Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012333 Carpinus fangiana HOM05D004409 ORTHO05D005292 5.0e-60 234.2 114 100.0
Cfa012334 Carpinus fangiana HOM05D004409 ORTHO05D005292 3.2e-46 188.3 100 90.0
Haze_08359 Corylus avellana HOM05D004409 ORTHO05D005292 1.6e-37 159.5 96 80.2
QL12p008592 Quercus lobata HOM05D004409 ORTHO05D005292 1.5e-35 152.9 110 68.2
Dinv28881 Davidia involucrata HOM05D004409 ORTHO05D005292 2.1e-34 149.1 108 67.6
Ciclev10022946m.g Citrus clementina HOM05D004409 ORTHO05D005292 6.2e-34 147.5 101 70.3
Potri.003G084000 Populus trichocarpa HOM05D004409 ORTHO05D005292 8.1e-34 147.1 99 67.7
Actinidia31492 Actinidia chinensis HOM05D004409 ORTHO05D005292 1.8e-33 146.0 107 64.5
Sabra03G0054600 Salix brachista HOM05D004409 ORTHO05D005292 1.8e-33 146.0 99 67.7
Atru.chr9.1197 Acer truncatum HOM05D004409 ORTHO05D005292 4.0e-33 144.8 101 68.3
TWI60G0543 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 5.2e-33 144.4 102 68.6
CSS0044628 Camellia sinensis var. sinensis HOM05D004409 ORTHO05D005292 3.4e-32 141.7 78 78.2
Thecc.03G239100 Theobroma cacao HOM05D004409 ORTHO05D005292 1.3e-31 139.8 101 63.4
GSVIVG01004835001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.7e-31 139.4 108 61.1
Aqoxy3G02644 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 2.2e-31 139.0 100 59.0
Duzib205G0528 Durio zibethinus HOM05D004409 ORTHO05D005292 2.9e-31 138.7 108 62.0
Manes.01G089900 Manihot esculenta HOM05D004409 ORTHO05D005292 3.8e-31 138.3 102 60.8
TAR636G0884 Trochodendron aralioides HOM05D004409 ORTHO05D005292 4.9e-31 137.9 108 63.0
Nitab4.5_0000185g0190 Nicotiana tabacum HOM05D004409 ORTHO05D005292 6.4e-31 137.5 102 64.7
Actinidia10866 Actinidia chinensis HOM05D004409 ORTHO05D005292 8.4e-31 137.1 106 62.3
COL.COLO4_06685 Corchorus olitorius HOM05D004409 ORTHO05D005292 8.4e-31 137.1 85 69.4
THA.LOC104809923 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 1.1e-30 136.7 100 62.0
Duzib068G0789 Durio zibethinus HOM05D004409 ORTHO05D005292 1.9e-30 136.0 107 58.9
Hma1.2p1_3159F.1_g333389 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 1.9e-30 136.0 100 63.0
Gohir.A12G212400 Gossypium hirsutum HOM05D004409 ORTHO05D005292 5.4e-30 134.4 99 61.6
Gorai.008G230500 Gossypium raimondii HOM05D004409 ORTHO05D005292 5.4e-30 134.4 99 61.6
Peaxi162Scf00102g00085 Petunia axillaris HOM05D004409 ORTHO05D005292 5.4e-30 134.4 100 66.0
Gohir.D12G214900 Gossypium hirsutum HOM05D004409 ORTHO05D005292 9.2e-30 133.7 99 61.6
ECA240G1407 Erigeron canadensis HOM05D004409 ORTHO05D005292 1.2e-29 133.3 77 71.4
HanXRQChr03g0089681 Helianthus annuus HOM05D004409 ORTHO05D005292 1.6e-29 132.9 77 71.4
DCAR_008327 Daucus carota HOM05D004409 ORTHO05D005292 2.1e-29 132.5 78 74.4
CAN.G845.22 Capsicum annuum HOM05D004409 ORTHO05D005292 3.5e-29 131.7 108 57.4
Duzib068G1042 Durio zibethinus HOM05D004409 ORTHO05D005292 4.6e-29 131.3 107 57.0
GSVIVG01004822001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.0e-28 130.2 96 63.5
GSVIVG01004827001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.0e-28 130.2 96 63.5
GSVIVG01004836001 Vitis vinifera HOM05D004409 ORTHO05D005292 3.0e-28 128.6 96 55.2
Ciclev10030379m.g Citrus clementina HOM05D004409 ORTHO05D005292 6.6e-28 127.5 78 66.7
Cc08_g11210 Coffea canephora HOM05D004409 ORTHO05D005292 6.6e-28 127.5 77 72.7
GSVIVG01004838001 Vitis vinifera HOM05D004409 ORTHO05D005292 6.6e-28 127.5 92 57.6
GSVIVG01004832001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.5e-27 126.3 78 65.4
Ciclev10022894m.g Citrus clementina HOM05D004409 ORTHO05D005292 2.5e-27 125.6 107 51.4
Thecc.03G144900 Theobroma cacao HOM05D004409 ORTHO05D005292 2.5e-27 125.6 99 56.6
Gohir.D13G124300 Gossypium hirsutum HOM05D004409 ORTHO05D005292 5.6e-27 124.4 86 61.6
Prupe.5G054600 Prunus persica HOM05D004409 ORTHO05D005292 7.3e-27 124.0 101 58.4
ECA240G4009 Erigeron canadensis HOM05D004409 ORTHO05D005292 1.6e-26 122.9 80 63.8
HanXRQChr13g0419061 Helianthus annuus HOM05D004409 ORTHO05D005292 1.6e-26 122.9 94 57.4
CANSAT21G0737 Cannabis sativa HOM05D004409 ORTHO05D005292 3.6e-26 121.7 100 55.0
CANSAT21G0033 Cannabis sativa HOM05D004409 ORTHO05D005292 6.2e-26 120.9 79 65.8
Dinv25140 Davidia involucrata HOM05D004409 ORTHO05D005292 6.2e-26 120.9 103 53.4
HanXRQChr03g0089691 Helianthus annuus HOM05D004409 ORTHO05D005292 2.4e-25 119.0 108 50.0
Atru.chr9.1196 Acer truncatum HOM05D004409 ORTHO05D005292 3.1e-25 118.6 78 62.8
Thecc.03G144800 Theobroma cacao HOM05D004409 ORTHO05D005292 3.1e-25 118.6 108 53.7
ClCG10G002150 Citrullus lanatus HOM05D004409 ORTHO05D005292 5.2e-25 117.9 99 53.5
Dinv28880 Davidia involucrata HOM05D001887 ORTHO05D003756 5.2e-25 117.9 108 52.8
Lsat_1_v5_gn_6_94501 Lactuca sativa HOM05D004409 ORTHO05D005292 6.9e-25 117.5 104 51.9
Sed0027041 Sechium edule HOM05D004409 ORTHO05D005292 6.9e-25 117.5 82 59.8
Atru.chr6.1971 Acer truncatum HOM05D004409 ORTHO05D005292 8.9e-25 117.1 100 52.0
Hma1.2p1_1014F.1_g247850 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 8.9e-25 117.1 105 53.3
COL.COLO4_21695 Corchorus olitorius HOM05D004409 ORTHO05D005292 1.2e-24 116.7 77 64.9
TAR375G0484 Trochodendron aralioides HOM05D004409 ORTHO05D005292 1.2e-24 116.7 109 48.6
DCAR_005587 Daucus carota HOM05D004409 ORTHO05D005292 1.5e-24 116.3 105 48.6
Peaxi162Scf00391g00715 Petunia axillaris HOM05D004409 ORTHO05D005292 1.5e-24 116.3 84 57.1
COL.COLO4_37301 Corchorus olitorius HOM05D004409 ORTHO05D005292 2.0e-24 115.9 107 53.3
MELO3C014170.2 Cucumis melo HOM05D004409 ORTHO05D005292 2.0e-24 115.9 108 49.1
Lsat_1_v5_gn_6_94401 Lactuca sativa HOM05D004409 ORTHO05D005292 2.0e-24 115.9 99 52.5
Thecc.03G144700 Theobroma cacao HOM05D004409 ORTHO05D005292 2.0e-24 115.9 78 62.8
TWI39G0193 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 2.0e-24 115.9 78 64.1
TWI39G0310 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 2.0e-24 115.9 78 62.8
Thecc.08G189000 Theobroma cacao HOM05D004409 ORTHO05D005292 3.4e-24 115.2 105 51.4
TWI39G0462 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 4.4e-24 114.8 78 61.5
Duzib205G0410 Durio zibethinus HOM05D004409 ORTHO05D005292 7.6e-24 114.0 108 51.9
GSVIVG01013815001 Vitis vinifera HOM05D004409 ORTHO05D005292 7.6e-24 114.0 111 43.2
TAR375G0026 Trochodendron aralioides HOM05D004409 ORTHO05D005292 9.9e-24 113.6 110 50.9
TAR375G0498 Trochodendron aralioides HOM05D004409 ORTHO05D005292 9.9e-24 113.6 110 50.0
Ciclev10033339m.g Citrus clementina HOM05D004409 ORTHO05D005292 1.7e-23 112.8 77 63.6
FAN10G3781 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.7e-23 112.8 101 47.5
FvH4_7g26400 Fragaria vesca HOM05D004409 ORTHO05D005292 2.2e-23 112.5 101 48.5
COL.COLO4_37302 Corchorus olitorius HOM05D004409 ORTHO05D005292 2.9e-23 112.1 104 47.1
CsaV3_3G004710 Cucumis sativus L. HOM05D004409 ORTHO05D005292 2.9e-23 112.1 99 50.5
Actinidia01026 Actinidia chinensis HOM05D004409 ORTHO05D005292 3.8e-23 111.7 106 50.0
PGR142G3629 Punica granatum HOM05D004409 ORTHO05D005292 3.8e-23 111.7 100 52.0
ATR1136G211 Amborella trichopoda HOM05D004409 ORTHO05D005292 6.4e-23 110.9 99 51.5
ATR1136G215 Amborella trichopoda HOM05D004409 ORTHO05D005292 6.4e-23 110.9 85 51.8
CAN.G572.17 Capsicum annuum HOM05D004409 ORTHO05D005292 8.4e-23 110.5 109 51.4
DCAR_003519 Daucus carota HOM05D004409 ORTHO05D005292 8.4e-23 110.5 78 57.7
Dinv34530 Davidia involucrata HOM05D004409 ORTHO05D005292 1.1e-22 110.2 105 50.5
PGR042G3450 Punica granatum HOM05D004409 ORTHO05D005292 1.1e-22 110.2 98 51.0
TWI39G0819 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.4e-22 109.8 74 60.8
ECA240G0589 Erigeron canadensis HOM05D004409 ORTHO05D005292 1.9e-22 109.4 74 56.8
GSVIVG01024506001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.9e-22 109.4 99 53.5
HanXRQChr13g0419051 Helianthus annuus HOM05D004409 ORTHO05D005292 2.4e-22 109.0 77 55.8
Aqoxy6G00065 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 3.2e-22 108.6 102 46.1
ATR1136G026 Amborella trichopoda HOM05D004409 ORTHO05D005292 5.4e-22 107.8 108 46.3
Hund27103 Selenicereus undatus HOM05D004409 ORTHO05D005292 7.1e-22 107.5 99 49.5
GSVIVG01013825001 Vitis vinifera HOM05D004409 ORTHO05D005292 7.1e-22 107.5 108 45.4
GSVIVG01024502001 Vitis vinifera HOM05D004409 ORTHO05D005292 9.3e-22 107.1 111 45.9
MELO3C013895.2 Cucumis melo HOM05D004409 ORTHO05D005292 1.2e-21 106.7 98 48.0
TAR375G0880 Trochodendron aralioides HOM05D004409 ORTHO05D005292 1.2e-21 106.7 106 49.1
FAN06G5092 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.6e-21 106.3 100 48.0
Oeu019420.1 Olea europaea HOM05D004409 ORTHO05D005292 1.6e-21 106.3 100 44.0
CsaV3_3G002240 Cucumis sativus L. HOM05D004409 ORTHO05D005292 2.1e-21 105.9 98 48.0
Thecc.07G180600 Theobroma cacao HOM05D004409 ORTHO05D005292 2.1e-21 105.9 109 46.8
FvH4_7g26430 Fragaria vesca HOM05D004409 ORTHO05D005292 2.7e-21 105.5 99 48.5
Hma1.2p1_1014F.1_g247840 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 2.7e-21 105.5 105 50.5
RcHm_v2.0_Chr1g0328171 Rosa chinensis HOM05D004409 ORTHO05D005292 2.7e-21 105.5 104 47.1
RcHm_v2.0_Chr1g0372991 Rosa chinensis HOM05D004409 ORTHO05D005292 3.5e-21 105.1 79 53.2
GSVIVG01013894001 Vitis vinifera HOM05D004409 ORTHO05D005292 3.5e-21 105.1 82 57.3
FAN03G2468 Fragaria x ananassa HOM05D004409 ORTHO05D005292 4.6e-21 104.8 106 47.2
Eucgr.K00114 Eucalyptus grandis HOM05D004409 ORTHO05D005292 6.0e-21 104.4 79 55.7
FAN10G4140 Fragaria x ananassa HOM05D004409 ORTHO05D005292 7.8e-21 104.0 99 47.5
RcHm_v2.0_Chr1g0328141 Rosa chinensis HOM05D004409 ORTHO05D005292 7.8e-21 104.0 79 51.9
Actinidia25914 Actinidia chinensis HOM05D004409 ORTHO05D005292 1.0e-20 103.6 86 47.7
EL10Ac1g00121 Beta vulgaris HOM05D004409 ORTHO05D005292 1.0e-20 103.6 105 45.7
Hma1.2p1_1014F.1_g247830 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 1.0e-20 103.6 103 50.5
RcHm_v2.0_Chr1g0372951 Rosa chinensis HOM05D004409 ORTHO05D005292 1.0e-20 103.6 103 47.6
PGSC0003DMG400026212 Solanum tuberosum HOM05D004409 ORTHO05D005292 1.3e-20 103.2 103 49.5
GSVIVG01013816001 Vitis vinifera HOM05D004409 ORTHO05D005292 5.1e-20 101.3 82 57.3
HanXRQChr13g0418291 Helianthus annuus HOM05D004409 ORTHO05D005292 8.7e-20 100.5 103 49.5
CANSAT56G2887 Cannabis sativa HOM05D004409 ORTHO05D005292 1.1e-19 100.1 98 45.9
Cc06_g12260 Coffea canephora HOM05D004409 ORTHO05D005292 1.1e-19 100.1 102 45.1
MD07G1239500 Malus domestica HOM05D004409 ORTHO05D005292 1.1e-19 100.1 79 51.9
CANSAT56G2756 Cannabis sativa HOM05D004409 ORTHO05D005292 1.5e-19 99.8 103 44.7
FAN01G0604 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.5e-19 99.8 99 46.5
FAN17G1151 Fragaria x ananassa HOM05D004409 ORTHO05D005292 4.3e-19 98.2 107 45.8
Cpa.g.sc13.213 Carica papaya HOM05D004409 ORTHO05D005292 5.6e-19 97.8 78 50.0
CANSAT56G0658 Cannabis sativa HOM05D004409 ORTHO05D005292 7.3e-19 97.4 105 42.9
CANSAT56G4079 Cannabis sativa HOM05D004409 ORTHO05D005292 1.3e-18 96.7 105 41.9
Cfa012335 Carpinus fangiana HOM05D004409 ORTHO05D005292 2.1e-18 95.9 111 48.6
COL.COLO4_32251 Corchorus olitorius HOM05D004409 ORTHO05D005292 6.2e-18 94.4 102 45.1
Prupe.7G057100 Prunus persica HOM05D004409 ORTHO05D005292 6.2e-18 94.4 110 44.5
Migut.J00932 Erythranthe guttata HOM05D004409 ORTHO05D005292 8.1e-18 94.0 100 47.0
Oeu006074.1 Olea europaea HOM05D004409 ORTHO05D005292 8.1e-18 94.0 105 43.8
Oeu056339.1 Olea europaea HOM05D004409 ORTHO05D005292 1.1e-17 93.6 81 49.4
SGA_v2.0_scaffold91G28102 Striga asiatica HOM05D004409 ORTHO05D005292 1.4e-17 93.2 96 49.0
THA.LOC104816486 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 5.3e-17 91.3 98 45.9
Migut.H01906 Erythranthe guttata HOM05D004409 ORTHO05D005292 9.0e-17 90.5 109 42.2
Ciclev10033338m.g Citrus clementina HOM05D004409 ORTHO05D005292 1.2e-16 90.1 77 50.6
MSTRG.27238 Avicennia marina HOM05D004409 ORTHO05D005292 3.4e-16 88.6 101 46.5
MD07G1239700 Malus domestica HOM05D004409 ORTHO05D005292 1.7e-15 86.3 101 43.6
MD07G1239800 Malus domestica HOM05D004409 ORTHO05D005292 2.2e-15 85.9 101 42.6
Aa31LG9G14800 Aethionema arabicum HOM05D004409 ORTHO05D005292 2.9e-15 85.5 100 42.0
Migut.H01907 Erythranthe guttata HOM05D004409 ORTHO05D005292 2.9e-15 85.5 109 39.4
A03p40420 Brassica napus HOM05D004409 ORTHO05D005292 6.4e-15 84.3 79 46.8
BolC3t17205H Brassica oleracea HOM05D004409 ORTHO05D005292 6.4e-15 84.3 79 46.8
BraA03t13197Z Brassica rapa HOM05D004409 ORTHO05D005292 6.4e-15 84.3 79 46.8
Gorai.013G138900 Gossypium raimondii HOM05D004409 ORTHO05D005292 1.4e-14 83.2 67 53.7
BcaC01g03728 Brassica carinata HOM05D004409 ORTHO05D005292 2.4e-14 82.4 78 46.2
C03p49230 Brassica napus HOM05D004409 ORTHO05D005292 5.4e-14 81.3 78 44.9
BcaB04g18966 Brassica carinata HOM05D004409 ORTHO05D005292 7.1e-14 80.9 78 44.9
ATR0745G048 Amborella trichopoda HOM05D004409 ORTHO05D005292 2.7e-13 79.0 111 35.1
Eucgr.K00115 Eucalyptus grandis HOM05D004409 ORTHO05D005292 6.7e-12 74.3 99 43.4
CAN.G572.18 Capsicum annuum HOM05D004409 ORTHO05D005292 8.7e-12 73.9 107 33.6
Sp6g08250 Schrenkiella parvula HOM05D004409 ORTHO05D005292 8.7e-12 73.9 100 39.0
Carub.0006s2782 Capsella rubella HOM05D004409 ORTHO05D005292 2.8e-10 68.9 102 36.3
CARHR260260 Cardamine hirsuta HOM05D004409 ORTHO05D005292 8.1e-10 67.4 76 39.5
TAR636G0767 Trochodendron aralioides HOM05D004409 ORTHO05D005292 3.1e-09 65.5 67 52.2
C09p37510 Brassica napus HOM05D004489 ORTHO05D032456 9.0e-09 63.9 108 38.9
BolC9t56581H Brassica oleracea HOM05D004489 ORTHO05D032456 9.0e-09 63.9 108 38.9
BcaB01g02799 Brassica carinata HOM05D004409 ORTHO05D005292 2.6e-08 62.4 108 30.6
BcaC04g20961 Brassica carinata HOM05D004489 ORTHO05D032456 7.6e-08 60.8 108 37.0
CANSAT80G1481 Cannabis sativa HOM05D002739 ORTHO05D002877 1.7e-07 59.7 54 42.6
Nn7g36459 Nelumbo nucifera HOM05D002739 ORTHO05D002877 2.9e-07 58.9 112 31.2
SMO134G0150 Selaginella moellendorffii HOM05D002739 ORTHO05D002877 1.9e-06 56.2 50 42.0
Prupe.2G028300 Prunus persica HOM05D002739 ORTHO05D002877 2.4e-06 55.8 52 44.2
SMO145G0015 Selaginella moellendorffii HOM05D051947 ORTHO05D002877 3.2e-06 55.5 53 39.6
SMO145G0105 Selaginella moellendorffii HOM05D051947 ORTHO05D002877 3.2e-06 55.5 53 39.6


User provided reference genes

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