Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012487 Carpinus fangiana HOM05D007450 ORTHO05D009377 3.6e-52 208.0 106 100.0
CiPaw.11G096800 Carya illinoinensis HOM05D007450 ORTHO05D009377 5.7e-42 174.1 107 85.0
Haze_08178 Corylus avellana HOM05D007450 ORTHO05D009377 1.3e-41 172.9 166 63.3
Psat2g138000 Pisum sativum HOM05D007450 ORTHO05D009377 5.2e-35 151.0 111 74.8
Medtr5g029660 Medicago truncatula HOM05D007450 ORTHO05D009377 6.8e-35 150.6 111 73.9
Manes.14G162800 Manihot esculenta HOM05D007450 ORTHO05D009377 9.8e-34 146.7 104 76.9
FAN08G0787 Fragaria x ananassa HOM05D007450 ORTHO05D009377 9.2e-32 140.2 113 68.1
FvH4_5g22750 Fragaria vesca HOM05D007450 ORTHO05D009377 1.2e-31 139.8 113 68.1
FAN18G1197 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.2e-31 139.8 113 68.1
FAN18G1518 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.2e-31 139.8 113 68.1
Lj2g0017142 Lotus japonicus HOM05D007450 ORTHO05D009377 1.2e-31 139.8 110 72.7
Gohir.A12G207000 Gossypium hirsutum HOM05D007450 ORTHO05D009377 7.8e-31 137.1 111 72.1
FAN04G2147 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.0e-30 136.7 113 67.3
TAR629G3037 Trochodendron aralioides HOM05D007450 ORTHO05D009377 2.3e-30 135.6 114 65.8
FAN13G0277 Fragaria x ananassa HOM05D007450 ORTHO05D009377 3.0e-30 135.2 113 66.4
FAN13G1033 Fragaria x ananassa HOM05D007450 ORTHO05D009377 3.0e-30 135.2 113 66.4
Ca_08150_v3 Cicer arietinum L. HOM05D007450 ORTHO05D009377 3.9e-30 134.8 110 69.1
RcHm_v2.0_Chr7g0211351 Rosa chinensis HOM05D007450 ORTHO05D009377 3.9e-30 134.8 113 66.4
Glyma.09G206700 Glycine max HOM05D007450 ORTHO05D009377 8.6e-30 133.7 112 66.1
Potri.001G138700 Populus trichocarpa HOM05D007450 ORTHO05D009377 1.9e-29 132.5 110 70.0
Duzib205G1651 Durio zibethinus HOM05D007450 ORTHO05D009377 2.5e-29 132.1 107 67.3
Prupe.5G030900 Prunus persica HOM05D007450 ORTHO05D009377 2.5e-29 132.1 112 67.0
GSVIVG01013568001 Vitis vinifera HOM05D007450 ORTHO05D009377 2.5e-29 132.1 88 77.3
Glyma.01G015700 Glycine max HOM05D007450 ORTHO05D009377 3.3e-29 131.7 112 65.2
Dinv25243 Davidia involucrata HOM05D007450 ORTHO05D009377 1.6e-28 129.4 105 69.5
Thecc.03G307400 Theobroma cacao HOM05D007450 ORTHO05D009377 1.6e-28 129.4 85 77.6
Rhsim07G0130700 Rhododendron simsii HOM05D007450 ORTHO05D009377 2.1e-28 129.0 105 67.6
TPR.G8094 Trifolium pratense HOM05D007450 ORTHO05D009377 2.1e-28 129.0 114 67.5
CSS0005314 Camellia sinensis var. sinensis HOM05D007450 ORTHO05D009377 2.8e-28 128.6 105 67.6
THA.LOC104798592 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 2.8e-28 128.6 94 70.2
PGR031G1038 Punica granatum HOM05D007450 ORTHO05D009377 1.0e-27 126.7 107 65.4
Ciclev10018330m.g Citrus clementina HOM05D007450 ORTHO05D009377 1.8e-27 125.9 84 77.4
THA.LOC104808475 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 1.8e-27 125.9 94 68.1
Sabra01G0107700 Salix brachista HOM05D007450 ORTHO05D009377 6.8e-27 124.0 90 75.6
Gohir.D12G209400 Gossypium hirsutum HOM05D007450 ORTHO05D009377 8.9e-27 123.6 111 66.7
CANSAT21G1074 Cannabis sativa HOM05D007450 ORTHO05D009377 1.5e-26 122.9 106 64.2
Actinidia09178 Actinidia chinensis HOM05D007450 ORTHO05D009377 2.6e-26 122.1 101 65.3
Dinv28985 Davidia involucrata HOM05D007450 ORTHO05D009377 2.6e-26 122.1 85 76.5
QL12p004405 Quercus lobata HOM05D007450 ORTHO05D009377 2.6e-26 122.1 94 77.7
Sed0022287 Sechium edule HOM05D007450 ORTHO05D009377 2.6e-26 122.1 94 66.0
MELO3C003430.2 Cucumis melo HOM05D007450 ORTHO05D009377 4.4e-26 121.3 97 63.9
Thhalv10009436m.g Eutrema salsugineum HOM05D007450 ORTHO05D009377 7.5e-26 120.6 94 63.8
ECA233G1068 Erigeron canadensis HOM05D007450 ORTHO05D009377 9.8e-26 120.2 103 60.2
Lsat_1_v5_gn_6_1640 Lactuca sativa HOM05D007450 ORTHO05D009377 9.8e-26 120.2 103 60.2
Atru.chr6.1639 Acer truncatum HOM05D007450 ORTHO05D009377 1.7e-25 119.4 112 61.6
AT1G32310 Arabidopsis thaliana HOM05D007450 ORTHO05D009377 2.2e-25 119.0 100 62.0
Actinidia14787 Actinidia chinensis HOM05D007450 ORTHO05D009377 2.9e-25 118.6 104 63.5
Carub.0001s3064 Capsella rubella HOM05D007450 ORTHO05D009377 4.9e-25 117.9 94 63.8
Sp1g27980 Schrenkiella parvula HOM05D007450 ORTHO05D009377 4.9e-25 117.9 94 64.9
Lalb_Chr05g0215841 Lupinus albus HOM05D007450 ORTHO05D009377 2.4e-24 115.5 88 69.3
ClCG09G011730 Citrullus lanatus HOM05D007450 ORTHO05D009377 4.1e-24 114.8 96 59.4
Cc08_g03220 Coffea canephora HOM05D007450 ORTHO05D009377 5.4e-24 114.4 88 69.3
CARHR031660 Cardamine hirsuta HOM05D007450 ORTHO05D009377 7.0e-24 114.0 94 61.7
MD06G1038000 Malus domestica HOM05D007450 ORTHO05D009377 7.0e-24 114.0 112 58.0
Eucgr.E00251 Eucalyptus grandis HOM05D007450 ORTHO05D009377 9.2e-24 113.6 93 63.4
Aa31LG2G13720 Aethionema arabicum HOM05D007450 ORTHO05D009377 1.2e-23 113.2 94 61.7
Sed0003049 Sechium edule HOM05D007450 ORTHO05D009377 1.6e-23 112.8 100 59.0
Peaxi162Scf00170g01010 Petunia axillaris HOM05D007450 ORTHO05D009377 2.0e-23 112.5 104 60.6
arahy.Tifrunner.gnm1.ann1.UE78BX Arachis hypogaea HOM05D007450 ORTHO05D009377 2.7e-23 112.1 102 59.8
arahy.Tifrunner.gnm1.ann1.XXZI65 Arachis hypogaea HOM05D007450 ORTHO05D009377 2.7e-23 112.1 102 59.8
Nitab4.5_0000353g0070 Nicotiana tabacum HOM05D007450 ORTHO05D009377 3.5e-23 111.7 91 63.7
Nitab4.5_0000685g0040 Nicotiana tabacum HOM05D007450 ORTHO05D009377 3.5e-23 111.7 100 58.0
vmacro14189 Vaccinium macrocarpon HOM05D007450 ORTHO05D009377 4.6e-23 111.3 85 69.4
BcaC05g27880 Brassica carinata HOM05D007450 ORTHO05D009377 6.0e-23 110.9 93 61.3
Peaxi162Scf00879g00221 Petunia axillaris HOM05D007450 ORTHO05D009377 6.0e-23 110.9 91 62.6
DCAR_008242 Daucus carota HOM05D007450 ORTHO05D009377 7.8e-23 110.5 85 70.6
Peaxi162Scf00170g00915 Petunia axillaris HOM05D007450 ORTHO05D009377 7.8e-23 110.5 105 57.1
Phvul.002G138300 Phaseolus vulgaris HOM05D007450 ORTHO05D009377 7.8e-23 110.5 112 58.0
VMungo1215G2816 Vigna mungo HOM05D007450 ORTHO05D009377 1.3e-22 109.8 90 67.8
A05p25040 Brassica napus HOM05D007450 ORTHO05D009377 1.7e-22 109.4 93 60.2
CAN.G298.58 Capsicum annuum HOM05D007450 ORTHO05D009377 1.7e-22 109.4 102 58.8
Gorai.008G225000 Gossypium raimondii HOM05D007450 ORTHO05D009377 1.7e-22 109.4 89 70.8
BraA05t21386Z Brassica rapa HOM05D007450 ORTHO05D009377 3.9e-22 108.2 96 59.4
Solyc08g076580.3 Solanum lycopersicum HOM05D007450 ORTHO05D009377 3.9e-22 108.2 102 57.8
BcaB03g13745 Brassica carinata HOM05D007450 ORTHO05D009377 1.5e-21 106.3 93 59.1
C05p38880 Brassica napus HOM05D007450 ORTHO05D009377 1.5e-21 106.3 94 60.6
BolC5t32629H Brassica oleracea HOM05D007450 ORTHO05D009377 1.5e-21 106.3 94 60.6
Sopen08g025140 Solanum pennellii HOM05D007450 ORTHO05D009377 4.3e-21 104.8 86 62.8
PGSC0003DMG400014800 Solanum tuberosum HOM05D007450 ORTHO05D009377 7.3e-21 104.0 86 61.6
HanXRQChr13g0395471 Helianthus annuus HOM05D007450 ORTHO05D009377 1.2e-20 103.2 90 62.2
PSO063G4138 Papaver somniferum HOM05D007450 ORTHO05D009377 2.8e-20 102.1 116 55.2
PSO782G2764 Papaver somniferum HOM05D007450 ORTHO05D009377 6.2e-20 100.9 116 54.3
Potri.003G095100 Populus trichocarpa HOM05D007450 ORTHO05D009377 8.1e-20 100.5 90 63.3
Aqoxy3G02217 Aquilegia oxysepala HOM05D007450 ORTHO05D009377 5.2e-19 97.8 120 51.7
Lalb_Chr16g0381181 Lupinus albus HOM05D007450 ORTHO05D009377 1.2e-18 96.7 88 64.8
HPP92_001521 Vanilla planifolia HOM05D007450 ORTHO05D009377 1.7e-17 92.8 96 56.2
MSTRG.1994 Avicennia marina HOM05D007450 ORTHO05D009377 5.4e-16 87.8 72 63.9
Sc01g0007300 Simmondsia chinensis HOM05D007450 ORTHO05D009377 5.4e-16 87.8 134 43.3
ATR0829G039 Amborella trichopoda HOM05D007450 ORTHO05D009377 1.2e-15 86.7 91 57.1
SHI36446 Sapria himalayana HOM05D007450 ORTHO05D009377 2.1e-15 85.9 55 74.5
CDE11G0326 Ceratophyllum demersum HOM05D007450 ORTHO05D009377 7.8e-15 84.0 85 55.3
EL10Ac5g12043 Beta vulgaris HOM05D007450 ORTHO05D009377 1.9e-13 79.3 68 58.8
Hund11210 Selenicereus undatus HOM05D007450 ORTHO05D009377 2.5e-13 79.0 70 60.0
COL.COLO4_16968 Corchorus olitorius HOM05D007450 ORTHO05D009377 9.5e-13 77.0 52 76.9
SalBow1G6923 Salvia bowleyana HOM05D007450 ORTHO05D009377 2.8e-12 75.5 50 72.0
Zm00001eb024740 Zea mays HOM05D007450 ORTHO05D009377 1.4e-11 73.2 95 47.4
Migut.E00781 Erythranthe guttata HOM05D007450 ORTHO05D009377 5.2e-11 71.2 56 62.5
Os10g0575950 Oryza sativa ssp. japonica HOM05D007450 ORTHO05D009377 1.2e-10 70.1 90 45.6
AUR62018673 Chenopodium quinoa HOM05D007450 ORTHO05D009377 4.4e-10 68.2 86 46.5
CsaV3_3G048930 Cucumis sativus L. HOM05D007450 ORTHO05D009377 1.7e-09 66.2 41 73.2
CARHR033090 Cardamine hirsuta HOM05D007450 ORTHO05D009377 6.4e-09 64.3 43 67.4


User provided reference genes

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