Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 1.6e-258 895.6 454 100.0
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 8.6e-204 713.8 463 78.4
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 4.7e-194 681.4 393 85.5
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 1.2e-192 676.8 465 78.7
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 2.8e-186 655.6 460 73.0
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 8.1e-186 654.1 459 71.7
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 4.4e-184 648.3 462 72.3
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.7e-183 646.4 459 72.3
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 2.2e-183 646.0 462 72.9
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 8.4e-183 644.0 459 72.5
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 1.9e-182 642.9 459 72.5
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 7.1e-182 641.0 456 71.1
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 9.3e-182 640.6 463 71.7
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 4.6e-181 638.3 457 70.2
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.9e-179 632.9 475 69.9
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 1.6e-178 629.8 394 78.2
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 1.6e-178 629.8 466 69.3
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 2.1e-178 629.4 461 69.6
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 4.5e-176 621.7 468 67.3
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 2.2e-175 619.4 457 66.7
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 4.9e-175 618.2 463 69.8
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 9.3e-174 614.0 545 60.2
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 4.6e-173 611.7 494 65.2
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 5.1e-172 608.2 370 78.6
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 5.1e-172 608.2 471 67.3
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 1.6e-170 603.2 453 67.8
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.1e-169 600.5 398 71.9
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 1.1e-169 600.5 402 72.1
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 1.1e-169 600.5 468 64.7
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 4.0e-169 598.6 454 68.3
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 1.3e-167 593.6 390 73.3
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 3.8e-167 592.0 423 68.8
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 4.9e-167 591.7 393 74.0
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 6.4e-167 591.3 485 64.1
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 6.4e-167 591.3 398 72.1
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 6.4e-167 591.3 393 74.0
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 8.4e-167 590.9 456 67.8
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 8.4e-167 590.9 464 67.9
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 8.4e-167 590.9 388 72.9
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 1.1e-166 590.5 455 67.9
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 1.9e-166 589.7 465 65.2
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 1.9e-166 589.7 366 76.5
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 3.2e-166 589.0 366 75.4
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 9.3e-166 587.4 457 66.3
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 1.6e-165 586.6 454 66.5
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 1.6e-165 586.6 469 64.8
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 4.6e-165 585.1 456 64.3
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 4.6e-165 585.1 499 61.9
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 1.0e-164 583.9 459 66.4
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 2.3e-164 582.8 406 67.7
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 2.3e-164 582.8 452 65.5
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 3.0e-164 582.4 400 68.8
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 3.0e-164 582.4 456 64.0
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 5.1e-164 581.6 469 63.5
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 6.7e-164 581.3 365 75.6
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 6.7e-164 581.3 457 63.2
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 1.5e-163 580.1 492 61.4
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.9e-163 579.7 400 71.2
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 5.6e-163 578.2 451 63.0
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 7.4e-163 577.8 447 65.5
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 9.6e-163 577.4 366 74.0
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 1.6e-162 576.6 423 65.2
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 2.1e-162 576.2 454 62.6
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 2.1e-162 576.2 454 62.6
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 2.8e-162 575.9 400 71.0
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 3.7e-162 575.5 404 67.6
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 3.7e-162 575.5 452 63.3
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 4.8e-162 575.1 410 66.6
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 6.2e-162 574.7 380 72.1
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 8.2e-162 574.3 423 65.5
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 8.2e-162 574.3 447 65.3
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 1.4e-161 573.5 448 64.5
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 9.0e-161 570.9 475 63.8
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 1.2e-160 570.5 366 73.2
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 3.4e-160 568.9 454 62.6
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 4.5e-160 568.5 401 67.6
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 5.8e-160 568.2 400 66.5
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 1.3e-159 567.0 445 63.1
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 1.7e-159 566.6 395 68.4
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 1.7e-159 566.6 395 68.4
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 2.2e-159 566.2 409 66.5
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 4.9e-159 565.1 395 68.1
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 8.4e-159 564.3 356 75.3
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 1.9e-158 563.1 333 79.3
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 1.9e-158 563.1 482 60.2
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 2.7e-157 559.3 453 61.4
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 6.0e-157 558.1 399 66.4
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 7.9e-157 557.8 399 66.4
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 3.9e-156 555.4 450 61.8
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 5.1e-156 555.1 450 60.7
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 6.7e-156 554.7 583 53.9
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 4.3e-155 552.0 399 65.9
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 4.3e-155 552.0 399 65.9
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 6.9e-153 544.7 446 60.3
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 2.6e-152 542.7 475 58.7
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 2.6e-152 542.7 405 67.4
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 2.5e-150 536.2 329 78.1
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 4.2e-150 535.4 405 66.7
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 2.3e-148 529.6 362 68.8
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 3.3e-147 525.8 401 64.6
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 5.7e-147 525.0 344 72.4
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 5.7e-147 525.0 344 72.4
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 5.7e-147 525.0 373 69.4
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 7.4e-147 524.6 357 68.6
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 8.2e-146 521.2 357 68.1
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 3.1e-145 519.2 333 74.8
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 4.1e-145 518.8 427 61.4
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 5.3e-145 518.5 353 70.8
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 6.9e-145 518.1 489 59.1
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 4.5e-144 515.4 422 61.1
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 1.0e-143 514.2 386 65.5
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 7.2e-142 508.1 407 61.9
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.1e-137 494.2 415 64.8
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 1.5e-136 490.3 390 64.4
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 5.0e-135 485.3 435 57.2
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.4e-134 483.8 386 64.8
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 2.5e-134 483.0 318 70.1
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.1e-133 479.9 386 64.5
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 8.8e-132 474.6 293 75.4
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 3.5e-128 462.6 255 90.6
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 5.9e-128 461.8 382 55.5
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 4.2e-126 455.7 382 58.6
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 2.7e-125 453.0 300 71.3
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 8.8e-124 448.0 340 69.7
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 1.5e-123 447.2 365 54.8
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 4.4e-123 445.7 353 59.2
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 1.8e-121 440.3 353 62.6
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 2.6e-115 419.9 400 52.5
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 1.4e-113 414.1 382 55.2
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 4.2e-110 402.5 371 53.1
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 1.4e-108 397.5 248 74.2
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 1.5e-102 377.5 217 81.6
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 9.5e-102 374.8 259 68.3
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 1.6e-96 357.5 206 81.1
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 4.3e-78 296.2 411 38.7
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 5.2e-76 289.3 287 57.8
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 3.0e-63 246.9 334 41.6
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 1.9e-62 244.2 297 41.4
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 8.4e-50 202.2 176 59.7
Cpa.g.sc208.5 Carica papaya HOM05D004519 ORTHO05D006283 3.2e-41 173.7 205 48.8
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 6.3e-37 159.5 98 74.5
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 4.2e-33 146.7 85 76.5
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 4.5e-27 126.7 107 66.4
HanXRQChr16g0500211 Helianthus annuus HOM05D004519 ORTHO05D006283 9.4e-25 119.0 77 72.7
arahy.Tifrunner.gnm1.ann1.LG4SFI Arachis hypogaea HOM05D000755 ORTHO05D017477 7.0e-20 102.8 108 50.0
Actinidia01316 Actinidia chinensis HOM05D004519 ORTHO05D006283 5.9e-19 99.8 68 70.6
PGSC0003DMG401014796 Solanum tuberosum HOM05D004519 ORTHO05D006283 1.4e-17 95.1 93 50.5
Gohir.D13G135501 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.1e-16 91.3 55 78.2
Gohir.D08G117301 Gossypium hirsutum HOM05D004519 ORTHO05D017048 6.1e-16 89.7 55 76.4
Gohir.D11G228750 Gossypium hirsutum HOM05D004519 ORTHO05D017048 6.1e-16 89.7 55 76.4
Gohir.D11G251850 Gossypium hirsutum HOM05D004519 ORTHO05D017048 6.1e-16 89.7 55 76.4
Gorai.008G116000 Gossypium raimondii HOM05D004519 ORTHO05D017048 6.7e-15 86.3 53 75.5
RcHm_v2.0_Chr5g0062811 Rosa chinensis HOM05D004519 ORTHO05D017048 7.4e-14 82.8 53 69.8
COL.COLO4_16939 Corchorus olitorius HOM05D004519 ORTHO05D006283 2.8e-13 80.9 72 59.7
Actinidia29341 Actinidia chinensis HOM05D004519 ORTHO05D052920 2.1e-08 64.7 32 84.4
Gohir.D02G161780 Gossypium hirsutum HOM05D004519 ORTHO05D017048 1.5e-06 58.5 35 74.3
Gohir.D10G176966 Gossypium hirsutum HOM05D004519 ORTHO05D017048 1.5e-06 58.5 35 74.3
arahy.Tifrunner.gnm1.ann1.18EICQ Arachis hypogaea HOM05D000755 ORTHO05D017477 3.4e-06 57.4 59 49.2


User provided reference genes

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