Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012348 Carpinus fangiana HOM05D006103 ORTHO05D007468 2.3e-41 171.8 86 100.0
Haze_08348 Corylus avellana HOM05D006103 ORTHO05D007468 7.4e-40 166.8 86 95.3
CiPaw.11G084400 Carya illinoinensis HOM05D006103 ORTHO05D007468 4.4e-32 141.0 86 80.2
QL12p008443 Quercus lobata HOM05D006103 ORTHO05D007468 7.7e-29 130.2 86 76.7
Dinv25153 Davidia involucrata HOM05D006103 ORTHO05D007468 1.5e-27 125.9 79 77.2
TAR375G0262 Trochodendron aralioides HOM05D006103 ORTHO05D007468 4.7e-26 120.9 86 74.4
CSS0016826 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 1.4e-25 119.4 84 69.0
CANSAT21G0053 Cannabis sativa HOM05D006103 ORTHO05D007468 1.4e-25 119.4 82 70.7
Prupe.5G053300 Prunus persica HOM05D006103 ORTHO05D007468 1.4e-25 119.4 96 66.7
MD04G1054200 Malus domestica HOM05D006103 ORTHO05D007468 1.8e-25 119.0 72 81.9
RcHm_v2.0_Chr7g0206421 Rosa chinensis HOM05D006103 ORTHO05D007468 1.8e-25 119.0 79 73.4
FvH4_5g20690 Fragaria vesca HOM05D006103 ORTHO05D007468 5.2e-25 117.5 83 72.3
FAN18G2558 Fragaria x ananassa HOM05D006103 ORTHO05D007468 5.2e-25 117.5 83 72.3
FAN08G0488 Fragaria x ananassa HOM05D006103 ORTHO05D007468 1.5e-24 115.9 83 71.1
Rhsim04G0176100 Rhododendron simsii HOM05D006103 ORTHO05D007468 2.0e-24 115.5 79 70.9
CSS0027189 Camellia sinensis var. sinensis HOM05D006103 ORTHO05D007468 7.5e-24 113.6 74 74.3
Duzib205G0801 Durio zibethinus HOM05D006103 ORTHO05D007468 2.2e-23 112.1 86 69.8
EL10Ac5g12236 Beta vulgaris HOM05D006103 ORTHO05D007468 8.3e-23 110.2 83 66.3
CsaV3_3G002190 Cucumis sativus L. HOM05D006103 ORTHO05D007468 8.3e-23 110.2 85 68.2
FAN04G1103 Fragaria x ananassa HOM05D006103 ORTHO05D007468 1.1e-22 109.8 83 69.9
Gohir.D08G182200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 1.1e-22 109.8 86 69.8
Gorai.004G191100 Gossypium raimondii HOM05D006103 ORTHO05D007468 1.1e-22 109.8 86 69.8
MELO3C013891.2 Cucumis melo HOM05D006103 ORTHO05D007468 1.4e-22 109.4 85 68.2
Gohir.A08G162200 Gossypium hirsutum HOM05D006103 ORTHO05D007468 1.4e-22 109.4 86 69.8
Psat4g074520 Pisum sativum HOM05D006103 ORTHO05D007468 1.8e-22 109.0 84 63.1
RcHm_v2.0_Chr4g0446321 Rosa chinensis HOM05D006103 ORTHO05D007468 3.1e-22 108.2 89 65.2
Thecc.03G237900 Theobroma cacao HOM05D006103 ORTHO05D007468 4.1e-22 107.8 86 66.3
Atru.chr9.1156 Acer truncatum HOM05D006103 ORTHO05D007468 5.3e-22 107.5 86 61.6
Actinidia03414 Actinidia chinensis HOM05D006103 ORTHO05D007468 5.3e-22 107.5 80 66.2
arahy.Tifrunner.gnm1.ann1.GKQN4T Arachis hypogaea HOM05D006103 ORTHO05D007468 5.3e-22 107.5 73 69.9
FAN13G0941 Fragaria x ananassa HOM05D006103 ORTHO05D007468 5.3e-22 107.5 83 68.7
Lalb_Chr16g0386381 Lupinus albus HOM05D006103 ORTHO05D007468 5.3e-22 107.5 84 65.5
Phvul.003G226000 Phaseolus vulgaris HOM05D006103 ORTHO05D007468 5.3e-22 107.5 73 72.6
Glyma.05G067000 Glycine max HOM05D006103 ORTHO05D007468 7.0e-22 107.1 67 76.1
PGR042G3635 Punica granatum HOM05D006103 ORTHO05D007468 7.0e-22 107.1 74 73.0
ClCG10G002100 Citrullus lanatus HOM05D006103 ORTHO05D007468 9.1e-22 106.7 85 67.1
Lj4g0004061 Lotus japonicus HOM05D006103 ORTHO05D007468 9.1e-22 106.7 84 60.7
Hund11307 Selenicereus undatus HOM05D006103 ORTHO05D007468 9.1e-22 106.7 83 65.1
VMungo0251G0880 Vigna mungo HOM05D006103 ORTHO05D007468 1.2e-21 106.3 85 63.5
Ca_22022_v3 Cicer arietinum L. HOM05D006103 ORTHO05D007468 2.0e-21 105.5 84 64.3
Hma1.2p1_1672F.1_g296810 Hydrangea macrophylla HOM05D006103 ORTHO05D007468 3.5e-21 104.8 71 69.0
Sed0003222 Sechium edule HOM05D006103 ORTHO05D007468 3.5e-21 104.8 79 68.4
AUR62018811 Chenopodium quinoa HOM05D006103 ORTHO05D007468 5.9e-21 104.0 83 62.7
Potri.001G149800 Populus trichocarpa HOM05D006103 ORTHO05D007468 5.9e-21 104.0 72 70.8
Eucgr.E00334 Eucalyptus grandis HOM05D006103 ORTHO05D007468 7.7e-21 103.6 73 74.0
MBI04_g46823_MAGBIO Magnolia biondii HOM05D006103 ORTHO05D007468 7.7e-21 103.6 77 70.1
PSO063G5173 Papaver somniferum HOM05D006103 ORTHO05D007468 1.0e-20 103.2 65 75.4
Aqoxy3G02600 Aquilegia oxysepala HOM05D006103 ORTHO05D007468 1.7e-20 102.4 83 60.2
CDE02G1890 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 1.7e-20 102.4 80 65.0
Lj8C280G0 Lonicera japonica HOM05D006103 ORTHO05D007468 1.7e-20 102.4 79 60.8
Medtr4g099190 Medicago truncatula HOM05D006103 ORTHO05D007468 1.7e-20 102.4 63 74.6
Sabra01G0119800 Salix brachista HOM05D006103 ORTHO05D007468 2.2e-20 102.1 71 70.4
TPR.G25737 Trifolium pratense HOM05D006103 ORTHO05D007468 2.2e-20 102.1 84 60.7
MSTRG.13771 Avicennia marina HOM05D006103 ORTHO05D007468 3.8e-20 101.3 79 65.8
DCAR_004514 Daucus carota HOM05D006103 ORTHO05D007468 3.8e-20 101.3 81 61.7
Os06g0139700 Oryza sativa ssp. japonica HOM05D006103 ORTHO05D007468 5.0e-20 100.9 83 60.2
Cpa.g.sc98.70 Carica papaya HOM05D006103 ORTHO05D007468 6.5e-20 100.5 86 59.3
CDE11G0859 Ceratophyllum demersum HOM05D006103 ORTHO05D007468 6.5e-20 100.5 80 63.8
Oeu054287.1 Olea europaea HOM05D006103 ORTHO05D007468 6.5e-20 100.5 78 60.3
Ciclev10021261m.g Citrus clementina HOM05D006103 ORTHO05D007468 1.1e-19 99.8 86 59.3
vmacro00388 Vaccinium macrocarpon HOM05D006103 ORTHO05D007468 1.5e-19 99.4 81 63.0
Zm00001eb377550 Zea mays HOM05D006103 ORTHO05D007468 1.5e-19 99.4 85 61.2
AUR62007192 Chenopodium quinoa HOM05D006103 ORTHO05D007468 2.5e-19 98.6 83 60.2
Lj8A286T53 Lonicera japonica HOM05D006103 ORTHO05D007468 2.5e-19 98.6 79 58.2
PGSC0003DMG400026583 Solanum tuberosum HOM05D006103 ORTHO05D007468 3.2e-19 98.2 80 66.2
COL.COLO4_06694 Corchorus olitorius HOM05D006103 ORTHO05D007468 5.5e-19 97.4 80 65.0
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 7.2e-19 97.1 64 70.3
Aa31LG9G5870 Aethionema arabicum HOM05D006103 ORTHO05D007468 9.4e-19 96.7 58 82.8
Cc08_g11160 Coffea canephora HOM05D006103 ORTHO05D007468 2.1e-18 95.5 80 56.2
Sp2g11900 Schrenkiella parvula HOM05D006103 ORTHO05D007468 2.7e-18 95.1 78 60.3
Sopen06g021130 Solanum pennellii HOM05D006103 ORTHO05D007468 2.7e-18 95.1 80 65.0
TWI60G1123 Tripterygium wilfordii HOM05D006103 ORTHO05D007468 3.6e-18 94.7 86 58.1
unitig_699.g19773 Utricularia gibba HOM05D006103 ORTHO05D007468 3.6e-18 94.7 66 71.2
Nitab4.5_0000506g0180 Nicotiana tabacum HOM05D006103 ORTHO05D007468 4.7e-18 94.4 79 63.3
Nitab4.5_0013289g0030 Nicotiana tabacum HOM05D006103 ORTHO05D007468 4.7e-18 94.4 83 60.2
Solyc06g060990.4 Solanum lycopersicum HOM05D006103 ORTHO05D007468 4.7e-18 94.4 80 65.0
Manes.17G024600 Manihot esculenta HOM05D006103 ORTHO05D007468 6.1e-18 94.0 79 57.0
HanXRQChr03g0089621 Helianthus annuus HOM05D006103 ORTHO05D007468 1.4e-17 92.8 67 65.7
BcaC03g16934 Brassica carinata HOM05D006103 ORTHO05D007468 1.8e-17 92.4 70 65.7
A02p30800 Brassica napus HOM05D006103 ORTHO05D007468 1.8e-17 92.4 70 65.7
C02p48360 Brassica napus HOM05D006103 ORTHO05D007468 1.8e-17 92.4 70 65.7
BolC2t10867H Brassica oleracea HOM05D006103 ORTHO05D007468 1.8e-17 92.4 70 65.7
BraA02t08094Z Brassica rapa HOM05D006103 ORTHO05D007468 1.8e-17 92.4 70 65.7
Carub.0008s0066 Capsella rubella HOM05D006103 ORTHO05D007468 1.8e-17 92.4 62 72.6
RcHm_v2.0_Chr6g0308851 Rosa chinensis HOM05D006103 ORTHO05D007468 1.8e-17 92.4 54 83.3
BcaC03g15262 Brassica carinata HOM05D006103 ORTHO05D007468 3.0e-17 91.7 70 64.3
BcaC07g39778 Brassica carinata HOM05D006103 ORTHO05D007468 3.0e-17 91.7 70 64.3
C02p28550 Brassica napus HOM05D006103 ORTHO05D007468 3.0e-17 91.7 70 64.3
BolC2t08897H Brassica oleracea HOM05D006103 ORTHO05D007468 3.0e-17 91.7 70 64.3
SGA_v2.0_scaffold20G09256 Striga asiatica HOM05D006103 ORTHO05D007468 3.0e-17 91.7 76 61.8
CAN.G422.12 Capsicum annuum HOM05D006103 ORTHO05D007468 4.0e-17 91.3 80 62.5
Peaxi162Scf00190g00616 Petunia axillaris HOM05D006103 ORTHO05D007468 4.0e-17 91.3 71 70.4
AL8G11110 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 5.2e-17 90.9 80 56.2
AT5G47090 Arabidopsis thaliana HOM05D006103 ORTHO05D007468 6.8e-17 90.5 62 69.4
Lsat_1_v5_gn_6_94780 Lactuca sativa HOM05D006103 ORTHO05D007468 8.8e-17 90.1 78 56.4
CARHR174300 Cardamine hirsuta HOM05D006103 ORTHO05D007468 3.4e-16 88.2 73 61.6
Thhalv10000969m.g Eutrema salsugineum HOM05D006103 ORTHO05D007468 7.5e-16 87.0 80 60.0
Migut.E01036 Erythranthe guttata HOM05D006103 ORTHO05D007468 1.3e-15 86.3 71 59.2
Migut.E01310 Erythranthe guttata HOM05D006103 ORTHO05D007468 1.3e-15 86.3 71 59.2
SEGI_16450 Sequoiadendron giganteum HOM05D006103 ORTHO05D007468 2.8e-15 85.1 61 65.6
SHI07660 Sapria himalayana HOM05D006103 ORTHO05D007468 1.8e-14 82.4 69 55.1
Lj8C284T4 Lonicera japonica HOM05D006103 ORTHO05D007468 5.4e-14 80.9 53 64.2
CARHR174410 Cardamine hirsuta HOM05D006103 ORTHO05D007468 1.7e-12 75.9 48 75.0
AL8G11000 Arabidopsis lyrata HOM05D006103 ORTHO05D007468 5.0e-12 74.3 65 53.8
Carub.0008s0069 Capsella rubella HOM05D006103 ORTHO05D007468 5.0e-12 74.3 61 63.9
ATR0665G401 Amborella trichopoda HOM05D006103 ORTHO05D007468 6.6e-12 73.9 45 75.6
Pp3c16_2730 Physcomitrium patens HOM05D006103 ORTHO05D007468 2.8e-10 68.6 62 53.2
CBR_g49667 Chara braunii HOM05D006103 ORTHO05D007468 6.8e-09 63.9 53 52.8
SMO171G0121 Selaginella moellendorffii HOM05D006103 ORTHO05D007468 9.8e-08 60.1 61 49.2
MCO11G792 Micromonas commoda HOM05D006103 ORTHO05D007468 6.3e-07 57.4 50 50.0


User provided reference genes

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