Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 0.0e+00 1094.7 539 100.0
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 1.2e-300 1035.8 539 93.9
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 1.1e-293 1012.7 536 92.2
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 4.6e-289 997.3 498 98.8
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 4.3e-287 990.7 537 89.8
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 4.1e-285 984.2 537 89.2
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 4.5e-284 980.7 537 88.3
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 5.9e-284 980.3 537 88.3
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 7.6e-284 979.9 539 87.9
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 7.6e-284 979.9 537 88.6
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 5.0e-283 977.2 537 87.9
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 5.0e-283 977.2 537 87.9
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 6.5e-283 976.9 537 87.9
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 6.5e-283 976.9 537 88.1
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 1.4e-282 975.7 537 88.8
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 1.6e-281 972.2 537 88.1
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 1.3e-280 969.1 537 87.7
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 1.8e-280 968.8 531 88.9
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 1.8e-280 968.8 537 87.3
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 1.8e-280 968.8 537 87.2
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 4.3e-279 964.1 537 87.9
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 4.3e-279 964.1 537 87.2
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 7.4e-279 963.4 537 87.5
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 7.4e-279 963.4 539 86.6
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 3.7e-278 961.1 537 87.5
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 3.7e-278 961.1 537 87.5
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 6.3e-278 960.3 537 86.8
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 1.8e-277 958.7 537 87.3
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 3.1e-277 958.0 537 86.6
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 5.3e-277 957.2 537 86.8
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 5.3e-277 957.2 537 87.0
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 5.3e-277 957.2 539 85.7
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 9.1e-277 956.4 539 85.9
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 2.0e-276 955.3 537 86.8
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 2.6e-276 954.9 537 87.0
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 3.4e-276 954.5 537 86.6
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 3.4e-276 954.5 537 86.6
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 3.4e-276 954.5 537 86.6
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 3.4e-276 954.5 537 86.4
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 4.5e-276 954.1 537 85.7
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 5.9e-276 953.7 537 86.4
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 7.7e-276 953.4 537 86.6
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 2.9e-275 951.4 538 86.8
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 3.8e-275 951.0 537 86.2
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 6.5e-275 950.3 537 86.2
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 6.5e-275 950.3 537 85.8
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 8.5e-275 949.9 537 86.0
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 8.5e-275 949.9 531 86.6
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 2.5e-274 948.3 540 84.6
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 1.2e-273 946.0 537 85.8
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 1.2e-273 946.0 537 85.8
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.2e-273 946.0 537 85.8
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 2.1e-273 945.3 544 85.3
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 3.6e-273 944.5 537 85.8
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 6.1e-273 943.7 537 85.5
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 6.1e-273 943.7 539 84.4
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 7.9e-273 943.3 537 85.5
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 1.4e-272 942.6 538 86.1
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 1.8e-272 942.2 531 85.1
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 1.8e-272 942.2 537 85.1
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 1.4e-269 932.6 539 83.9
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 2.4e-269 931.8 537 84.4
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 1.3e-267 926.0 537 84.9
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 1.3e-267 926.0 537 84.5
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 1.4e-266 922.5 537 81.9
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 4.2e-266 921.0 537 81.9
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 7.2e-266 920.2 539 83.3
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 1.0e-264 916.4 539 81.6
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 1.8e-264 915.6 532 82.3
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 3.9e-264 914.4 537 81.6
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 5.2e-264 914.1 539 81.4
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 1.5e-263 912.5 540 81.3
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 2.6e-263 911.8 537 81.4
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 6.3e-262 907.1 537 81.6
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 6.3e-262 907.1 537 79.9
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 6.3e-262 907.1 537 80.1
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 1.4e-261 906.0 537 81.2
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 1.4e-261 906.0 537 81.4
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 9.1e-261 903.3 531 82.1
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 1.2e-260 902.9 531 80.8
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 2.0e-260 902.1 530 81.3
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 2.6e-260 901.7 537 80.1
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 3.5e-260 901.4 535 80.6
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 1.3e-259 899.4 537 80.4
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 2.2e-259 898.7 537 80.6
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 5.0e-259 897.5 537 81.8
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 5.0e-259 897.5 538 80.1
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 1.9e-258 895.6 537 79.3
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 2.5e-258 895.2 537 80.4
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 2.5e-258 895.2 537 81.4
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 2.5e-258 895.2 558 78.1
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 3.2e-258 894.8 537 81.0
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 3.2e-258 894.8 537 80.1
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 7.2e-258 893.6 537 80.6
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 7.2e-258 893.6 537 80.1
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 6.1e-257 890.6 537 80.4
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 6.1e-257 890.6 558 77.4
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 1.4e-256 889.4 537 80.6
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 1.4e-256 889.4 535 79.8
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 1.8e-256 889.0 537 80.6
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 1.2e-255 886.3 535 79.3
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 2.0e-255 885.6 684 68.0
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 1.7e-254 882.5 537 81.8
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 2.4e-253 878.6 537 79.1
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 2.4e-253 878.6 532 79.7
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 5.9e-252 874.0 537 78.8
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 5.0e-251 870.9 529 78.3
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 3.2e-250 868.2 535 79.8
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 5.5e-250 867.5 496 86.1
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 3.0e-248 861.7 495 86.1
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 7.5e-247 857.1 529 77.1
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 4.1e-245 851.3 668 67.5
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 3.5e-236 821.6 541 73.2
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 7.3e-234 813.9 564 71.5
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 2.6e-223 778.9 529 70.1
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 5.8e-223 777.7 533 69.2
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 7.0e-221 770.8 531 68.5
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 8.6e-219 763.8 530 69.8
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 1.2e-215 753.4 537 72.4
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 1.7e-214 749.6 542 66.1
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 7.3e-210 734.2 442 82.4
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 9.9e-207 723.8 533 64.0
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 5.4e-205 718.0 404 83.9
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 5.6e-202 708.0 532 64.8
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 5.1e-195 684.9 527 63.2
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 8.7e-195 684.1 498 67.1
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 6.4e-190 667.9 374 84.5
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 1.3e-185 653.7 422 76.8
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 2.1e-185 652.9 497 67.8
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 7.7e-167 591.3 712 51.1
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 2.8e-145 519.6 301 84.1
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 2.6e-138 496.5 537 51.0
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 4.4e-130 469.2 312 74.4
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 9.2e-120 434.9 541 47.5
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 4.9e-105 386.0 262 72.9
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 2.3e-102 377.1 413 50.4
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 6.2e-84 315.8 186 82.3
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 7.1e-72 275.8 148 89.2
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 6.9e-59 232.6 148 73.6
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 1.4e-43 181.8 142 63.4
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 1.3e-41 175.3 222 44.6
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 2.2e-41 174.5 104 83.7
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 4.7e-39 166.8 95 82.1
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 2.2e-36 157.9 112 73.2
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 6.5e-33 146.4 94 76.6
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 1.4e-19 102.1 97 61.9
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 1.2e-18 99.0 141 48.9
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 5.0e-17 93.6 46 93.5
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 3.6e-15 87.4 59 72.9
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 1.2e-13 82.4 44 90.9
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 1.2e-13 82.4 44 90.9
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 1.5e-13 82.0 45 86.7
RcHm_v2.0_Chr1g0321151 Rosa chinensis HOM05D004282 ORTHO05D022242 2.0e-10 71.6 47 80.9
RcHm_v2.0_Chr7g0219111 Rosa chinensis HOM05D004282 ORTHO05D022242 5.9e-10 70.1 78 60.3
A09p35740 Brassica napus HOM05D004282 ORTHO05D017169 3.8e-09 67.4 40 80.0
A09p59280 Brassica napus HOM05D004282 ORTHO05D017169 3.8e-09 67.4 40 80.0
BraA09t41310Z Brassica rapa HOM05D004282 ORTHO05D017169 3.8e-09 67.4 40 80.0
EL10Ac3g07448 Beta vulgaris HOM05D003983 ORTHO05D004562 8.6e-09 66.2 210 26.7
Ca_07210_v3 Cicer arietinum L. HOM05D004282 ORTHO05D147921 7.2e-08 63.2 46 65.2
Hund19014 Selenicereus undatus HOM05D003983 ORTHO05D004562 9.5e-08 62.8 204 26.5
Ah.04g149470 Amaranthus hybridus HOM05D003983 ORTHO05D004562 2.1e-07 61.6 208 25.0
Lj5A229G54 Lonicera japonica HOM05D001661 ORTHO05D001575 2.1e-07 61.6 102 39.2
A03p47680 Brassica napus HOM05D004282 ORTHO05D017169 4.7e-07 60.5 37 78.4
BraA09t37854Z Brassica rapa HOM05D004282 ORTHO05D017169 4.7e-07 60.5 37 78.4
SGA_v2.0_scaffold43G16453 Striga asiatica HOM05D004282 ORTHO05D404191 8.0e-07 59.7 41 68.3
Mapoly0037s0136 Marchantia polymorpha HOM05D003983 ORTHO05D004562 1.4e-06 58.9 211 26.5
AUR62020869 Chenopodium quinoa HOM05D003983 ORTHO05D004562 1.8e-06 58.5 210 25.2
VMungo0540G1605 Vigna mungo HOM05D001661 ORTHO05D001575 5.2e-06 57.0 102 34.3
Ah.13g077910 Amaranthus hybridus HOM05D007596 ORTHO05D004562 6.8e-06 56.6 123 29.3
Duzib052G1006 Durio zibethinus HOM05D001661 ORTHO05D001575 6.8e-06 56.6 102 36.3


User provided reference genes

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