Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 1.8e-174 615.9 328 100.0
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 2.1e-151 539.3 328 81.4
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 1.8e-150 536.2 328 87.5
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 1.6e-143 513.1 328 78.4
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 4.0e-142 508.4 328 77.1
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 8.8e-142 507.3 328 77.1
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 4.4e-141 505.0 329 76.6
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 4.4e-141 505.0 329 76.6
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 4.4e-141 505.0 328 76.5
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 1.3e-140 503.4 329 77.2
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 4.9e-140 501.5 331 75.8
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 3.1e-139 498.8 349 75.9
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.7e-138 495.7 328 75.0
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 4.5e-138 495.0 328 78.7
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 2.3e-137 492.7 329 73.3
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 2.3e-137 492.7 330 75.5
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 6.6e-137 491.1 340 73.8
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 5.6e-136 488.0 329 78.7
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 5.6e-136 488.0 328 74.4
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 2.8e-135 485.7 337 77.7
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 5.2e-134 481.5 339 75.8
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.5e-133 479.9 336 78.9
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 2.0e-133 479.6 329 71.7
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 3.4e-133 478.8 330 75.5
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 1.3e-132 476.9 328 71.6
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 1.3e-132 476.9 336 78.3
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 1.3e-132 476.9 331 72.5
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 2.9e-132 475.7 328 71.3
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 3.7e-132 475.3 328 78.7
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 6.4e-132 474.6 329 71.7
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 9.2e-131 470.7 337 77.4
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 1.2e-130 470.3 329 71.1
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 2.0e-130 469.5 339 71.1
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 2.7e-130 469.2 343 69.4
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 2.7e-130 469.2 333 70.6
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 5.9e-130 468.0 323 70.9
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 5.0e-129 464.9 329 74.5
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 1.5e-128 463.4 331 69.8
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 1.9e-128 463.0 329 70.8
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 4.3e-128 461.8 329 75.4
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 4.3e-128 461.8 329 70.8
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 5.6e-128 461.5 331 75.5
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 1.6e-127 459.9 331 77.0
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 2.1e-127 459.5 330 75.5
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 2.8e-127 459.1 346 67.3
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 4.7e-127 458.4 384 62.8
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 8.0e-127 457.6 385 62.3
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 3.1e-126 455.7 348 67.2
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.0e-125 453.0 328 68.9
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 2.6e-125 452.6 328 69.8
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 1.3e-124 450.3 260 83.5
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 1.7e-124 449.9 342 66.7
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 3.7e-124 448.7 356 70.2
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 3.7e-124 448.7 386 61.4
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 8.3e-124 447.6 334 74.6
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.4e-123 446.8 330 67.9
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 7.0e-123 444.5 361 63.7
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 6.0e-122 441.4 374 62.6
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 3.0e-121 439.1 259 79.2
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 5.0e-121 438.3 331 68.6
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 1.9e-120 436.4 333 68.5
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 4.3e-120 435.3 304 72.4
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 7.3e-120 434.5 254 81.1
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 9.5e-120 434.1 259 79.9
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 1.2e-119 433.7 282 79.4
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 1.6e-119 433.3 384 60.2
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 2.1e-119 433.0 343 63.6
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 2.8e-119 432.6 381 61.4
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 4.7e-119 431.8 257 80.2
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 1.1e-118 430.6 353 68.3
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 1.4e-118 430.3 335 66.6
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 1.4e-118 430.3 259 79.2
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 2.3e-118 429.5 335 66.6
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 4.0e-118 428.7 319 68.0
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 1.4e-115 420.2 330 65.8
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 2.4e-115 419.5 330 64.8
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 2.7e-114 416.0 393 57.3
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 1.0e-113 414.1 342 62.0
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 1.7e-113 413.3 341 67.2
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 8.1e-111 404.4 353 62.6
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 6.8e-110 401.4 235 80.9
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 2.0e-109 399.8 334 65.3
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 1.7e-108 396.7 267 71.9
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 6.4e-108 394.8 347 60.8
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 1.1e-107 394.0 214 86.9
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 1.9e-107 393.3 207 88.9
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 4.6e-106 388.7 329 60.2
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 5.1e-105 385.2 224 80.4
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 7.3e-104 381.3 259 71.0
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 3.6e-103 379.0 328 60.4
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 5.8e-101 371.7 328 58.8
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 5.8e-101 371.7 327 59.0
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 8.4e-100 367.9 264 67.8
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 8.4e-100 367.9 318 62.3
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 1.1e-99 367.5 328 58.8
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 7.1e-99 364.8 339 62.5
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 7.1e-99 364.8 293 61.4
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 9.3e-99 364.4 323 57.9
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 1.6e-98 363.6 328 57.6
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 1.7e-97 360.1 328 56.7
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 6.9e-94 348.2 262 65.6
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 6.4e-92 341.7 328 54.0
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 3.0e-89 332.8 259 65.6
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 6.6e-89 331.6 328 53.0
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 6.6e-89 331.6 328 53.0
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 8.7e-89 331.3 257 59.9
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 4.3e-88 328.9 328 52.7
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 2.4e-86 323.2 328 54.0
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 1.2e-85 320.9 247 74.1
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 1.3e-84 317.4 328 53.0
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 1.3e-84 317.4 332 49.4
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 2.2e-84 316.6 329 52.3
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 1.1e-83 314.3 328 53.7
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 2.4e-83 313.2 328 53.4
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 1.0e-81 307.8 328 53.7
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 3.9e-81 305.8 174 83.3
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 1.0e-73 281.2 159 79.9
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 2.3e-73 280.0 247 66.4
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.1e-72 277.7 160 78.1
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 1.4e-70 270.8 264 50.8
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.8e-65 253.8 153 76.5
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 6.3e-63 245.4 150 78.7
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.7e-60 237.3 302 42.7
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 2.9e-60 236.5 313 42.2
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.0e-49 201.4 190 60.0
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 9.7e-48 194.9 113 78.8
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 8.2e-47 191.8 119 79.0
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.8e-38 164.1 100 77.0
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 4.1e-38 162.9 246 38.6
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 6.8e-33 145.6 100 69.0
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 8.3e-31 138.7 80 78.8
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 8.5e-28 128.6 123 63.4
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 4.1e-22 109.8 131 55.0
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.7e-21 107.1 93 55.9
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 1.0e-17 95.1 52 86.5
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 8.3e-15 85.5 48 83.3
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 2.4e-14 84.0 55 70.9
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 2.4e-14 84.0 44 86.4
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 9.2e-14 82.0 55 78.2
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 4.7e-10 69.7 376 20.7
Gohir.D05G078100 Gossypium hirsutum HOM05D006479 ORTHO05D008310 1.1e-06 58.5 73 38.4
Gorai.009G079600 Gossypium raimondii HOM05D006479 ORTHO05D008310 1.1e-06 58.5 73 38.4
Gohir.A05G075300 Gossypium hirsutum HOM05D006479 ORTHO05D008310 1.4e-06 58.2 134 29.1
CAN.G280.16 Capsicum annuum HOM05D006479 ORTHO05D008310 7.0e-06 55.8 134 28.4


User provided reference genes

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