Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 2.4e-176 622.1 316 100.0
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 2.0e-45 187.2 142 71.8
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 7.4e-45 185.3 126 78.6
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 7.4e-45 185.3 143 69.2
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 2.8e-44 183.3 143 69.2
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 1.4e-43 181.0 143 69.2
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 1.8e-43 180.6 141 69.5
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 1.2e-42 177.9 169 59.8
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 4.5e-42 176.0 141 68.1
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 5.0e-41 172.6 143 66.4
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 6.5e-41 172.2 142 67.6
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 2.5e-40 170.2 126 75.4
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 3.2e-40 169.9 126 73.0
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 3.9e-38 162.9 116 70.7
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 5.1e-38 162.5 185 55.1
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 4.4e-37 159.5 142 64.1
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 5.7e-37 159.1 132 65.2
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 5.7e-37 159.1 114 72.8
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 9.7e-37 158.3 140 61.4
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 4.8e-36 156.0 183 53.0
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 4.8e-36 156.0 115 72.2
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 6.3e-36 155.6 152 57.2
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 1.1e-35 154.8 139 62.6
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 1.4e-35 154.5 115 69.6
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.8e-35 154.1 134 66.4
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 2.4e-35 153.7 130 64.6
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 2.4e-35 153.7 138 58.7
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 2.4e-35 153.7 139 62.6
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 3.1e-35 153.3 133 66.2
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 9.1e-35 151.8 113 68.1
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 9.1e-35 151.8 131 62.6
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 9.1e-35 151.8 109 66.1
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 1.2e-34 151.4 97 81.4
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 1.5e-34 151.0 135 60.0
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 1.5e-34 151.0 147 59.2
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 2.0e-34 150.6 129 65.1
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 2.6e-34 150.2 127 61.4
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 2.6e-34 150.2 127 61.4
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 7.7e-34 148.7 128 64.8
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 7.7e-34 148.7 140 59.3
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 7.7e-34 148.7 131 61.8
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 7.7e-34 148.7 132 61.4
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 1.7e-33 147.5 140 60.0
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 2.2e-33 147.1 136 61.0
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 2.9e-33 146.7 147 57.8
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 3.8e-33 146.4 101 76.2
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 6.5e-33 145.6 145 56.6
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 6.5e-33 145.6 145 56.6
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 6.5e-33 145.6 154 54.5
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 6.5e-33 145.6 154 54.5
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 3.2e-32 143.3 98 67.3
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 9.4e-32 141.7 87 80.5
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 1.2e-31 141.4 111 65.8
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 1.2e-31 141.4 90 78.9
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 1.6e-31 141.0 117 67.5
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 2.1e-31 140.6 87 79.3
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 2.1e-31 140.6 101 69.3
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 2.1e-31 140.6 101 69.3
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 2.1e-31 140.6 101 69.3
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 2.7e-31 140.2 105 68.6
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 2.7e-31 140.2 149 53.7
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 2.7e-31 140.2 103 67.0
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 6.1e-31 139.0 97 71.1
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 1.0e-30 138.3 144 56.9
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 1.4e-30 137.9 118 64.4
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 1.8e-30 137.5 166 48.8
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 2.3e-30 137.1 106 67.9
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 2.3e-30 137.1 129 58.9
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 2.3e-30 137.1 106 67.9
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 2.3e-30 137.1 129 58.9
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 2.3e-30 137.1 96 71.9
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 3.0e-30 136.7 129 58.9
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 6.7e-30 135.6 116 63.8
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 8.8e-30 135.2 87 77.0
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 2.6e-29 133.7 89 74.2
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 3.3e-29 133.3 130 55.4
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 3.3e-29 133.3 151 50.3
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 9.7e-29 131.7 92 69.6
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 2.2e-28 130.6 129 58.1
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 2.2e-28 130.6 104 65.4
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 2.8e-28 130.2 129 58.9
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 3.7e-28 129.8 115 60.9
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 4.8e-28 129.4 90 70.0
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 8.2e-28 128.6 129 57.4
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 8.2e-28 128.6 89 67.4
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 8.2e-28 128.6 115 60.0
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 1.1e-27 128.3 109 64.2
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 1.1e-27 128.3 87 71.3
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 2.4e-27 127.1 109 62.4
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 2.4e-27 127.1 109 62.4
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 2.4e-27 127.1 109 62.4
SalBow4G3209 Salvia bowleyana HOM05D005411 ORTHO05D006463 5.3e-27 125.9 87 71.3
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 7.0e-27 125.6 116 59.5
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 9.1e-27 125.2 133 54.1
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 1.2e-26 124.8 137 48.9
Lj8E221T1 Lonicera japonica HOM05D005411 ORTHO05D006463 1.2e-26 124.8 81 75.3
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 1.6e-26 124.4 106 64.2
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 1.6e-26 124.4 106 64.2
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 2.0e-26 124.0 105 63.8
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 4.5e-26 122.9 114 58.8
SEGI_09083 Sequoiadendron giganteum HOM05D005411 ORTHO05D006463 1.9e-24 117.5 87 65.5
Zm00001eb104990 Zea mays HOM05D005411 ORTHO05D006463 1.9e-24 117.5 84 65.5
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 9.4e-24 115.2 91 67.0
Os07g0483400 Oryza sativa ssp. japonica HOM05D005411 ORTHO05D006463 3.6e-23 113.2 87 60.9
EL10Ac2g04672 Beta vulgaris HOM05D005411 ORTHO05D006463 5.2e-22 109.4 82 62.2
Sc01g0009600 Simmondsia chinensis HOM05D005411 ORTHO05D006463 5.2e-22 109.4 89 60.7
CDE09G0994 Ceratophyllum demersum HOM05D005411 ORTHO05D006463 4.4e-21 106.3 123 48.0
Atru.chr9.2185 Acer truncatum HOM05D005411 ORTHO05D006463 5.7e-21 105.9 89 61.8
Duzib084G0828 Durio zibethinus HOM05D005411 ORTHO05D006463 1.3e-20 104.8 108 55.6
Pp3c11_2200 Physcomitrium patens HOM05D005411 ORTHO05D006463 6.3e-20 102.4 119 50.4
Duzib205G1808 Durio zibethinus HOM05D005411 ORTHO05D006463 2.4e-19 100.5 113 52.2
AagrBONN_evm.TU.Sc2ySwM_369.479 Anthoceros agrestis HOM05D005411 ORTHO05D006463 5.4e-19 99.4 95 51.6
BcaNung00981 Brassica carinata HOM05D005411 ORTHO05D006463 1.2e-18 98.2 117 53.8
Hma1.2p1_0377F.1_g139290 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 2.7e-18 97.1 64 82.8
Potri.003G127900 Populus trichocarpa HOM05D005411 ORTHO05D006463 5.9e-18 95.9 99 56.6
Mapoly0008s0209 Marchantia polymorpha HOM05D005411 ORTHO05D006463 1.0e-17 95.1 81 55.6
BolC5t34770H Brassica oleracea HOM05D005411 ORTHO05D006463 1.3e-17 94.7 67 73.1
SHI07138 Sapria himalayana HOM05D005411 ORTHO05D006463 6.5e-17 92.4 69 66.7
CSS0044618 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 1.5e-16 91.3 113 49.6
Oeu047371.1 Olea europaea HOM05D005411 ORTHO05D006463 7.2e-16 89.0 66 68.2
BcaC01g04135 Brassica carinata HOM05D005411 ORTHO05D006463 8.0e-15 85.5 58 72.4
BcaNung00977 Brassica carinata HOM05D005411 ORTHO05D006463 2.6e-13 80.5 46 78.3
Haze_08589 Corylus avellana HOM05D002462 ORTHO05D002893 3.4e-13 80.1 55 65.5
SMO329G0027 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 1.3e-12 78.2 87 48.3
SMO358G0504 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 1.3e-12 78.2 87 48.3
HPP92_001497 Vanilla planifolia HOM05D005411 ORTHO05D006463 1.1e-11 75.1 68 55.9
Sabra17G0003100 Salix brachista HOM05D005411 ORTHO05D006463 1.4e-11 74.7 87 50.6
Sabra17G0003800 Salix brachista HOM05D005411 ORTHO05D006463 1.4e-11 74.7 87 50.6
Sabra18G0123000 Salix brachista HOM05D005411 ORTHO05D006463 5.4e-11 72.8 87 49.4
Sabra14G0123800 Salix brachista HOM05D005411 ORTHO05D006463 2.0e-10 70.9 87 48.3
BcaB05g22557 Brassica carinata HOM05D002513 ORTHO05D002720 5.9e-10 69.3 91 48.4
Sabra17G0034500 Salix brachista HOM05D005411 ORTHO05D006463 6.6e-09 65.9 114 41.2
Eucgr.H02258 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.2e-07 61.6 81 53.1
C03p44770 Brassica napus HOM05D005411 ORTHO05D006463 8.0e-07 58.9 31 83.9
BolC3t16740H Brassica oleracea HOM05D005411 ORTHO05D006463 8.0e-07 58.9 31 83.9
COL.COLO4_34468 Corchorus olitorius HOM05D005411 ORTHO05D006463 8.0e-07 58.9 88 40.9
Cpa.g.sc537.1 Carica papaya HOM05D005411 ORTHO05D006463 3.0e-06 57.0 111 37.8
CSS0004409 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 4.0e-06 56.6 39 74.4
CSS0027281 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 4.0e-06 56.6 39 74.4
Sabra11G0012500 Salix brachista HOM05D005411 ORTHO05D006463 6.8e-06 55.8 78 46.2


User provided reference genes

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