Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 5.9e-94 347.8 216 100.0
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 1.3e-77 293.5 216 88.0
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 8.6e-61 237.7 233 69.1
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 4.1e-55 218.8 227 71.4
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 1.0e-53 214.2 231 56.3
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 1.7e-53 213.4 233 53.2
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 3.0e-53 212.6 236 53.8
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 3.0e-53 212.6 236 53.8
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 1.1e-52 210.7 223 57.0
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 2.5e-52 209.5 226 54.4
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 3.3e-52 209.1 224 64.3
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 3.6e-51 205.7 225 54.7
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 3.6e-51 205.7 225 54.7
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 2.3e-50 203.0 231 55.0
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 3.4e-49 199.1 242 53.3
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 4.4e-49 198.7 222 57.7
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 5.8e-49 198.4 229 51.5
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 1.3e-48 197.2 229 50.7
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.7e-48 196.8 219 61.6
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.7e-48 196.8 219 61.6
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.8e-48 195.7 225 60.4
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 1.9e-47 193.4 227 51.5
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 4.1e-47 192.2 238 50.0
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 2.1e-46 189.9 230 56.1
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 2.1e-46 189.9 230 57.8
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 4.6e-46 188.7 217 53.5
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 1.7e-45 186.8 226 49.6
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 2.3e-45 186.4 225 50.7
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 3.9e-45 185.7 233 55.4
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 6.6e-45 184.9 218 50.5
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 1.5e-44 183.7 232 49.6
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 3.3e-44 182.6 225 50.2
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 4.3e-44 182.2 232 52.2
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 9.6e-44 181.0 223 57.8
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 1.2e-43 180.6 244 57.4
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 1.6e-43 180.3 232 49.6
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 2.8e-43 179.5 227 51.5
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 1.8e-42 176.8 232 49.1
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 3.1e-42 176.0 248 46.4
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 3.1e-42 176.0 237 48.9
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.0e-42 175.6 248 44.4
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 5.2e-42 175.3 225 49.8
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 1.5e-41 173.7 235 46.0
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.5e-41 173.7 235 46.0
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.5e-41 173.7 229 46.7
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 2.0e-41 173.3 236 53.0
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 2.0e-41 173.3 242 48.8
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 2.6e-41 172.9 232 53.4
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 4.4e-41 172.2 235 45.1
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.3e-40 170.6 235 44.7
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 2.9e-40 169.5 235 57.9
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 3.8e-40 169.1 229 47.2
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 8.4e-40 167.9 235 45.1
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 1.9e-39 166.8 216 52.8
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 1.9e-39 166.8 247 49.8
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.9e-39 166.8 245 45.3
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 2.4e-39 166.4 248 44.8
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 3.2e-39 166.0 223 48.9
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 5.4e-39 165.2 231 57.6
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 7.1e-39 164.9 225 50.7
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 7.1e-39 164.9 248 44.4
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 9.3e-39 164.5 236 53.0
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 2.7e-38 162.9 215 47.4
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.5e-38 162.5 229 47.6
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 4.6e-38 162.2 239 46.4
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 6.0e-38 161.8 219 47.5
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 7.8e-38 161.4 235 48.1
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 3.9e-37 159.1 234 56.0
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 8.7e-37 157.9 210 58.6
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 8.7e-37 157.9 230 46.1
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.5e-36 157.1 243 43.6
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 1.5e-36 157.1 217 47.0
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 2.5e-36 156.4 235 46.0
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 7.3e-36 154.8 230 45.7
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.3e-35 154.1 250 42.4
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.4e-34 149.8 151 56.3
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 5.3e-34 148.7 250 41.6
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 5.3e-34 148.7 224 46.0
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 9.0e-34 147.9 238 41.6
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 2.6e-33 146.4 216 41.7
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 3.4e-33 146.0 150 54.7
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 9.9e-33 144.4 228 45.2
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 9.9e-33 144.4 226 41.2
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 2.2e-32 143.3 226 38.1
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 4.9e-32 142.1 204 42.6
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 4.2e-31 139.0 227 41.4
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 9.3e-31 137.9 159 53.5
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 3.9e-29 132.5 221 38.9
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 6.7e-29 131.7 246 38.2
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 1.9e-28 130.2 230 42.6
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 2.5e-28 129.8 225 39.6
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 4.3e-28 129.0 234 36.8
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 4.3e-28 129.0 262 42.7
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 5.6e-28 128.6 196 44.9
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 2.1e-27 126.7 212 38.2
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 9.0e-26 121.3 230 33.9
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 1.2e-25 120.9 247 40.9
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 2.9e-24 116.3 220 37.3
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 6.4e-24 115.2 227 38.8
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 8.4e-24 114.8 228 36.0
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 1.1e-23 114.4 231 35.9
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 1.4e-23 114.0 224 37.5
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 4.2e-23 112.5 142 50.0
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 7.1e-23 111.7 234 37.2
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 7.1e-23 111.7 225 37.3
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 7.1e-23 111.7 213 34.7
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 2.7e-22 109.8 222 33.3
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 7.9e-22 108.2 213 36.6
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 7.9e-22 108.2 130 48.5
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 1.0e-21 107.8 213 34.3
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 1.8e-21 107.1 210 35.7
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 1.8e-21 107.1 221 35.7
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 1.8e-21 107.1 221 35.7
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 1.8e-21 107.1 249 41.4
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 2.3e-21 106.7 235 37.4
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 2.3e-21 106.7 139 42.4
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 3.0e-21 106.3 225 32.0
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 3.9e-21 105.9 208 36.1
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 3.9e-21 105.9 208 36.1
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 8.7e-21 104.8 225 31.6
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 8.7e-21 104.8 225 31.6
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 8.7e-21 104.8 147 45.6
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 1.1e-20 104.4 225 35.1
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 1.5e-20 104.0 217 34.1
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 1.9e-20 103.6 211 34.6
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 2.5e-20 103.2 208 38.5
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 7.4e-20 101.7 220 32.7
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 7.4e-20 101.7 220 32.7
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 7.4e-20 101.7 220 32.7
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.3e-19 100.9 231 31.6
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 1.6e-19 100.5 231 33.3
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 3.7e-19 99.4 206 34.5
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 4.8e-19 99.0 198 41.4
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 1.1e-18 97.8 205 34.1
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 3.1e-18 96.3 152 42.8
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.5e-17 94.0 210 32.9
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 2.0e-17 93.6 185 40.0
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 1.3e-16 90.9 188 40.4
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 2.2e-16 90.1 218 31.2
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 8.4e-16 88.2 202 35.6
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.1e-15 87.8 118 45.8
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 7.1e-15 85.1 115 42.6
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 7.1e-15 85.1 118 43.2
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 9.3e-15 84.7 151 40.4
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 1.6e-14 84.0 147 35.4
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 3.5e-14 82.8 227 32.6
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 2.8e-11 73.2 87 54.0
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 4.8e-11 72.4 132 37.1
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 1.2e-09 67.8 151 34.4
CDE02G3549 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 1.4e-07 60.8 147 30.6
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 1.4e-07 60.8 86 43.0
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 3.2e-07 59.7 88 50.0


User provided reference genes

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