Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 2.0e-110 402.9 278 100.0
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 4.6e-91 338.6 278 89.6
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 1.3e-48 197.6 201 59.7
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 3.7e-48 196.1 198 56.1
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 1.3e-45 187.6 220 55.0
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 5.2e-42 175.6 206 52.4
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 1.2e-41 174.5 216 54.6
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 4.8e-40 169.1 203 51.2
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.2e-38 164.5 197 50.8
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 2.7e-38 163.3 198 51.5
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.3e-37 161.0 197 49.7
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 1.7e-37 160.6 208 50.5
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 1.7e-37 160.6 197 48.2
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 3.8e-37 159.5 206 50.0
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 5.0e-37 159.1 197 49.7
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 1.9e-36 157.1 199 52.8
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 8.0e-35 151.8 206 47.1
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 1.0e-34 151.4 208 48.1
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 1.4e-34 151.0 200 51.5
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 1.4e-34 151.0 206 47.1
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 4.4e-33 146.0 205 45.9
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 8.3e-32 141.7 209 48.3
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 5.4e-31 139.0 199 45.7
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 5.4e-31 139.0 202 44.6
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 9.1e-31 138.3 205 42.9
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 2.0e-30 137.1 187 49.7
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 3.5e-30 136.3 208 46.6
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 3.5e-30 136.3 193 44.6
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 5.9e-30 135.6 190 47.4
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.0e-29 134.8 194 46.4
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 1.3e-29 134.4 211 46.9
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 2.3e-29 133.7 218 44.0
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 3.8e-29 132.9 219 44.3
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 5.0e-29 132.5 207 43.5
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 8.6e-29 131.7 205 43.4
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 4.2e-28 129.4 200 45.0
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 5.5e-28 129.0 200 43.5
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 5.5e-28 129.0 200 47.5
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 5.5e-28 129.0 225 41.8
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 9.5e-28 128.3 204 43.6
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 1.2e-27 127.9 212 45.3
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 2.1e-27 127.1 209 44.5
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 2.8e-27 126.7 224 43.8
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 3.6e-27 126.3 205 45.9
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 3.6e-27 126.3 224 42.9
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 6.1e-27 125.6 208 44.2
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 6.1e-27 125.6 224 43.3
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 1.0e-26 124.8 197 43.1
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 1.4e-26 124.4 210 45.2
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 1.8e-26 124.0 200 45.0
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 2.3e-26 123.6 203 43.3
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 3.0e-26 123.2 209 43.5
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 8.9e-26 121.7 211 44.1
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 4.4e-25 119.4 198 43.4
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 7.5e-25 118.6 194 45.4
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 9.8e-25 118.2 188 42.6
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 1.7e-24 117.5 188 42.6
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 1.4e-23 114.4 195 45.1
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 1.4e-23 114.4 195 45.1
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 3.2e-23 113.2 194 44.3
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 4.1e-23 112.8 190 43.2
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 4.1e-23 112.8 188 42.0
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 4.1e-23 112.8 201 44.8
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 9.2e-23 111.7 200 42.5
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 2.0e-22 110.5 200 43.0
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 2.0e-22 110.5 188 41.5
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 2.7e-22 110.2 188 41.5
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 4.5e-22 109.4 208 40.4
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 4.5e-22 109.4 218 39.9
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 5.9e-22 109.0 205 42.9
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 1.0e-21 108.2 192 41.1
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 1.0e-21 108.2 198 43.4
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 1.0e-21 108.2 204 42.6
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 1.7e-21 107.5 192 41.1
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 3.9e-21 106.3 211 39.8
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 5.0e-21 105.9 196 41.3
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 6.6e-21 105.5 192 41.1
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 3.3e-20 103.2 200 41.0
Phvul.002G140000 Phaseolus vulgaris HOM05D006310 ORTHO05D007768 3.3e-20 103.2 195 42.6
BcaC07g38109 Brassica carinata HOM05D006310 ORTHO05D007768 4.3e-20 102.8 185 41.6
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 4.3e-20 102.8 190 42.6
CDE11G1127 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 5.6e-20 102.4 210 37.6
Nn1g00145 Nelumbo nucifera HOM05D006310 ORTHO05D007768 9.5e-20 101.7 211 39.3
Aqoxy3G02279 Aquilegia oxysepala HOM05D006310 ORTHO05D007768 1.6e-19 100.9 218 35.8
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 6.1e-19 99.0 193 43.0
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 6.1e-19 99.0 197 41.1
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 6.1e-19 99.0 192 40.6
Aa31LG6G690 Aethionema arabicum HOM05D006310 ORTHO05D007768 1.0e-18 98.2 203 36.9
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 1.0e-18 98.2 205 40.5
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 1.8e-18 97.4 218 36.2
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 1.8e-18 97.4 200 40.5
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 2.3e-18 97.1 207 39.6
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 2.3e-18 97.1 76 63.2
CDE02G1298 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 4.0e-18 96.3 207 37.2
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 4.0e-18 96.3 193 39.4
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 5.2e-18 95.9 204 37.7
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 4.4e-17 92.8 195 41.0
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 2.2e-16 90.5 198 37.9
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 3.7e-16 89.7 196 38.3
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 4.9e-16 89.4 225 33.8
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 4.9e-16 89.4 193 38.3
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 1.9e-15 87.4 193 37.3
CDE06G1171 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 1.9e-15 87.4 198 34.8
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 3.2e-15 86.7 198 37.4
Peaxi162Scf00184g00001 Petunia axillaris HOM05D006310 ORTHO05D007768 4.6e-14 82.8 210 37.1
HanXRQChr17g0536151 Helianthus annuus HOM05D006310 ORTHO05D007768 3.9e-13 79.7 201 36.3
Lsat_1_v5_gn_7_107661 Lactuca sativa HOM05D001903 ORTHO05D001847 3.9e-13 79.7 197 35.0
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 5.0e-13 79.3 145 40.7
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 6.6e-13 79.0 205 36.6
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 4.3e-12 76.3 206 34.0
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 1.4e-10 71.2 199 31.2
HPP92_014659 Vanilla planifolia HOM05D006310 ORTHO05D007768 1.8e-10 70.9 179 33.0
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 6.8e-10 68.9 199 34.7
Hund14348 Selenicereus undatus HOM05D006310 ORTHO05D007768 4.4e-09 66.2 50 60.0
Ah.07g200600 Amaranthus hybridus HOM05D006310 ORTHO05D007768 9.8e-09 65.1 193 34.7
Ah.01g020680 Amaranthus hybridus HOM05D001903 ORTHO05D001847 1.4e-07 61.2 43 69.8
ATR1120G200 Amborella trichopoda HOM05D001903 ORTHO05D001847 2.4e-07 60.5 180 32.2
BcaB08g36543 Brassica carinata HOM05D001903 ORTHO05D001847 2.4e-07 60.5 198 31.8
CSS0008952 Camellia sinensis var. sinensis HOM05D001903 ORTHO05D001847 3.2e-07 60.1 134 38.1
A10p19730 Brassica napus HOM05D001903 ORTHO05D001847 5.4e-07 59.3 198 29.8
BraA10t44049Z Brassica rapa HOM05D001903 ORTHO05D001847 7.1e-07 58.9 195 30.3
Thhalv10014275m.g Eutrema salsugineum HOM05D001903 ORTHO05D001847 7.1e-07 58.9 209 31.1
HanXRQChr03g0062821 Helianthus annuus HOM05D001903 ORTHO05D001847 7.1e-07 58.9 196 29.6
Hund00522 Selenicereus undatus HOM05D001903 ORTHO05D001847 7.1e-07 58.9 120 38.3
SEGI_13914 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 7.1e-07 58.9 34 73.5
SEGI_03197 Sequoiadendron giganteum HOM05D006310 ORTHO05D007768 9.2e-07 58.5 58 48.3
THA.LOC104799641 Tarenaya hassleriana HOM05D001903 ORTHO05D001847 9.2e-07 58.5 215 30.2
TAR626G1723 Trochodendron aralioides HOM05D001903 ORTHO05D001847 9.2e-07 58.5 90 41.1
Actinidia15989 Actinidia chinensis HOM05D001903 ORTHO05D001847 1.2e-06 58.2 58 48.3
CsaV3_1G030300 Cucumis sativus L. HOM05D001903 ORTHO05D001847 1.2e-06 58.2 147 34.7
Aqoxy7G02202 Aquilegia oxysepala HOM05D001903 ORTHO05D001847 1.6e-06 57.8 58 48.3
Nn2g12060 Nelumbo nucifera HOM05D001903 ORTHO05D001847 1.6e-06 57.8 116 32.8
Eucgr.L02715 Eucalyptus grandis HOM05D001903 ORTHO05D001847 2.1e-06 57.4 65 46.2
Zm00001eb024820 Zea mays HOM05D006310 ORTHO05D007768 2.1e-06 57.4 37 64.9
Migut.D01072 Erythranthe guttata HOM05D001903 ORTHO05D001847 2.7e-06 57.0 58 48.3
Aqoxy3G02851 Aquilegia oxysepala HOM05D001903 ORTHO05D001847 3.5e-06 56.6 52 55.8
Aqoxy54s001 Aquilegia oxysepala HOM05D001903 ORTHO05D001847 3.5e-06 56.6 52 55.8
Aqoxy7G03684 Aquilegia oxysepala HOM05D001903 ORTHO05D001847 3.5e-06 56.6 52 55.8
MELO3C010333.2 Cucumis melo HOM05D001903 ORTHO05D001847 3.5e-06 56.6 146 32.2
Lsat_1_v5_gn_5_95540 Lactuca sativa HOM05D001903 ORTHO05D001847 3.5e-06 56.6 187 28.9
SEGI_10481 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 3.5e-06 56.6 71 42.3
arahy.Tifrunner.gnm1.ann1.C6FBGW Arachis hypogaea HOM05D001903 ORTHO05D001847 4.6e-06 56.2 207 28.0
arahy.Tifrunner.gnm1.ann1.T4Y60T Arachis hypogaea HOM05D001903 ORTHO05D001847 4.6e-06 56.2 207 28.0
Eucgr.F03869 Eucalyptus grandis HOM05D001903 ORTHO05D001847 4.6e-06 56.2 65 44.6
SEGI_10096 Sequoiadendron giganteum HOM05D001903 ORTHO05D001847 4.6e-06 56.2 105 39.0
Duzib150G0453 Durio zibethinus HOM05D001903 ORTHO05D001847 6.0e-06 55.8 198 30.3
Gohir.D13G205300 Gossypium hirsutum HOM05D001903 ORTHO05D001847 6.0e-06 55.8 140 34.3
Manes.04G113400 Manihot esculenta HOM05D001903 ORTHO05D001847 6.0e-06 55.8 95 37.9
BcaC08g47574 Brassica carinata HOM05D001903 ORTHO05D001847 7.8e-06 55.5 189 29.1
C06p54220 Brassica napus HOM05D001903 ORTHO05D001847 7.8e-06 55.5 189 29.1
CARHR192630 Cardamine hirsuta HOM05D001903 ORTHO05D001847 7.8e-06 55.5 204 29.4
TAR626G0355 Trochodendron aralioides HOM05D001903 ORTHO05D001847 7.8e-06 55.5 87 40.2


User provided reference genes

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