Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 3025.7 1510 100.0
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 2795.0 1546 91.5
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 2447.5 1513 81.1
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 2439.1 1510 81.1
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 2092.0 1514 70.7
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 2086.6 1464 72.7
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 2078.9 1548 69.5
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 2056.6 1515 69.6
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 2036.2 1517 69.1
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 2023.4 1516 68.2
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 2012.3 1533 67.8
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 2004.9 1515 67.9
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 2003.8 1515 68.6
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1994.9 1501 68.5
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1981.1 1621 64.4
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1974.9 1520 68.2
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1970.3 1532 67.2
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1961.8 1534 67.0
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1953.7 1516 66.6
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1946.8 1516 66.6
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1941.4 1613 63.9
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1935.2 1533 66.1
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1933.3 1529 66.4
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1932.5 1483 68.7
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1917.9 1548 65.7
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1886.7 1546 63.6
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1786.2 1516 61.9
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 1781.9 1522 60.8
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 1780.0 1519 60.6
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1776.5 1515 60.7
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1771.5 1408 65.5
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 1763.8 1516 60.8
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 1760.3 1513 60.3
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1759.6 1524 60.4
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1756.1 1521 60.8
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1754.6 1515 61.6
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 1752.6 1521 60.4
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1751.5 1523 60.3
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 1730.3 1522 59.4
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1729.1 1517 60.2
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1726.1 1530 59.0
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1723.8 1525 59.0
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1722.2 1530 58.9
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1718.7 1521 59.3
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1706.8 1352 66.3
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 1705.3 1510 59.8
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1681.8 1561 59.3
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1681.8 1516 58.6
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 1676.4 1514 58.3
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1655.6 1519 57.7
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1654.4 1537 57.4
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1654.0 1519 57.7
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1652.9 1535 57.6
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1648.3 1544 56.6
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 1646.3 1514 57.9
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1621.7 1567 56.8
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1616.3 1530 56.5
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1615.1 1543 56.3
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 1613.2 1515 56.9
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1612.8 1518 56.1
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1612.0 1526 56.8
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1604.3 1521 56.9
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1604.0 1500 56.7
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1598.2 1513 56.8
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1598.2 1516 55.8
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 1592.8 1540 56.2
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1588.9 1521 56.5
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1588.9 1521 56.5
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1585.9 1520 55.4
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1582.4 1536 55.2
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 1577.4 1540 55.8
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 1575.8 1580 54.8
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1575.8 1512 55.4
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 1570.4 1550 55.0
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1566.6 1499 55.4
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1566.2 1486 57.5
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 1562.7 1399 58.5
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 1561.2 1530 55.8
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1560.8 1573 54.9
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 1556.2 1537 55.8
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1540.8 1544 56.1
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1533.5 1525 54.7
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1506.9 1354 60.9
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 0.0e+00 1501.1 1526 53.2
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1496.1 1524 53.5
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 0.0e+00 1494.9 1348 58.7
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1491.1 1512 52.9
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 1444.5 1301 59.2
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 0.0e+00 1413.7 1586 50.3
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1362.8 1454 52.5
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 0.0e+00 1302.0 1541 49.6
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 0.0e+00 1276.2 1548 46.6
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1228.0 1133 59.3
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 0.0e+00 1192.6 994 62.0
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 0.0e+00 1185.6 1550 44.5
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1156.7 1105 57.4
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 5.0e-264 915.6 1634 36.6
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 1.5e-231 807.7 918 48.8
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 2.1e-206 724.2 483 77.4
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 8.9e-205 718.8 483 76.8
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 3.1e-181 640.6 1519 30.8
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 4.5e-164 583.6 1030 37.2
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 3.0e-144 517.7 688 43.8
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 1.8e-120 438.7 396 61.1
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 9.9e-79 300.1 596 33.7
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 5.3e-64 251.1 202 62.4
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 4.8e-57 228.0 169 72.2
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 4.8e-41 174.9 107 73.8
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 9.7e-34 150.6 93 72.0
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 5.0e-30 138.3 101 66.3
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 3.2e-29 135.6 100 64.0
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 4.6e-28 131.7 89 64.0
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 7.9e-28 131.0 81 82.7
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 6.5e-22 111.3 87 64.4
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 6.5e-22 111.3 87 64.4
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 3.0e-19 102.4 67 85.1
Cre17.g739050 Chlamydomonas reinhardtii HOM05D053933 ORTHO05D008092 4.1e-08 65.5 142 33.1
Sabra01G0074000 Salix brachista HOM05D000115 ORTHO05D000464 2.7e-07 62.8 85 49.4


User provided reference genes

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