Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012386 Carpinus fangiana HOM05D006197 ORTHO05D007718 1.2e-49 199.5 97 100.0
Haze_08298 Corylus avellana HOM05D006197 ORTHO05D007718 6.4e-48 193.7 97 96.9
CiPaw.11G087500 Carya illinoinensis HOM05D006197 ORTHO05D007718 1.4e-39 166.0 101 83.2
Prupe.5G046200 Prunus persica HOM05D006197 ORTHO05D007718 2.0e-33 145.6 97 74.2
PGR042G3581 Punica granatum HOM05D006197 ORTHO05D007718 2.0e-33 145.6 98 74.5
Eucgr.E00313 Eucalyptus grandis HOM05D006197 ORTHO05D007718 9.9e-33 143.3 98 72.4
MD16G1269400 Malus domestica HOM05D006197 ORTHO05D007718 4.9e-32 141.0 100 74.0
Cpa.g.sc6.409 Carica papaya HOM05D006197 ORTHO05D007718 6.4e-32 140.6 97 72.2
Manes.15G173000 Manihot esculenta HOM05D006197 ORTHO05D007718 1.4e-31 139.4 98 72.4
TWI81G0993 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 1.4e-31 139.4 99 74.7
FAN04G1051 Fragaria x ananassa HOM05D006197 ORTHO05D007718 2.4e-31 138.7 98 74.5
QL12p007107 Quercus lobata HOM05D006197 ORTHO05D007718 2.4e-31 138.7 105 69.5
GSVIVG01013230001 Vitis vinifera HOM05D006197 ORTHO05D007718 3.2e-31 138.3 100 71.0
Thecc.03G234100 Theobroma cacao HOM05D006197 ORTHO05D007718 1.6e-30 136.0 97 69.1
Cc00_g30230 Coffea canephora HOM05D006197 ORTHO05D007718 2.7e-30 135.2 103 69.9
Cc08_g01810 Coffea canephora HOM05D006197 ORTHO05D007718 2.7e-30 135.2 103 69.9
Hma1.2p1_0311F.1_g121310 Hydrangea macrophylla HOM05D006197 ORTHO05D007718 2.7e-30 135.2 101 68.3
Cc00_g23310 Coffea canephora HOM05D006197 ORTHO05D007718 3.5e-30 134.8 103 68.9
Duzib068G0126 Durio zibethinus HOM05D006197 ORTHO05D007718 3.5e-30 134.8 99 71.7
CSS0031892 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 4.6e-30 134.4 107 67.3
CSS0033989 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 4.6e-30 134.4 107 67.3
CSS0037645 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 4.6e-30 134.4 107 67.3
Gohir.A04G000300 Gossypium hirsutum HOM05D006197 ORTHO05D007718 4.6e-30 134.4 97 71.1
HanXRQChr08g0234831 Helianthus annuus HOM05D006197 ORTHO05D007718 4.6e-30 134.4 108 67.6
THA.LOC104819961 Tarenaya hassleriana HOM05D006197 ORTHO05D007718 4.6e-30 134.4 100 65.0
FAN13G1034 Fragaria x ananassa HOM05D006197 ORTHO05D007718 6.0e-30 134.0 95 73.7
Solyc08g077280.1 Solanum lycopersicum HOM05D006197 ORTHO05D007718 6.0e-30 134.0 106 67.0
Gohir.D08G180000 Gossypium hirsutum HOM05D006197 ORTHO05D007718 7.9e-30 133.7 98 72.4
Gorai.004G188500 Gossypium raimondii HOM05D006197 ORTHO05D007718 7.9e-30 133.7 98 72.4
SalBow1G7863 Salvia bowleyana HOM05D006197 ORTHO05D007718 7.9e-30 133.7 101 71.3
Potri.001G146700 Populus trichocarpa HOM05D006197 ORTHO05D007718 1.0e-29 133.3 100 68.0
FAN18G0540 Fragaria x ananassa HOM05D006197 ORTHO05D007718 1.3e-29 132.9 101 73.3
Gohir.A08G159600 Gossypium hirsutum HOM05D006197 ORTHO05D007718 1.3e-29 132.9 98 72.4
Nitab4.5_0002055g0120 Nicotiana tabacum HOM05D006197 ORTHO05D007718 1.3e-29 132.9 106 67.0
Ciclev10033154m.g Citrus clementina HOM05D006197 ORTHO05D007718 1.8e-29 132.5 103 68.9
Cc00_g26570 Coffea canephora HOM05D006197 ORTHO05D007718 1.8e-29 132.5 103 68.0
Peaxi162Scf00084g00099 Petunia axillaris HOM05D006197 ORTHO05D007718 1.8e-29 132.5 96 72.9
COL.COLO4_17110 Corchorus olitorius HOM05D006197 ORTHO05D007718 2.3e-29 132.1 97 69.1
Atru.chr6.1773 Acer truncatum HOM05D006197 ORTHO05D007718 3.0e-29 131.7 103 68.0
Duzib205G0278 Durio zibethinus HOM05D006197 ORTHO05D007718 3.0e-29 131.7 98 67.3
PGSC0003DMG400024214 Solanum tuberosum HOM05D006197 ORTHO05D007718 3.0e-29 131.7 105 69.5
AL5G41940 Arabidopsis lyrata HOM05D006197 ORTHO05D007718 3.9e-29 131.3 100 66.0
AT3G59840 Arabidopsis thaliana HOM05D006197 ORTHO05D007718 3.9e-29 131.3 100 66.0
Carub.0005s2656 Capsella rubella HOM05D006197 ORTHO05D007718 3.9e-29 131.3 100 66.0
Gorai.008G229000 Gossypium raimondii HOM05D006197 ORTHO05D007718 3.9e-29 131.3 98 67.3
Lj2g0021118 Lotus japonicus HOM05D006197 ORTHO05D007718 3.9e-29 131.3 101 69.3
Lsat_1_v5_gn_6_66400 Lactuca sativa HOM05D006197 ORTHO05D007718 5.1e-29 131.0 111 65.8
Nitab4.5_0006693g0020 Nicotiana tabacum HOM05D006197 ORTHO05D007718 5.1e-29 131.0 105 69.5
Sed0004723 Sechium edule HOM05D006197 ORTHO05D007718 5.1e-29 131.0 99 66.7
Sopen05g026900 Solanum pennellii HOM05D006197 ORTHO05D007718 5.1e-29 131.0 105 68.6
Sopen08g025860 Solanum pennellii HOM05D006197 ORTHO05D007718 5.1e-29 131.0 105 68.6
FAN08G0099 Fragaria x ananassa HOM05D006197 ORTHO05D007718 8.7e-29 130.2 101 71.3
MBI11_g07528_MAGBIO Magnolia biondii HOM05D006197 ORTHO05D007718 8.7e-29 130.2 101 63.4
Dinv28915 Davidia involucrata HOM05D006197 ORTHO05D007718 1.1e-28 129.8 102 66.7
Oeu014592.2 Olea europaea HOM05D006197 ORTHO05D007718 1.1e-28 129.8 103 65.0
Aa31LG10G14080 Aethionema arabicum HOM05D006197 ORTHO05D007718 1.5e-28 129.4 99 66.7
Thhalv10006335m.g Eutrema salsugineum HOM05D006197 ORTHO05D007718 1.5e-28 129.4 100 66.0
Sed0016057 Sechium edule HOM05D006197 ORTHO05D007718 1.5e-28 129.4 98 67.3
VMungo1215G1228 Vigna mungo HOM05D006197 ORTHO05D007718 1.5e-28 129.4 103 68.9
Sabra01G0115400 Salix brachista HOM05D006197 ORTHO05D007718 1.9e-28 129.0 100 67.0
A07p24860 Brassica napus HOM05D006197 ORTHO05D007718 2.5e-28 128.6 99 66.7
BraA07t30130Z Brassica rapa HOM05D006197 ORTHO05D007718 2.5e-28 128.6 99 66.7
ECA240G0414 Erigeron canadensis HOM05D006197 ORTHO05D007718 2.5e-28 128.6 106 67.9
BcaB02g07441 Brassica carinata HOM05D006197 ORTHO05D007718 3.3e-28 128.3 99 64.6
BcaC08g45013 Brassica carinata HOM05D006197 ORTHO05D007718 5.6e-28 127.5 97 64.9
BolC6t37808H Brassica oleracea HOM05D006197 ORTHO05D007718 5.6e-28 127.5 97 64.9
CARHR170180 Cardamine hirsuta HOM05D006197 ORTHO05D007718 5.6e-28 127.5 97 66.0
AUR62007231 Chenopodium quinoa HOM05D006197 ORTHO05D007718 5.6e-28 127.5 99 67.7
Dinv25183 Davidia involucrata HOM05D002285 ORTHO05D009255 5.6e-28 127.5 102 61.8
BcaC07g40556 Brassica carinata HOM05D006197 ORTHO05D007718 9.6e-28 126.7 100 65.0
A09p52120 Brassica napus HOM05D006197 ORTHO05D007718 9.6e-28 126.7 100 65.0
DCAR_008300 Daucus carota HOM05D006197 ORTHO05D007718 9.6e-28 126.7 100 68.0
Gohir.D12G213400 Gossypium hirsutum HOM05D006197 ORTHO05D007718 9.6e-28 126.7 98 65.3
MBI02_g29718_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009071 9.6e-28 126.7 100 63.0
Sp5g03300 Schrenkiella parvula HOM05D006197 ORTHO05D007718 9.6e-28 126.7 100 64.0
C06p26450 Brassica napus HOM05D006197 ORTHO05D007718 1.3e-27 126.3 97 63.9
CANSAT64G2368 Cannabis sativa HOM05D006197 ORTHO05D007718 1.3e-27 126.3 106 63.2
Medtr5g013975 Medicago truncatula HOM05D006197 ORTHO05D007718 1.3e-27 126.3 106 64.2
RcHm_v2.0_Chr7g0208331 Rosa chinensis HOM05D006197 ORTHO05D007718 2.1e-27 125.6 97 67.0
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 2.8e-27 125.2 94 67.0
BcaC07g40434 Brassica carinata HOM05D006197 ORTHO05D007718 2.8e-27 125.2 100 64.0
arahy.Tifrunner.gnm1.ann1.M9L3KI Arachis hypogaea HOM05D006197 ORTHO05D007718 3.7e-27 124.8 105 62.9
arahy.Tifrunner.gnm1.ann1.PC0NS4 Arachis hypogaea HOM05D006197 ORTHO05D007718 3.7e-27 124.8 105 62.9
CsaV3_3G049530 Cucumis sativus L. HOM05D006197 ORTHO05D007718 3.7e-27 124.8 100 63.0
Nn1g03717 Nelumbo nucifera HOM05D006197 ORTHO05D007718 3.7e-27 124.8 96 65.6
Glyma.11G041000 Glycine max HOM05D006197 ORTHO05D007718 4.8e-27 124.4 99 66.7
AUR62018769 Chenopodium quinoa HOM05D006197 ORTHO05D007718 6.2e-27 124.0 99 64.6
Oeu006551.1 Olea europaea HOM05D006197 ORTHO05D007718 6.2e-27 124.0 103 62.1
VMungo1215G3393 Vigna mungo HOM05D006197 ORTHO05D007718 6.2e-27 124.0 104 66.3
Glyma.01G201200 Glycine max HOM05D006197 ORTHO05D007718 8.1e-27 123.6 105 63.8
Phvul.002G004500 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 8.1e-27 123.6 101 66.3
Ca_24632_v3 Cicer arietinum L. HOM05D006197 ORTHO05D007718 1.8e-26 122.5 102 63.7
TWI15G0656 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 1.8e-26 122.5 100 68.0
PSO210G4997 Papaver somniferum HOM05D006197 ORTHO05D007718 2.4e-26 122.1 100 63.0
PSO832G1675 Papaver somniferum HOM05D006197 ORTHO05D007718 6.9e-26 120.6 100 62.0
Migut.N01790 Erythranthe guttata HOM05D006197 ORTHO05D007718 9.0e-26 120.2 105 63.8
Rhsim11G0011100 Rhododendron simsii HOM05D006197 ORTHO05D007718 1.5e-25 119.4 99 61.6
MELO3C003373.2 Cucumis melo HOM05D006197 ORTHO05D007718 2.6e-25 118.6 100 62.0
Cc00_g31810 Coffea canephora HOM05D006197 ORTHO05D007718 3.4e-25 118.2 92 69.6
Psat2g174760 Pisum sativum HOM05D006197 ORTHO05D007718 4.5e-25 117.9 103 61.2
Ah.12g053650 Amaranthus hybridus HOM05D006197 ORTHO05D007718 7.6e-25 117.1 100 62.0
Aqoxy1G03814 Aquilegia oxysepala HOM05D006197 ORTHO05D007718 9.9e-25 116.7 100 57.0
TAR624G0346 Trochodendron aralioides HOM05D006197 ORTHO05D007718 9.9e-25 116.7 97 59.8
ATR1088G052 Amborella trichopoda HOM05D006197 ORTHO05D007718 2.2e-24 115.5 106 61.3
unitig_747.g21291 Utricularia gibba HOM05D006197 ORTHO05D007718 1.1e-23 113.2 102 55.9
EL10Ac5g12195 Beta vulgaris HOM05D006197 ORTHO05D007718 5.5e-23 110.9 99 60.6
Phvul.002G003700 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 9.3e-23 110.2 101 62.4
Lalb_Chr09g0323941 Lupinus albus HOM05D006197 ORTHO05D007718 1.2e-22 109.8 119 52.9
Cc08_g02050 Coffea canephora HOM05D006197 ORTHO05D007718 1.6e-22 109.4 67 82.1
Cc08_g01990 Coffea canephora HOM05D006197 ORTHO05D007718 3.5e-22 108.2 67 80.6
BolC8t51081H Brassica oleracea HOM05D000403 ORTHO05D004426 6.0e-22 107.5 95 58.9
Cc08_g01910 Coffea canephora HOM05D006197 ORTHO05D007718 3.9e-21 104.8 97 58.8
Sc01g0007760 Simmondsia chinensis HOM05D006197 ORTHO05D007718 8.7e-21 103.6 79 67.1
Duzib084G1370 Durio zibethinus HOM05D006197 ORTHO05D007718 1.5e-20 102.8 98 58.2
Os05g0500450 Oryza sativa ssp. japonica HOM05D006197 ORTHO05D007718 3.3e-20 101.7 103 54.4
TPR.G6747 Trifolium pratense HOM05D006197 ORTHO05D007718 2.4e-18 95.5 62 74.2
Mapoly0127s0016 Marchantia polymorpha HOM05D006197 ORTHO05D007718 3.2e-15 85.1 69 52.2
AagrBONN_evm.TU.Sc2ySwM_368.296 Anthoceros agrestis HOM05D006197 ORTHO05D007718 5.5e-15 84.3 86 48.8
Eucgr.C01972 Eucalyptus grandis HOM05D006197 ORTHO05D007718 2.1e-14 82.4 68 54.4
CAN.G799.18 Capsicum annuum HOM05D006197 ORTHO05D007718 3.5e-14 81.6 55 72.7
CBR_g8168 Chara braunii HOM05D006197 ORTHO05D007718 4.6e-14 81.3 52 69.2
Nn1g08520 Nelumbo nucifera HOM05D006197 ORTHO05D007718 1.0e-13 80.1 95 49.5
Pp3c14_9970 Physcomitrium patens HOM05D006197 ORTHO05D007718 3.0e-13 78.6 99 46.5
Mapoly0046s0110 Marchantia polymorpha HOM05D006197 ORTHO05D007718 4.3e-12 74.7 88 45.5
SMO119G0374 Selaginella moellendorffii HOM05D006197 ORTHO05D007718 9.7e-12 73.6 112 45.5
Cc08_g01940 Coffea canephora HOM05D000011 ORTHO05D000157 6.9e-10 67.4 32 87.5
Migut.E01523 Erythranthe guttata HOM05D006197 ORTHO05D007718 1.2e-09 66.6 133 39.1
Migut.E01526 Erythranthe guttata HOM05D006197 ORTHO05D007718 7.6e-09 63.9 71 49.3
CDE05G1960 Ceratophyllum demersum HOM05D006197 ORTHO05D007718 1.2e-06 56.6 62 48.4


User provided reference genes

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