Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 7.9e-48 195.7 457 100.0
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 8.8e-31 139.0 82 81.7
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 5.7e-30 136.3 81 86.4
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 1.3e-29 135.2 83 78.3
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 8.2e-29 132.5 82 79.3
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 1.6e-27 128.3 80 75.0
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 2.7e-27 127.5 78 79.5
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 7.7e-27 125.9 81 75.3
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 2.9e-26 124.0 84 73.8
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 1.9e-25 121.3 79 72.2
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 7.2e-25 119.4 83 68.7
Sed0024338 Sechium edule HOM05D005674 ORTHO05D007015 7.2e-25 119.4 79 69.6
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 9.4e-25 119.0 84 67.9
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 1.2e-24 118.6 83 67.5
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.2e-24 118.6 78 70.5
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 1.2e-24 118.6 81 67.9
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 1.2e-24 118.6 83 63.9
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 1.6e-24 118.2 81 71.6
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 2.1e-24 117.9 84 66.7
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 2.7e-24 117.5 81 65.4
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 2.7e-24 117.5 82 69.5
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 3.6e-24 117.1 82 63.4
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 3.6e-24 117.1 80 67.5
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 6.1e-24 116.3 81 67.9
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 8.0e-24 115.9 82 62.2
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 8.0e-24 115.9 82 62.2
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 1.0e-23 115.5 79 67.1
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 1.4e-23 115.2 84 66.7
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 1.8e-23 114.8 81 67.9
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 4.0e-23 113.6 80 67.5
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 5.2e-23 113.2 77 68.8
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 5.2e-23 113.2 84 64.3
Dinv11955 Davidia involucrata HOM05D005674 ORTHO05D007015 8.8e-23 112.5 73 74.0
Phvul.009G126100 Phaseolus vulgaris HOM05D005674 ORTHO05D007015 8.8e-23 112.5 81 67.9
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 1.2e-22 112.1 84 65.5
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 1.2e-22 112.1 78 69.2
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.5e-22 111.7 70 77.1
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 2.0e-22 111.3 70 77.1
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 2.6e-22 110.9 80 67.5
arahy.Tifrunner.gnm1.ann1.JH6JIJ Arachis hypogaea HOM05D005674 ORTHO05D007015 3.4e-22 110.5 78 66.7
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 3.4e-22 110.5 70 77.1
Psat0s443g0080 Pisum sativum HOM05D005674 ORTHO05D007015 3.4e-22 110.5 84 63.1
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 5.7e-22 109.8 83 60.2
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 9.8e-22 109.0 80 63.8
Ca_14577_v3 Cicer arietinum L. HOM05D005674 ORTHO05D007015 1.7e-21 108.2 84 63.1
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 2.2e-21 107.8 70 75.7
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 2.2e-21 107.8 84 64.3
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 3.7e-21 107.1 76 67.1
Solyc02g086230.2 Solanum lycopersicum HOM05D005674 ORTHO05D007015 4.8e-21 106.7 83 59.0
Sopen02g030910 Solanum pennellii HOM05D005674 ORTHO05D007015 4.8e-21 106.7 83 59.0
PGSC0003DMG400026386 Solanum tuberosum HOM05D005674 ORTHO05D007015 6.3e-21 106.3 83 59.0
TWI12G0566 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 8.3e-21 105.9 67 74.6
Duzib116G0841 Durio zibethinus HOM05D005674 ORTHO05D007015 1.1e-20 105.5 70 72.9
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 1.4e-20 105.1 78 61.5
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 1.8e-20 104.8 79 63.3
CAN.G625.40 Capsicum annuum HOM05D005674 ORTHO05D007015 2.4e-20 104.4 79 63.3
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 2.4e-20 104.4 79 63.3
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 4.1e-20 103.6 83 57.8
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 9.1e-20 102.4 85 58.8
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 1.2e-19 102.1 73 67.1
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 1.2e-19 102.1 82 61.0
Hund00863 Selenicereus undatus HOM05D005674 ORTHO05D007015 1.2e-19 102.1 78 61.5
Medtr7g024140 Medicago truncatula HOM05D005674 ORTHO05D007015 1.6e-19 101.7 79 62.0
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 1.6e-19 101.7 70 72.9
TWI31G0445 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 2.7e-19 100.9 81 64.2
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 4.5e-19 100.1 78 62.8
CsaV3_5G005440 Cucumis sativus L. HOM05D005674 ORTHO05D007015 4.5e-19 100.1 78 62.8
Nitab4.5_0007923g0040 Nicotiana tabacum HOM05D005674 ORTHO05D007015 4.5e-19 100.1 83 55.4
HanXRQChr13g0421081 Helianthus annuus HOM05D005674 ORTHO05D007015 5.9e-19 99.8 77 62.3
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 7.7e-19 99.4 79 60.8
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 1.0e-18 99.0 81 59.3
TPR.G14745 Trifolium pratense HOM05D005674 ORTHO05D007015 1.0e-18 99.0 84 58.3
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 1.3e-18 98.6 80 60.0
TPR.G15161 Trifolium pratense HOM05D005674 ORTHO05D007015 1.3e-18 98.6 86 58.1
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 2.3e-18 97.8 70 67.1
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 2.9e-18 97.4 67 67.2
CAN.G1360.17 Capsicum annuum HOM05D001556 ORTHO05D001505 3.8e-18 97.1 61 68.9
Nitab4.5_0000249g0090 Nicotiana tabacum HOM05D005674 ORTHO05D007015 3.8e-18 97.1 78 57.7
SalBow4G2062 Salvia bowleyana HOM05D005674 ORTHO05D007015 3.8e-18 97.1 70 65.7
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 6.6e-18 96.3 73 61.6
Eucgr.K01145 Eucalyptus grandis HOM05D005674 ORTHO05D007015 8.6e-18 95.9 70 68.6
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 8.6e-18 95.9 78 59.0
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 1.5e-17 95.1 78 59.0
MELO3C020050.2 Cucumis melo HOM05D005674 ORTHO05D007015 1.9e-17 94.7 70 65.7
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 5.5e-17 93.2 72 61.1
Cc05_g08520 Coffea canephora HOM05D005674 ORTHO05D007015 5.5e-17 93.2 82 52.4
MBI15_g37633_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D000178 5.5e-17 93.2 79 57.0
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 7.2e-17 92.8 74 62.2
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 7.2e-17 92.8 74 62.2
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 1.2e-16 92.0 77 61.0
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 1.6e-16 91.7 68 61.8
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 2.8e-16 90.9 66 66.7
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 3.6e-16 90.5 77 59.7
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 6.1e-16 89.7 74 59.5
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 1.0e-15 89.0 67 64.2
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 1.4e-15 88.6 69 62.3
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 1.4e-15 88.6 77 59.7
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 1.4e-15 88.6 71 60.6
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 2.3e-15 87.8 77 58.4
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 3.0e-15 87.4 77 57.1
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 3.0e-15 87.4 70 60.0
Nitab4.5_0000753g0050 Nicotiana tabacum HOM05D005674 ORTHO05D007015 3.0e-15 87.4 78 55.1
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 4.0e-15 87.0 67 58.2
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 4.0e-15 87.0 67 58.2
PSO063G6562 Papaver somniferum HOM05D005674 ORTHO05D007015 4.0e-15 87.0 70 60.0
PSO782G5737 Papaver somniferum HOM05D005674 ORTHO05D007015 4.0e-15 87.0 80 53.8
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 4.0e-15 87.0 80 51.2
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 5.2e-15 86.7 67 59.7
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 5.2e-15 86.7 77 58.4
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 6.8e-15 86.3 77 55.8
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 1.2e-14 85.5 76 56.6
Nn2g12528 Nelumbo nucifera HOM05D005674 ORTHO05D007015 1.2e-14 85.5 78 56.4
COL.COLO4_33609 Corchorus olitorius HOM05D005674 ORTHO05D007015 2.0e-14 84.7 78 53.8
Peaxi162Scf00888g00007 Petunia axillaris HOM05D005674 ORTHO05D007015 2.6e-14 84.3 82 50.0
HPP92_017208 Vanilla planifolia HOM05D005674 ORTHO05D007015 9.8e-14 82.4 66 53.0
Aqoxy3G02039 Aquilegia oxysepala HOM05D005674 ORTHO05D007015 1.7e-13 81.6 67 58.2
TAR626G0412 Trochodendron aralioides HOM05D005674 ORTHO05D007015 1.7e-13 81.6 79 57.0
Nitab4.5_0007990g0010 Nicotiana tabacum HOM05D005674 ORTHO05D007015 2.8e-13 80.9 74 54.1
ATR1132G073 Amborella trichopoda HOM05D005674 ORTHO05D007015 6.3e-13 79.7 48 79.2
Os02g0793200 Oryza sativa ssp. japonica HOM05D005674 ORTHO05D007015 1.2e-11 75.5 75 48.0
Psat5g177920 Pisum sativum HOM05D005674 ORTHO05D007015 1.2e-11 75.5 53 64.2
CsaV3_5G013070 Cucumis sativus L. HOM05D005674 ORTHO05D007015 4.5e-11 73.6 53 62.3
CsaV3_UNG017130 Cucumis sativus L. HOM05D005674 ORTHO05D007015 4.5e-11 73.6 53 62.3
Zm00001eb201010 Zea mays HOM05D005674 ORTHO05D007015 7.8e-11 72.8 72 47.2
FAN23G2012 Fragaria x ananassa HOM05D005674 ORTHO05D007015 2.3e-10 71.2 47 72.3
MELO3C033079.2 Cucumis melo HOM05D005674 ORTHO05D031076 6.6e-10 69.7 47 70.2
BcaC06g31458 Brassica carinata HOM05D005674 ORTHO05D007015 1.5e-09 68.6 79 45.6
CAN.G1034.39 Capsicum annuum HOM05D005674 ORTHO05D033540 1.6e-08 65.1 46 60.9
Lalb_Chr01g0013691 Lupinus albus HOM05D001514 ORTHO05D007015 3.1e-07 60.8 44 65.9
Aqoxy5G02826 Aquilegia oxysepala HOM05D000017 ORTHO05D000013 5.2e-07 60.1 54 48.1


User provided reference genes

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