Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012357 Carpinus fangiana HOM05D007758 ORTHO05D009788 6.8e-27 123.2 62 100.0
ClCG09G012550 Citrullus lanatus HOM05D007758 ORTHO05D009788 8.9e-19 96.3 62 80.6
CiPaw.12G057000 Carya illinoinensis HOM05D007758 ORTHO05D009788 9.8e-18 92.8 62 79.0
TAR633G2270 Trochodendron aralioides HOM05D007758 ORTHO05D009788 1.7e-17 92.0 57 78.9
Oeu035101.1 Olea europaea HOM05D007758 ORTHO05D009788 2.9e-17 91.3 62 72.6
Lsat_1_v5_gn_6_90760 Lactuca sativa HOM05D007758 ORTHO05D009788 3.7e-17 90.9 62 77.4
MELO3C003346.2 Cucumis melo HOM05D007758 ORTHO05D009788 6.4e-17 90.1 58 79.3
Sed0000899 Sechium edule HOM05D007758 ORTHO05D009788 6.4e-17 90.1 54 81.5
Hma1.2p1_1673F.1_g296900 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 1.1e-16 89.4 57 77.2
TAR629G0116 Trochodendron aralioides HOM05D007758 ORTHO05D009788 1.1e-16 89.4 57 80.7
PGR042G0139 Punica granatum HOM05D007758 ORTHO05D009788 1.4e-16 89.0 55 80.0
THA.LOC104814457 Tarenaya hassleriana HOM05D007758 ORTHO05D009788 1.4e-16 89.0 57 77.2
CsaV3_3G049700 Cucumis sativus L. HOM05D007758 ORTHO05D009788 3.2e-16 87.8 58 75.9
CSS0049692 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 4.1e-16 87.4 62 74.2
Manes.15G171100 Manihot esculenta HOM05D007758 ORTHO05D009788 4.1e-16 87.4 56 75.0
CSS0001994 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 5.4e-16 87.0 54 77.8
CiPaw.10G048600 Carya illinoinensis HOM05D007758 ORTHO05D009788 9.2e-16 86.3 62 72.6
Phvul.003G226800 Phaseolus vulgaris HOM05D007758 ORTHO05D009788 1.2e-15 85.9 57 75.4
Hund11300 Selenicereus undatus HOM05D007758 ORTHO05D009788 1.6e-15 85.5 52 75.0
Haze_08336 Corylus avellana HOM05D007758 ORTHO05D009788 2.0e-15 85.1 41 100.0
MD04G1056100 Malus domestica HOM05D007758 ORTHO05D009788 2.7e-15 84.7 60 70.0
arahy.Tifrunner.gnm1.ann1.24R365 Arachis hypogaea HOM05D007758 ORTHO05D009788 3.5e-15 84.3 57 71.9
Oeu017314.1 Olea europaea HOM05D007758 ORTHO05D009788 3.5e-15 84.3 56 73.2
Glyma.05G067900 Glycine max HOM05D007758 ORTHO05D009788 6.0e-15 83.6 57 71.9
arahy.Tifrunner.gnm1.ann1.EY31BM Arachis hypogaea HOM05D007758 ORTHO05D009788 7.8e-15 83.2 56 71.4
COL.COLO4_06700 Corchorus olitorius HOM05D007758 ORTHO05D009788 7.8e-15 83.2 62 71.0
Hma1.2p1_0414F.1_g147490 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 7.8e-15 83.2 57 70.2
BcaC07g38037 Brassica carinata HOM05D007758 ORTHO05D009788 1.0e-14 82.8 60 70.0
A08p12870 Brassica napus HOM05D007758 ORTHO05D009788 1.0e-14 82.8 60 70.0
BolC8t48433H Brassica oleracea HOM05D007758 ORTHO05D009788 1.0e-14 82.8 60 70.0
Gohir.A09G197600 Gossypium hirsutum HOM05D007758 ORTHO05D009788 1.3e-14 82.4 49 79.6
Thecc.03G237200 Theobroma cacao HOM05D007758 ORTHO05D009788 1.3e-14 82.4 58 72.4
Nn1g00706 Nelumbo nucifera HOM05D007758 ORTHO05D009788 2.3e-14 81.6 53 69.8
Atru.chr9.1149 Acer truncatum HOM05D007758 ORTHO05D009788 3.0e-14 81.3 48 79.2
Thhalv10026742m.g Eutrema salsugineum HOM05D007758 ORTHO05D009788 3.0e-14 81.3 62 69.4
Glyma.17G150000 Glycine max HOM05D007758 ORTHO05D009788 3.0e-14 81.3 61 67.2
BraA08t33271Z Brassica rapa HOM05D007758 ORTHO05D009788 3.9e-14 80.9 62 69.4
Gohir.D09G192200 Gossypium hirsutum HOM05D007758 ORTHO05D009788 3.9e-14 80.9 61 67.2
Gorai.006G215000 Gossypium raimondii HOM05D007758 ORTHO05D009788 3.9e-14 80.9 61 67.2
CiPaw.09G190000 Carya illinoinensis HOM05D007758 ORTHO05D009788 5.0e-14 80.5 62 69.4
Lj4g0024059 Lotus japonicus HOM05D007758 ORTHO05D009788 5.0e-14 80.5 51 76.5
PGSC0003DMG400001836 Solanum tuberosum HOM05D007758 ORTHO05D009788 5.0e-14 80.5 61 68.9
CANSAT21G1691 Cannabis sativa HOM05D007758 ORTHO05D009788 6.6e-14 80.1 60 65.0
CARHR223670 Cardamine hirsuta HOM05D007758 ORTHO05D009788 8.6e-14 79.7 57 68.4
Ca_22029_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 1.1e-13 79.3 60 65.0
Migut.E00814 Erythranthe guttata HOM05D007758 ORTHO05D009788 1.1e-13 79.3 59 67.8
Medtr4g099120 Medicago truncatula HOM05D007758 ORTHO05D009788 1.1e-13 79.3 60 65.0
AL7G37620 Arabidopsis lyrata HOM05D007758 ORTHO05D009788 1.5e-13 79.0 62 67.7
Ca_28157_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 1.5e-13 79.0 60 65.0
DCAR_008312 Daucus carota HOM05D007758 ORTHO05D009788 2.5e-13 78.2 57 66.7
TPR.G17254 Trifolium pratense HOM05D007758 ORTHO05D009788 2.5e-13 78.2 60 65.0
GSVIVG01013273001 Vitis vinifera HOM05D007758 ORTHO05D009788 2.5e-13 78.2 60 70.0
CiPaw.14G095500 Carya illinoinensis HOM05D007758 ORTHO05D009788 4.3e-13 77.4 62 67.7
Ca_03905_v3 Cicer arietinum L. HOM05D000421 ORTHO05D009788 4.3e-13 77.4 47 74.5
Psat4g076760 Pisum sativum HOM05D007758 ORTHO05D009788 4.3e-13 77.4 47 76.6
Prupe.5G051100 Prunus persica HOM05D007758 ORTHO05D009788 4.3e-13 77.4 60 66.7
BcaC06g33532 Brassica carinata HOM05D007758 ORTHO05D009788 5.6e-13 77.0 62 66.1
BcaNung04665 Brassica carinata HOM05D007758 ORTHO05D009788 5.6e-13 77.0 62 66.1
CiPaw.02G038300 Carya illinoinensis HOM05D007758 ORTHO05D009788 5.6e-13 77.0 62 67.7
Medtr3g053460 Medicago truncatula HOM05D007758 ORTHO05D009788 5.6e-13 77.0 60 63.3
BcaB04g18382 Brassica carinata HOM05D007758 ORTHO05D009788 7.3e-13 76.6 62 64.5
A03p50300 Brassica napus HOM05D007758 ORTHO05D009788 7.3e-13 76.6 62 66.1
BraA03t14119Z Brassica rapa HOM05D007758 ORTHO05D009788 7.3e-13 76.6 62 66.1
Carub.0007s2429 Capsella rubella HOM05D007758 ORTHO05D009788 7.3e-13 76.6 57 70.2
CAN.G1445.11 Capsicum annuum HOM05D007758 ORTHO05D009788 7.3e-13 76.6 59 67.8
Cc08_g01520 Coffea canephora HOM05D007758 ORTHO05D009788 7.3e-13 76.6 60 65.0
AT4G17085 Arabidopsis thaliana HOM05D007758 ORTHO05D009788 9.5e-13 76.3 57 64.9
PSO782G2991 Papaver somniferum HOM05D007758 ORTHO05D009788 9.5e-13 76.3 59 61.0
Peaxi162Scf00715g00026 Petunia axillaris HOM05D007758 ORTHO05D009788 1.2e-12 75.9 61 65.6
TWI60G0956 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 1.2e-12 75.9 59 66.1
Ciclev10023239m.g Citrus clementina HOM05D007758 ORTHO05D009788 1.6e-12 75.5 60 65.0
Lalb_Chr09g0329711 Lupinus albus HOM05D007758 ORTHO05D009788 2.1e-12 75.1 57 63.2
RcHm_v2.0_Chr6g0259711 Rosa chinensis HOM05D007758 ORTHO05D009788 2.1e-12 75.1 62 66.1
CiPaw.14G095700 Carya illinoinensis HOM05D007758 ORTHO05D009788 3.6e-12 74.3 62 66.1
FAN13G2273 Fragaria x ananassa HOM05D007758 ORTHO05D009788 4.7e-12 73.9 45 75.6
FAN18G3236 Fragaria x ananassa HOM05D007758 ORTHO05D009788 4.7e-12 73.9 45 75.6
C07p48590 Brassica napus HOM05D007758 ORTHO05D009788 8.1e-12 73.2 62 62.9
BolC7t45367H Brassica oleracea HOM05D007758 ORTHO05D009788 8.1e-12 73.2 62 62.9
Potri.003G085400 Populus trichocarpa HOM05D007758 ORTHO05D009788 1.5e-10 68.9 75 49.3
Zm00001eb180740 Zea mays HOM05D007758 ORTHO05D009788 9.8e-10 66.2 60 56.7
FAN08G1799 Fragaria x ananassa HOM05D007758 ORTHO05D009788 1.7e-09 65.5 45 73.3
unitig_744.g24437 Utricularia gibba HOM05D007758 ORTHO05D009788 8.3e-09 63.2 92 44.6
Nitab4.5_0010949g0010 Nicotiana tabacum HOM05D007758 ORTHO05D009788 1.4e-08 62.4 58 56.9
RcHm_v2.0_Chr7g0205921 Rosa chinensis HOM05D007758 ORTHO05D009788 2.4e-08 61.6 61 55.7
BolC7t45365H Brassica oleracea HOM05D007758 ORTHO05D009788 5.4e-08 60.5 37 73.0
SHI07594 Sapria himalayana HOM05D007758 ORTHO05D009788 1.0e-06 56.2 36 75.0
TWI81G0786 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 6.6e-06 53.5 60 48.3


User provided reference genes

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