Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 1.7e-42 175.6 89 100.0
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 1.1e-33 146.4 81 91.4
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 3.1e-33 144.8 81 91.4
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 5.3e-33 144.1 81 90.1
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 5.3e-33 144.1 81 88.9
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 7.0e-33 143.7 81 90.1
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 7.0e-33 143.7 81 88.9
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 7.0e-33 143.7 81 90.1
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 7.0e-33 143.7 81 90.1
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 7.0e-33 143.7 81 88.9
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 7.0e-33 143.7 81 90.1
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 9.1e-33 143.3 81 90.1
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 9.1e-33 143.3 81 88.9
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 9.1e-33 143.3 81 88.9
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.2e-32 142.9 81 87.7
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.2e-32 142.9 81 87.7
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 1.2e-32 142.9 81 88.9
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 1.2e-32 142.9 81 90.1
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 1.2e-32 142.9 81 88.9
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 1.2e-32 142.9 81 88.9
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 1.2e-32 142.9 81 88.9
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 1.6e-32 142.5 81 88.9
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 1.6e-32 142.5 81 88.9
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 1.6e-32 142.5 81 88.9
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 1.6e-32 142.5 81 87.7
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 1.6e-32 142.5 81 87.7
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 1.6e-32 142.5 81 88.9
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 1.6e-32 142.5 80 88.8
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 2.0e-32 142.1 81 88.9
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.0e-32 142.1 81 87.7
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 2.0e-32 142.1 81 87.7
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 2.0e-32 142.1 81 88.9
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 2.0e-32 142.1 81 88.9
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 2.0e-32 142.1 81 88.9
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 2.0e-32 142.1 81 88.9
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 2.6e-32 141.7 81 87.7
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 2.6e-32 141.7 81 87.7
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 3.5e-32 141.4 81 88.9
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 3.5e-32 141.4 81 87.7
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 3.5e-32 141.4 81 88.9
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 3.5e-32 141.4 81 88.9
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 3.5e-32 141.4 81 88.9
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 3.5e-32 141.4 81 86.4
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 3.5e-32 141.4 81 86.4
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 4.5e-32 141.0 81 87.7
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 4.5e-32 141.0 81 88.9
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 4.5e-32 141.0 81 86.4
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 4.5e-32 141.0 81 88.9
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 4.5e-32 141.0 73 93.2
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 4.5e-32 141.0 81 86.4
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 5.9e-32 140.6 81 88.9
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 5.9e-32 140.6 81 87.7
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 5.9e-32 140.6 81 87.7
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 7.7e-32 140.2 81 88.9
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 7.7e-32 140.2 81 87.7
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 7.7e-32 140.2 81 86.4
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 1.0e-31 139.8 81 86.4
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 1.0e-31 139.8 81 87.7
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.0e-31 139.8 81 85.2
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 1.0e-31 139.8 81 87.7
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 1.0e-31 139.8 81 82.7
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.0e-31 139.8 81 86.4
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 1.3e-31 139.4 74 93.2
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 1.3e-31 139.4 81 86.4
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 1.3e-31 139.4 81 86.4
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 1.3e-31 139.4 81 86.4
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 1.7e-31 139.0 72 93.1
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 2.2e-31 138.7 81 86.4
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 2.2e-31 138.7 81 86.4
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 2.2e-31 138.7 81 87.7
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 2.9e-31 138.3 81 85.2
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 2.9e-31 138.3 81 85.2
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 2.9e-31 138.3 81 85.2
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 2.9e-31 138.3 81 86.4
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 2.9e-31 138.3 81 86.4
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 2.9e-31 138.3 81 85.2
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 2.9e-31 138.3 81 86.4
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 3.8e-31 137.9 81 86.4
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 3.8e-31 137.9 81 86.4
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 3.8e-31 137.9 81 86.4
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 3.8e-31 137.9 81 86.4
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 3.8e-31 137.9 81 86.4
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 3.8e-31 137.9 81 86.4
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 3.8e-31 137.9 81 85.2
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 3.8e-31 137.9 81 85.2
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 3.8e-31 137.9 81 85.2
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 3.8e-31 137.9 81 84.0
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 3.8e-31 137.9 81 87.7
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 3.8e-31 137.9 81 86.4
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 3.8e-31 137.9 81 86.4
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 3.8e-31 137.9 81 85.2
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 5.0e-31 137.5 81 85.2
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 5.0e-31 137.5 82 86.6
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 6.5e-31 137.1 81 85.2
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 8.5e-31 136.7 81 85.2
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 8.5e-31 136.7 81 85.2
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 8.5e-31 136.7 81 85.2
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 8.5e-31 136.7 81 85.2
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 8.5e-31 136.7 81 87.7
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 8.5e-31 136.7 81 84.0
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 8.5e-31 136.7 81 86.4
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.1e-30 136.3 81 85.2
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.1e-30 136.3 81 85.2
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 1.1e-30 136.3 81 85.2
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 1.1e-30 136.3 81 85.2
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 1.1e-30 136.3 81 85.2
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 1.1e-30 136.3 81 85.2
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 1.1e-30 136.3 81 85.2
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 1.1e-30 136.3 81 85.2
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 1.1e-30 136.3 81 84.0
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 1.1e-30 136.3 81 85.2
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 1.1e-30 136.3 81 85.2
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 1.1e-30 136.3 81 85.2
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 1.1e-30 136.3 73 89.0
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 1.5e-30 136.0 74 90.5
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 1.5e-30 136.0 81 84.0
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 1.5e-30 136.0 81 85.2
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 1.5e-30 136.0 81 85.2
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 1.5e-30 136.0 81 84.0
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 1.9e-30 135.6 81 84.0
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 1.9e-30 135.6 81 81.5
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 2.5e-30 135.2 81 82.7
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 3.2e-30 134.8 81 84.0
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 4.2e-30 134.4 81 81.5
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 5.5e-30 134.0 81 81.5
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 9.4e-30 133.3 81 82.7
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 1.6e-29 132.5 85 80.0
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 2.7e-29 131.7 81 81.5
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 8.0e-29 130.2 73 89.0
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 8.0e-29 130.2 81 80.2
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 1.4e-28 129.4 81 82.7
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 1.4e-28 129.4 81 77.8
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 2.3e-28 128.6 73 86.3
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 2.3e-28 128.6 67 92.5
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 6.7e-28 127.1 91 76.9
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 3.3e-27 124.8 77 80.5
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 3.1e-25 118.2 74 78.4
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 4.1e-25 117.9 71 77.5
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 1.6e-24 115.9 72 79.2
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 1.6e-24 115.9 72 79.2
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.0e-20 103.2 85 69.4
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 8.8e-20 100.1 165 41.8
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 3.4e-19 98.2 73 61.6
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 1.3e-15 86.3 54 79.6
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 2.3e-15 85.5 53 81.1
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 2.3e-15 85.5 54 77.8
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 3.8e-15 84.7 53 79.2
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 5.0e-15 84.3 67 67.2
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 6.6e-15 84.0 51 80.4
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 2.8e-13 78.6 53 73.6
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 3.6e-13 78.2 74 62.2
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 6.1e-13 77.4 51 74.5
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 1.9e-06 55.8 48 62.5
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 3.3e-06 55.1 38 76.3
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 4.3e-06 54.7 38 76.3
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 7.3e-06 53.9 38 71.1


User provided reference genes

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