025800 Medicago truncatula HOM05D006619 ORTHO05D008351 3.3e-78 296.2 354 52.0
Eucgr.D02571 Eucalyptus grandis HOM05D006619 ORTHO05D008351 1.8e-76 290.4 346 50.3
Atru.chr6.2146 Acer truncatum HOM05D006619 ORTHO05D008351 9.9e-75 284.6 357 49.0
Peaxi162Scf00014g02116 Petunia axillaris HOM05D006619 ORTHO05D008351 2.9e-74 283.1 352 48.6
Phvul.002G123000 Phaseolus vulgaris HOM05D006619 ORTHO05D008351 3.8e-74 282.7 338 50.6
Ca_25054_v3 Cicer arietinum L. HOM05D006619 ORTHO05D008351 9.3e-73 278.1 350 49.4
VMungo1215G3049 Vigna mungo HOM05D006619 ORTHO05D008351 2.7e-72 276.6 324 50.3
PSO017G2194 Papaver somniferum HOM05D006619 ORTHO05D008351 4.3e-70 269.2 359 47.4
Aqoxy3G01986 Aquilegia oxysepala HOM05D006619 ORTHO05D008351 3.7e-69 266.2 356 44.7
Nitab4.5_0000236g0060 Nicotiana tabacum HOM05D006619 ORTHO05D008351 3.7e-69 266.2 377 46.7
Nitab4.5_0000975g0010 Nicotiana tabacum HOM05D006619 ORTHO05D008351 8.1e-69 265.0 377 47.5
PGR031G2471 Punica granatum HOM05D006619 ORTHO05D008351 8.1e-69 265.0 341 48.4
PSO170G1900 Papaver somniferum HOM05D006619 ORTHO05D008351 2.4e-68 263.5 357 47.3
Lj8A366T23 Lonicera japonica HOM05D006619 ORTHO05D008351 3.1e-68 263.1 301 52.2
PGSC0003DMG400020810 Solanum tuberosum HOM05D006619 ORTHO05D008351 3.1e-68 263.1 343 46.9
QL12p003333 Quercus lobata HOM05D006619 ORTHO05D008351 5.3e-68 262.3 197 72.6
Sopen08g023780 Solanum pennellii HOM05D006619 ORTHO05D008351 1.5e-67 260.8 343 46.4
Potri.004G234300 Populus trichocarpa HOM05D006619 ORTHO05D008351 5.5e-65 252.3 273 57.1
HanXRQChr06g0173221 Helianthus annuus HOM05D006619 ORTHO05D008351 9.3e-65 251.5 334 47.3
Solyc08g075150.3 Solanum lycopersicum HOM05D006619 ORTHO05D008351 9.3e-65 251.5 343 45.2
Cc08_g06080 Coffea canephora HOM05D006619 ORTHO05D008351 3.5e-64 249.6 360 44.7
CSS0018284 Camellia sinensis var. sinensis HOM05D006619 ORTHO05D008351 4.6e-64 249.2 300 51.3
DCAR_004540 Daucus carota HOM05D006619 ORTHO05D008351 4.6e-64 249.2 358 44.4
Lsat_1_v5_gn_3_19920 Lactuca sativa HOM05D006619 ORTHO05D008351 8.7e-63 245.0 303 49.5
ECA246G4124 Erigeron canadensis HOM05D006619 ORTHO05D008351 4.3e-62 242.7 344 45.3
ClCG11G016190 Citrullus lanatus HOM05D006619 ORTHO05D008351 2.4e-60 236.9 356 44.4
Migut.E01382 Erythranthe guttata HOM05D006619 ORTHO05D008351 1.7e-58 230.7 351 43.9
AUR62010492 Chenopodium quinoa HOM05D006619 ORTHO05D008351 6.5e-58 228.8 327 45.3
Sc07g0008130 Simmondsia chinensis HOM05D006619 ORTHO05D008351 1.6e-56 224.2 313 46.0
ATR0568G188 Amborella trichopoda HOM05D006619 ORTHO05D008351 7.9e-56 221.9 317 45.1
THA.LOC104811203 Tarenaya hassleriana HOM05D006619 ORTHO05D008351 5.1e-55 219.2 355 40.8
AUR62017411 Chenopodium quinoa HOM05D006619 ORTHO05D008351 1.5e-54 217.6 329 44.7
Ah.12g058350 Amaranthus hybridus HOM05D006619 ORTHO05D008351 3.3e-54 216.5 319 43.9
EL10Ac5g12595 Beta vulgaris HOM05D006619 ORTHO05D008351 9.7e-54 214.9 274 49.6
CDE01G0342 Ceratophyllum demersum HOM05D006619 ORTHO05D008351 2.8e-53 213.4 334 39.8
CANSAT35G0271 Cannabis sativa HOM05D006619 ORTHO05D008351 3.1e-52 209.9 317 47.6
MELO3C010535.2 Cucumis melo HOM05D006619 ORTHO05D008351 1.2e-51 208.0 295 46.8
CsaV3_4G014810 Cucumis sativus L. HOM05D006619 ORTHO05D008351 1.5e-51 207.6 297 45.5
arahy.Tifrunner.gnm1.ann1.7E2RQS Arachis hypogaea HOM05D006619 ORTHO05D008351 4.5e-51 206.1 324 43.8
arahy.Tifrunner.gnm1.ann1.TY5C82 Arachis hypogaea HOM05D006619 ORTHO05D008351 4.5e-51 206.1 324 43.8
Sed0005654 Sechium edule HOM05D006619 ORTHO05D008351 6.7e-47 192.2 272 46.3
Hund14312 Selenicereus undatus HOM05D006619 ORTHO05D008351 1.9e-46 190.7 246 48.8
QL12p003340 Quercus lobata HOM05D006619 ORTHO05D008351 1.3e-45 188.0 187 59.9
Cpa.g.sc137.4 Carica papaya HOM05D006619 ORTHO05D008351 3.7e-45 186.4 266 44.7
Manes.15G190475 Manihot esculenta HOM05D006619 ORTHO05D008351 5.3e-44 182.6 229 49.8
Sed0000478 Sechium edule HOM05D006619 ORTHO05D008351 1.3e-42 177.9 352 40.1
SHI32758 Sapria himalayana HOM05D006619 ORTHO05D008351 1.7e-42 177.6 353 36.8
SGA_v2.0_scaffold121G33054 Striga asiatica HOM05D006619 ORTHO05D008351 6.5e-42 175.6 331 36.9
Nn1g09329 Nelumbo nucifera HOM05D006619 ORTHO05D008351 9.4e-41 171.8 208 52.4
SEGI_11154 Sequoiadendron giganteum HOM05D006619 ORTHO05D008351 2.1e-40 170.6 287 40.1
AT5G45310 Arabidopsis thaliana HOM05D006619 ORTHO05D008351 2.3e-39 167.2 346 36.4
Sp2g10250 Schrenkiella parvula HOM05D006619 ORTHO05D008351 3.9e-39 166.4 358 35.5
Thhalv10001132m.g Eutrema salsugineum HOM05D006619 ORTHO05D008351 4.4e-38 162.9 356 34.6
AL8G13490 Arabidopsis lyrata HOM05D006619 ORTHO05D008351 1.3e-37 161.4 346 35.8
A09p21640 Brassica napus HOM05D006619 ORTHO05D008351 1.3e-37 161.4 338 38.2
BraA09t37763Z Brassica rapa HOM05D006619 ORTHO05D008351 1.7e-37 161.0 337 37.7
BcaC04g21786 Brassica carinata HOM05D006619 ORTHO05D008351 8.2e-37 158.7 358 35.8
BolC9t55627H Brassica oleracea HOM05D006619 ORTHO05D008351 8.2e-37 158.7 358 35.8
CARHR176830 Cardamine hirsuta HOM05D006619 ORTHO05D008351 8.2e-37 158.7 366 33.9
C09p27640 Brassica napus HOM05D006619 ORTHO05D008351 1.1e-36 158.3 358 35.5
BcaB07g30899 Brassica carinata HOM05D006619 ORTHO05D008351 1.8e-36 157.5 351 36.2
Aa31LG9G7710 Aethionema arabicum HOM05D006619 ORTHO05D008351 5.9e-35 152.5 356 34.8
SalBow8G3333 Salvia bowleyana HOM05D006619 ORTHO05D008351 1.9e-33 147.5 331 35.0
SalBow1G1985 Salvia bowleyana HOM05D006619 ORTHO05D008351 2.5e-33 147.1 331 35.0
Oeu045949.2 Olea europaea HOM05D006619 ORTHO05D008351 2.3e-31 140.6 142 54.2
SMO367G0687 Selaginella moellendorffii HOM05D003392 ORTHO05D003801 7.7e-27 125.6 253 35.2
HPP92_015143 Vanilla planifolia HOM05D000346 ORTHO05D004932 1.9e-25 120.9 253 34.8
Carub.0008s0284 Capsella rubella HOM05D006619 ORTHO05D008351 1.2e-24 118.2 278 33.8
COL.COLO4_16514 Corchorus olitorius HOM05D006619 ORTHO05D008351 1.6e-24 117.9 235 39.6
Zm00001eb140380 Zea mays HOM05D006619 ORTHO05D008351 1.1e-20 105.1 265 28.3
AagrBONN_evm.TU.Sc2ySwM_117.1666 Anthoceros agrestis HOM05D006619 ORTHO05D008351 1.0e-18 98.6 280 32.9
Pp3c25_50 Physcomitrium patens HOM05D006619 ORTHO05D008351 1.3e-18 98.2 360 28.6
EL10Ac5g12596 Beta vulgaris HOM05D006619 ORTHO05D008351 1.9e-17 94.4 270 31.1
AagrBONN_evm.TU.Sc2ySwM_344.2089 Anthoceros agrestis HOM05D006619 ORTHO05D008351 7.2e-17 92.4 329 28.9
Os01g0962100 Oryza sativa ssp. japonica HOM05D006619 ORTHO05D008351 1.2e-16 91.7 304 28.0
Hund28917 Selenicereus undatus HOM05D006619 ORTHO05D008351 9.8e-14 82.0 112 43.8
Hund28918 Selenicereus undatus HOM05D006619 ORTHO05D008351 9.8e-14 82.0 112 43.8
MD16G1286500 Malus domestica HOM05D006619 ORTHO05D008351 1.3e-10 71.6 135 40.0
HanXRQChr04g0096591 Helianthus annuus HOM05D006619 ORTHO05D008351 5.5e-09 66.2 119 35.3
COL.COLO4_08066 Corchorus olitorius HOM05D004199 ORTHO05D025158 1.6e-08 64.7 126 39.7
Nn1g09286 Nelumbo nucifera HOM05D006619 ORTHO05D008351 1.8e-07 61.2 80 48.8


User provided reference genes

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