Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012604 Carpinus fangiana HOM05D007357 ORTHO05D009314 1.3e-101 373.2 212 100.0
Haze_08047 Corylus avellana HOM05D007357 ORTHO05D009314 1.9e-76 289.7 212 78.8
Haze_08057 Corylus avellana HOM05D007357 ORTHO05D009314 3.9e-50 202.2 212 60.8
CiPaw.11G103400 Carya illinoinensis HOM05D007357 ORTHO05D009314 2.0e-46 189.9 198 59.1
QL02p024644 Quercus lobata HOM05D007357 ORTHO05D009314 2.9e-45 186.0 219 56.6
CsaV3_3G030320 Cucumis sativus L. HOM05D007357 ORTHO05D009314 2.6e-41 172.9 225 52.0
CSS0024010 Camellia sinensis var. sinensis HOM05D007357 ORTHO05D009314 3.3e-41 172.6 223 49.8
Actinidia14748 Actinidia chinensis HOM05D007357 ORTHO05D009314 7.4e-41 171.4 222 49.5
Prupe.5G019800 Prunus persica HOM05D007357 ORTHO05D009314 2.6e-38 162.9 221 49.8
TAR629G3058 Trochodendron aralioides HOM05D007357 ORTHO05D009314 1.0e-37 161.0 220 48.2
ClCG07G002370 Citrullus lanatus HOM05D007357 ORTHO05D009314 2.9e-37 159.5 225 48.9
Sed0001819 Sechium edule HOM05D007357 ORTHO05D009314 1.5e-36 157.1 227 48.5
Rhsim07G0138300 Rhododendron simsii HOM05D007357 ORTHO05D009314 5.5e-36 155.2 220 45.5
FvH4_5g24040 Fragaria vesca HOM05D007357 ORTHO05D009314 3.6e-35 152.5 150 57.3
FAN18G2492 Fragaria x ananassa HOM05D007357 ORTHO05D009314 3.6e-35 152.5 150 57.3
FAN18G4511 Fragaria x ananassa HOM05D007357 ORTHO05D009314 3.6e-35 152.5 150 57.3
RcHm_v2.0_Chr7g0213521 Rosa chinensis HOM05D007357 ORTHO05D009314 3.6e-35 152.5 180 52.2
VMungo1215G1709 Vigna mungo HOM05D007357 ORTHO05D009314 1.8e-34 150.2 215 47.0
FAN08G0560 Fragaria x ananassa HOM05D007357 ORTHO05D009314 4.0e-34 149.1 150 56.0
Gohir.D12G206000 Gossypium hirsutum HOM05D007357 ORTHO05D009314 4.0e-34 149.1 223 46.6
Gorai.008G220900 Gossypium raimondii HOM05D007357 ORTHO05D009314 1.1e-33 147.5 222 46.8
arahy.Tifrunner.gnm1.ann1.0Q5JCD Arachis hypogaea HOM05D007357 ORTHO05D009314 1.5e-33 147.1 218 46.8
arahy.Tifrunner.gnm1.ann1.JPN6B0 Arachis hypogaea HOM05D007357 ORTHO05D009314 1.5e-33 147.1 218 46.8
MELO3C022754.2 Cucumis melo HOM05D007357 ORTHO05D009314 1.5e-33 147.1 225 46.7
Phvul.002G128100 Phaseolus vulgaris HOM05D007357 ORTHO05D009314 1.5e-33 147.1 219 45.2
Gohir.A12G203400 Gossypium hirsutum HOM05D007357 ORTHO05D009314 2.0e-33 146.7 222 45.9
Nn4g25471 Nelumbo nucifera HOM05D007357 ORTHO05D009314 2.0e-33 146.7 201 47.3
MD06G1015900 Malus domestica HOM05D007357 ORTHO05D009314 2.6e-33 146.4 222 45.9
FvH4_3g08760 Fragaria vesca HOM05D007357 ORTHO05D009314 4.4e-33 145.6 150 54.7
Nitab4.5_0001033g0080 Nicotiana tabacum HOM05D007357 ORTHO05D009314 5.7e-33 145.2 231 42.4
Sed0016962 Sechium edule HOM05D007357 ORTHO05D009314 1.1e-31 141.0 224 45.1
Sopen08g024580 Solanum pennellii HOM05D007357 ORTHO05D009314 3.1e-31 139.4 229 41.5
PGSC0003DMG400030879 Solanum tuberosum HOM05D007357 ORTHO05D009314 3.1e-31 139.4 229 41.9
Peaxi162Scf00408g00712 Petunia axillaris HOM05D007357 ORTHO05D009314 4.1e-31 139.0 235 41.7
TWI34G1422 Tripterygium wilfordii HOM05D007357 ORTHO05D009314 1.2e-30 137.5 214 45.3
COL.COLO4_16848 Corchorus olitorius HOM05D007357 ORTHO05D009314 1.6e-30 137.1 221 43.4
Oeu059314.1 Olea europaea HOM05D007357 ORTHO05D009314 1.6e-30 137.1 181 47.0
Cc08_g05250 Coffea canephora HOM05D007357 ORTHO05D009314 2.7e-30 136.3 238 39.9
TWI34G1682 Tripterygium wilfordii HOM05D007357 ORTHO05D009314 4.5e-30 135.6 213 44.1
Potri.001G132232 Populus trichocarpa HOM05D007357 ORTHO05D009314 1.0e-29 134.4 157 49.0
vmacro13970 Vaccinium macrocarpon HOM05D007357 ORTHO05D009314 2.9e-29 132.9 223 41.7
CANSAT21G2249 Cannabis sativa HOM05D007357 ORTHO05D009314 3.8e-29 132.5 211 46.0
CSS0046502 Camellia sinensis var. sinensis HOM05D007357 ORTHO05D009314 6.5e-29 131.7 194 45.9
Manes.17G008100 Manihot esculenta HOM05D007357 ORTHO05D009314 8.5e-29 131.3 213 43.2
Ah.07g201200 Amaranthus hybridus HOM05D007357 ORTHO05D009314 1.1e-28 131.0 217 42.9
Cpa.g.sc223.2 Carica papaya HOM05D007357 ORTHO05D009314 1.1e-28 131.0 227 44.1
Migut.A00548 Erythranthe guttata HOM05D007357 ORTHO05D009314 1.9e-28 130.2 172 45.3
Glyma.01G150100 Glycine max HOM05D007357 ORTHO05D009314 5.5e-28 128.6 215 44.2
CAN.G1269.3 Capsicum annuum HOM05D007357 ORTHO05D009314 1.2e-27 127.5 178 44.9
Hma1.2p1_1179F.1_g264570 Hydrangea macrophylla HOM05D007357 ORTHO05D009314 2.7e-27 126.3 131 55.7
ECA246G3443 Erigeron canadensis HOM05D007357 ORTHO05D009314 3.6e-27 125.9 203 41.4
HanXRQChr17g0539311 Helianthus annuus HOM05D007357 ORTHO05D009314 8.0e-27 124.8 223 39.5
AUR62007392 Chenopodium quinoa HOM05D007357 ORTHO05D009314 1.0e-26 124.4 157 45.9
Lj2g0006468 Lotus japonicus HOM05D007357 ORTHO05D009314 1.0e-26 124.4 221 42.5
AUR62027337 Chenopodium quinoa HOM05D007357 ORTHO05D009314 3.0e-26 122.9 200 40.0
AUR62044266 Chenopodium quinoa HOM05D007357 ORTHO05D009314 3.0e-26 122.9 200 40.0
Ciclev10002529m.g Citrus clementina HOM05D007357 ORTHO05D009314 8.8e-26 121.3 221 39.8
Sc07g0008390 Simmondsia chinensis HOM05D007357 ORTHO05D009314 1.2e-25 120.9 152 47.4
DCAR_008186 Daucus carota HOM05D007357 ORTHO05D009314 3.4e-25 119.4 231 38.1
unitig_32.g10966 Utricularia gibba HOM05D007357 ORTHO05D009314 3.4e-25 119.4 234 36.8
HPP92_025510 Vanilla planifolia HOM05D007357 ORTHO05D009314 9.8e-25 117.9 218 39.9
Medtr5g026790 Medicago truncatula HOM05D007357 ORTHO05D009314 6.3e-24 115.2 224 41.5
PSO063G0202 Papaver somniferum HOM05D007357 ORTHO05D009314 8.3e-24 114.8 147 44.9
Lsat_1_v5_gn_3_28060 Lactuca sativa HOM05D007357 ORTHO05D009314 1.1e-23 114.4 218 36.7
Eucgr.D02601 Eucalyptus grandis HOM05D007357 ORTHO05D009314 1.8e-23 113.6 152 44.7
Duzib068G0657 Durio zibethinus HOM05D007357 ORTHO05D009314 2.4e-23 113.2 190 43.2
Lalb_Chr05g0215411 Lupinus albus HOM05D007357 ORTHO05D009314 2.4e-23 113.2 218 40.8
HPP92_025525 Vanilla planifolia HOM05D007357 ORTHO05D009314 2.4e-23 113.2 218 38.5
ATR0829G081 Amborella trichopoda HOM05D007357 ORTHO05D009314 5.4e-23 112.1 149 43.0
Oeu042216.1 Olea europaea HOM05D007357 ORTHO05D009314 1.6e-22 110.5 237 37.6
MD06G1016600 Malus domestica HOM05D007357 ORTHO05D009314 4.5e-22 109.0 208 40.9
Psat2g142360 Pisum sativum HOM05D007357 ORTHO05D009314 2.2e-21 106.7 221 40.3
Aqoxy5G03983 Aquilegia oxysepala HOM05D007357 ORTHO05D009314 5.0e-21 105.5 175 38.3
Solyc08g075930.4 Solanum lycopersicum HOM05D007357 ORTHO05D009314 6.5e-21 105.1 199 39.2
CDE12G0114 Ceratophyllum demersum HOM05D007357 ORTHO05D009314 2.5e-20 103.2 215 35.3
ECA240G0146 Erigeron canadensis HOM05D007357 ORTHO05D009314 2.1e-19 100.1 217 34.6
FAN11G2380 Fragaria x ananassa HOM05D007357 ORTHO05D009314 8.0e-19 98.2 76 63.2
EL10Ac5g11952 Beta vulgaris HOM05D000153 ORTHO05D000118 1.4e-18 97.4 74 68.9
TPR.G17258 Trifolium pratense HOM05D007357 ORTHO05D009314 1.4e-18 97.4 78 65.4
Glyma.09G214200 Glycine max HOM05D007357 ORTHO05D009314 2.3e-18 96.7 213 36.6
Os07g0452600 Oryza sativa ssp. japonica HOM05D007357 ORTHO05D009314 4.0e-18 95.9 146 39.7
SGA_v2.0_scaffold89G27413 Striga asiatica HOM05D003343 ORTHO05D003787 4.0e-18 95.9 196 38.3
TWI79G1144 Tripterygium wilfordii HOM05D007357 ORTHO05D009314 5.2e-18 95.5 185 42.2
Nitab4.5_0001786g0050 Nicotiana tabacum HOM05D007357 ORTHO05D009314 6.8e-18 95.1 214 36.4
Zm00001eb096560 Zea mays HOM05D007357 ORTHO05D009314 1.5e-17 94.0 171 35.1
arahy.Tifrunner.gnm1.ann1.L1IIZH Arachis hypogaea HOM05D007357 ORTHO05D009314 2.0e-17 93.6 161 42.2
Sabra01G0102000 Salix brachista HOM05D007357 ORTHO05D009314 3.4e-17 92.8 78 57.7
Thecc.03G316500 Theobroma cacao HOM05D007357 ORTHO05D009314 1.1e-15 87.8 160 41.2
PSO782G0982 Papaver somniferum HOM05D007357 ORTHO05D009314 5.4e-15 85.5 119 43.7
Os08g0180400 Oryza sativa ssp. japonica HOM05D007357 ORTHO05D009314 1.2e-14 84.3 77 50.6
Hund11140 Selenicereus undatus HOM05D007357 ORTHO05D009314 3.5e-14 82.8 162 37.7
CSS0020054 Camellia sinensis var. sinensis HOM05D007357 ORTHO05D009314 8.6e-13 78.2 58 74.1
CSS0037866 Camellia sinensis var. sinensis HOM05D007357 ORTHO05D009314 3.3e-12 76.3 58 72.4
MD06G1016300 Malus domestica HOM05D007357 ORTHO05D009314 1.6e-11 73.9 59 64.4
Ca_25098_v3 Cicer arietinum L. HOM05D007357 ORTHO05D009314 1.0e-10 71.2 193 35.8
Hma1.2p1_0784F.1_g217055 Hydrangea macrophylla HOM05D007357 ORTHO05D009314 2.3e-10 70.1 57 63.2
Hma1.2p1_0944F.1_g240000 Hydrangea macrophylla HOM05D007357 ORTHO05D009314 2.3e-10 70.1 57 63.2
arahy.Tifrunner.gnm1.ann1.F5EPY8 Arachis hypogaea HOM05D007357 ORTHO05D009314 4.0e-10 69.3 48 72.9
Nitab4.5_0018136g0010 Nicotiana tabacum HOM05D007357 ORTHO05D009314 6.8e-10 68.6 67 52.2
Zm00001eb171770 Zea mays HOM05D007357 ORTHO05D009314 2.2e-08 63.5 124 31.5
Oeu059300.1 Olea europaea HOM05D007357 ORTHO05D009314 1.8e-07 60.5 54 63.0
PGR031G1183 Punica granatum HOM05D007357 ORTHO05D009314 7.8e-06 55.1 51 56.9


User provided reference genes

Program Settings