Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012496 Carpinus fangiana HOM05D007702 ORTHO05D009736 1.0e-145 520.0 261 100.0
Haze_08173 Corylus avellana HOM05D007702 ORTHO05D009736 7.5e-136 487.3 260 95.0
CiPaw.11G097300 Carya illinoinensis HOM05D007702 ORTHO05D009736 3.8e-79 298.9 285 61.1
Manes.06G177600 Manihot esculenta HOM05D007702 ORTHO05D009736 8.8e-68 261.2 242 57.4
QL12p001257 Quercus lobata HOM05D007702 ORTHO05D009736 4.4e-67 258.8 214 65.9
Prupe.3G023000 Prunus persica HOM05D007702 ORTHO05D009736 1.0e-63 247.7 275 52.4
Thecc.06G057000 Theobroma cacao HOM05D007702 ORTHO05D009736 5.0e-63 245.4 273 55.3
MD09G1165300 Malus domestica HOM05D007702 ORTHO05D009736 1.4e-60 237.3 274 54.7
Duzib235G0870 Durio zibethinus HOM05D007702 ORTHO05D009736 3.0e-60 236.1 256 54.7
Gohir.A10G002000 Gossypium hirsutum HOM05D007702 ORTHO05D009736 1.1e-59 234.2 234 56.4
Gohir.D10G002100 Gossypium hirsutum HOM05D007702 ORTHO05D009736 1.1e-59 234.2 228 57.0
Gorai.011G002500 Gossypium raimondii HOM05D007702 ORTHO05D009736 7.5e-59 231.5 228 56.6
Sabra08G0002400 Salix brachista HOM05D007702 ORTHO05D009736 6.3e-58 228.4 250 54.0
Cpa.g.sc155.12 Carica papaya HOM05D007702 ORTHO05D009736 8.2e-58 228.0 265 50.2
Eucgr.J03180 Eucalyptus grandis HOM05D007702 ORTHO05D009736 4.1e-57 225.7 249 53.8
Sc12g0011180 Simmondsia chinensis HOM05D007715 ORTHO05D009760 1.6e-56 223.8 252 50.0
EL10Ac7g18156 Beta vulgaris HOM05D007702 ORTHO05D009736 2.0e-56 223.4 271 48.7
BraA06t23478Z Brassica rapa HOM05D007702 ORTHO05D009736 2.7e-56 223.0 238 54.2
Ciclev10032212m.g Citrus clementina HOM05D007702 ORTHO05D009736 2.7e-56 223.0 252 51.6
Potri.008G004800 Populus trichocarpa HOM05D007702 ORTHO05D009736 2.7e-56 223.0 269 51.3
AUR62001339 Chenopodium quinoa HOM05D007702 ORTHO05D009736 7.7e-56 221.5 273 49.5
Ah.08g217790 Amaranthus hybridus HOM05D007702 ORTHO05D009736 1.1e-54 217.6 227 50.7
AUR62025666 Chenopodium quinoa HOM05D007702 ORTHO05D009736 3.2e-54 216.1 264 48.9
A06p02690 Brassica napus HOM05D007702 ORTHO05D009736 4.2e-54 215.7 234 52.1
CSS0020400 Camellia sinensis var. sinensis HOM05D007702 ORTHO05D009736 4.2e-54 215.7 258 48.4
Solyc01g102860.2 Solanum lycopersicum HOM05D007702 ORTHO05D009736 5.5e-54 215.3 266 47.7
Sopen01g045260 Solanum pennellii HOM05D007702 ORTHO05D009736 1.2e-53 214.2 246 51.2
Cc03_g07590 Coffea canephora HOM05D007702 ORTHO05D009736 2.1e-53 213.4 237 52.3
BcaB07g33554 Brassica carinata HOM05D007702 ORTHO05D009736 2.7e-53 213.0 238 51.7
CANSAT54G1387 Cannabis sativa HOM05D007702 ORTHO05D009736 2.7e-53 213.0 334 42.2
Actinidia21887 Actinidia chinensis HOM05D007702 ORTHO05D009736 1.8e-52 210.3 259 46.7
CANSAT54G2309 Cannabis sativa HOM05D007702 ORTHO05D009736 1.8e-52 210.3 170 65.3
COL.COLO4_31154 Corchorus olitorius HOM05D007702 ORTHO05D009736 1.8e-52 210.3 222 55.9
BcaC08g43279 Brassica carinata HOM05D007702 ORTHO05D009736 2.3e-52 209.9 231 53.2
C06p06290 Brassica napus HOM05D007702 ORTHO05D009736 2.3e-52 209.9 231 53.2
BolC6t35738H Brassica oleracea HOM05D007702 ORTHO05D009736 2.3e-52 209.9 231 53.2
Aqoxy7G02739 Aquilegia oxysepala HOM05D007702 ORTHO05D009736 5.2e-52 208.8 223 53.4
TAR383G0542 Trochodendron aralioides HOM05D007702 ORTHO05D009736 2.0e-51 206.8 357 40.1
PGR042G2668 Punica granatum HOM05D007702 ORTHO05D009736 2.6e-51 206.5 273 47.6
PGSC0003DMG400018255 Solanum tuberosum HOM05D007702 ORTHO05D009736 4.8e-50 202.2 228 50.0
RcHm_v2.0_Chr2g0149381 Rosa chinensis HOM05D007702 ORTHO05D009736 6.3e-50 201.8 223 54.7
MBI07_g12934_MAGBIO Magnolia biondii HOM05D007702 ORTHO05D009736 1.4e-49 200.7 187 56.1
Nitab4.5_0010634g0010 Nicotiana tabacum HOM05D007702 ORTHO05D009736 1.8e-49 200.3 243 49.8
Thhalv10012117m.g Eutrema salsugineum HOM05D007702 ORTHO05D009736 4.1e-49 199.1 236 50.4
Peaxi162Scf00051g00198 Petunia axillaris HOM05D007702 ORTHO05D009736 4.1e-49 199.1 242 48.8
DCAR_007958 Daucus carota HOM05D007702 ORTHO05D009736 1.6e-48 197.2 235 47.7
FAN02G3529 Fragaria x ananassa HOM05D007715 ORTHO05D009760 2.0e-48 196.8 223 53.4
Ca_00991_v3 Cicer arietinum L. HOM05D007702 ORTHO05D009736 3.5e-48 196.1 127 73.2
Nn2g12749 Nelumbo nucifera HOM05D007702 ORTHO05D009736 5.9e-48 195.3 205 52.2
Aa31LG10G3400 Aethionema arabicum HOM05D007702 ORTHO05D009736 1.3e-47 194.1 224 50.4
Nitab4.5_0006053g0030 Nicotiana tabacum HOM05D007702 ORTHO05D009736 2.2e-47 193.4 231 49.4
CDE05G1247 Ceratophyllum demersum HOM05D007702 ORTHO05D009736 6.5e-47 191.8 276 44.6
Psat5g305320 Pisum sativum HOM05D007702 ORTHO05D009736 6.5e-47 191.8 220 49.5
Atru.chr1.2666 Acer truncatum HOM05D007702 ORTHO05D009736 8.5e-47 191.4 229 50.7
FAN05G4144 Fragaria x ananassa HOM05D007715 ORTHO05D009760 1.5e-46 190.7 224 51.3
FAN14G5785 Fragaria x ananassa HOM05D007715 ORTHO05D009760 1.5e-46 190.7 226 51.3
Carub.0001s3998 Capsella rubella HOM05D007702 ORTHO05D009736 3.2e-46 189.5 236 46.6
Medtr2g101430 Medicago truncatula HOM05D007702 ORTHO05D009736 5.5e-46 188.7 227 48.0
Sp1g37800 Schrenkiella parvula HOM05D007702 ORTHO05D009736 7.2e-46 188.3 243 46.5
arahy.Tifrunner.gnm1.ann1.TT2UX9 Arachis hypogaea HOM05D007702 ORTHO05D009736 1.2e-45 187.6 247 44.9
THA.LOC104817895 Tarenaya hassleriana HOM05D007702 ORTHO05D009736 1.6e-45 187.2 260 43.8
AT1G51080 Arabidopsis thaliana HOM05D007702 ORTHO05D009736 3.6e-45 186.0 236 47.9
FvH4_6g36940 Fragaria vesca HOM05D007702 ORTHO05D009736 3.6e-45 186.0 220 50.0
Migut.I01200 Erythranthe guttata HOM05D007702 ORTHO05D009736 6.1e-45 185.3 133 68.4
ClCG09G001650 Citrullus lanatus HOM05D007702 ORTHO05D009736 1.0e-44 184.5 217 52.1
TPR.G39495 Trifolium pratense HOM05D007702 ORTHO05D009736 2.3e-44 183.3 132 67.4
CsaV3_7G033690 Cucumis sativus L. HOM05D007702 ORTHO05D009736 6.8e-44 181.8 233 45.1
AL1G58880 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 8.8e-44 181.4 239 46.4
CARHR041100 Cardamine hirsuta HOM05D007702 ORTHO05D009736 8.8e-44 181.4 236 46.2
GSVIVG01029550001 Vitis vinifera HOM05D007702 ORTHO05D009736 2.6e-43 179.9 228 50.4
CAN.G2401.1 Capsicum annuum HOM05D000005 ORTHO05D000012 2.8e-42 176.4 159 56.6
MELO3C024282.2 Cucumis melo HOM05D007702 ORTHO05D009736 2.8e-42 176.4 132 64.4
unitig_748.g7485 Utricularia gibba HOM05D007702 ORTHO05D009736 2.8e-42 176.4 218 48.2
SGA_v2.0_scaffold71G23985 Striga asiatica HOM05D007702 ORTHO05D009736 3.5e-40 169.5 278 41.4
Oeu049633.1 Olea europaea HOM05D007702 ORTHO05D009736 1.7e-39 167.2 216 44.9
PSO423G0097 Papaver somniferum HOM05D007702 ORTHO05D009736 2.9e-39 166.4 235 47.2
PSO144G0036 Papaver somniferum HOM05D007702 ORTHO05D009736 3.8e-39 166.0 236 48.7
Lsat_1_v5_gn_1_39381 Lactuca sativa HOM05D007702 ORTHO05D009736 1.2e-35 154.5 183 49.2
Os03g0138900 Oryza sativa ssp. japonica HOM05D007702 ORTHO05D009736 3.4e-35 152.9 249 41.8
Aa31LG6G10000 Aethionema arabicum HOM05D007702 ORTHO05D009736 2.4e-33 146.7 129 55.0
Rhsim08G0250300 Rhododendron simsii HOM05D007702 ORTHO05D009736 3.2e-33 146.4 284 37.7
SalBow6G4959 Salvia bowleyana HOM05D007702 ORTHO05D009736 3.2e-33 146.4 121 62.0
Gorai.011G091300 Gossypium raimondii HOM05D007702 ORTHO05D009736 4.1e-33 146.0 221 43.0
ATR1126G014 Amborella trichopoda HOM05D007702 ORTHO05D009736 1.2e-32 144.4 271 36.9
vmacro18744 Vaccinium macrocarpon HOM05D007702 ORTHO05D009736 2.7e-32 143.3 143 49.0
ECA236G1927 Erigeron canadensis HOM05D007702 ORTHO05D009736 5.9e-32 142.1 219 41.6
Mapoly0020s0094 Marchantia polymorpha HOM05D007702 ORTHO05D009736 5.2e-28 129.0 231 33.8
Pp3c5_18880 Physcomitrium patens HOM05D007702 ORTHO05D009736 1.5e-27 127.5 258 32.9
SEGI_14624 Sequoiadendron giganteum HOM05D007702 ORTHO05D009736 1.9e-25 120.6 229 34.5
FAN09G0474 Fragaria x ananassa HOM05D007715 ORTHO05D009760 3.2e-25 119.8 184 45.1
EL10Ac3g06847 Beta vulgaris HOM05D000495 ORTHO05D009736 3.0e-23 113.2 121 48.8
Aa31LG3G5120 Aethionema arabicum HOM05D007702 ORTHO05D009736 5.0e-23 112.5 153 45.1
Zm00001eb230260 Zea mays HOM05D007702 ORTHO05D009736 1.9e-22 110.5 244 34.4
AagrBONN_evm.TU.Sc2ySwM_228.5746 Anthoceros agrestis HOM05D007702 ORTHO05D009736 3.6e-21 106.3 226 33.6
FAN10G3703 Fragaria x ananassa HOM05D007702 ORTHO05D009736 8.6e-15 85.1 171 38.6
Dinv37777 Davidia involucrata HOM05D000532 ORTHO05D002745 2.5e-14 83.6 151 38.4
FAN02G1843 Fragaria x ananassa HOM05D007702 ORTHO05D009736 2.0e-11 73.9 149 39.6
FAN07G0391 Fragaria x ananassa HOM05D007702 ORTHO05D009736 3.8e-10 69.7 48 68.8
Actinidia21654 Actinidia chinensis HOM05D007715 ORTHO05D009760 6.4e-10 68.9 53 58.5
AL3G14490 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 1.0e-07 61.6 51 54.9


User provided reference genes

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