Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 1.1e-298 1029.2 530 100.0
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 3.7e-283 977.6 559 91.4
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 2.4e-250 868.6 541 83.9
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 3.3e-231 805.1 529 80.0
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 7.7e-196 687.6 460 77.2
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 1.4e-189 666.8 469 73.6
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 2.7e-188 662.5 460 73.7
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 5.9e-188 661.4 469 73.8
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 1.0e-187 660.6 479 72.0
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 1.0e-187 660.6 454 74.7
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 1.0e-187 660.6 460 74.1
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 2.2e-187 659.4 460 74.6
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 8.5e-187 657.5 462 73.8
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 1.5e-186 656.8 460 74.3
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 3.2e-186 655.6 460 74.8
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 2.4e-181 639.4 463 72.1
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 5.4e-181 638.3 463 73.2
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 5.4e-181 638.3 478 70.7
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 5.4e-181 638.3 460 70.4
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 1.6e-180 636.7 462 74.5
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 8.6e-179 630.9 475 68.2
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 8.6e-179 630.9 460 69.8
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.9e-178 629.8 495 68.5
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 5.6e-178 628.2 460 72.0
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 4.7e-177 625.2 481 67.6
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 1.2e-175 620.5 468 70.3
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 4.4e-175 618.6 453 70.2
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 2.7e-172 609.4 462 69.0
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 2.3e-171 606.3 462 69.3
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 6.6e-171 604.7 459 68.0
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.1e-170 604.0 432 71.5
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 1.5e-170 603.6 464 68.8
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.1e-169 599.7 452 68.1
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 4.7e-169 598.6 461 66.8
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 4.7e-169 598.6 460 67.6
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 8.0e-169 597.8 461 66.8
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 1.4e-168 597.0 462 67.7
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.1e-168 595.9 461 66.8
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.2e-167 594.0 489 64.4
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 9.8e-167 590.9 461 67.7
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 1.3e-166 590.5 456 68.4
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 1.3e-166 590.5 473 66.6
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 6.4e-166 588.2 460 66.3
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 8.3e-166 587.8 492 63.4
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.9e-165 586.6 460 67.0
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 2.4e-165 586.3 461 65.7
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 3.2e-165 585.9 475 66.1
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 5.4e-165 585.1 462 66.2
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 4.6e-164 582.0 458 65.1
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 1.3e-163 580.5 466 65.0
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 5.0e-163 578.6 468 65.0
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 5.0e-163 578.6 448 67.2
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 5.0e-163 578.6 467 66.2
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 5.0e-163 578.6 477 65.6
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.1e-162 577.4 462 66.9
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 1.9e-162 576.6 440 67.3
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 4.7e-161 572.0 462 66.7
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 8.1e-161 571.2 461 65.3
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 8.1e-161 571.2 442 67.4
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 1.8e-160 570.1 493 63.5
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 3.4e-159 565.8 479 63.5
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 2.9e-158 562.8 472 62.5
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 3.7e-158 562.4 481 63.2
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.9e-157 560.1 454 63.9
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 1.9e-157 560.1 461 65.1
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 7.1e-157 558.1 454 63.4
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 2.1e-156 556.6 467 64.2
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 2.7e-156 556.2 441 64.2
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 7.8e-156 554.7 467 64.9
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 1.0e-155 554.3 481 62.0
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.3e-155 553.9 452 64.2
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 2.3e-155 553.1 465 64.7
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.1e-154 550.8 459 62.3
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.5e-154 550.4 483 61.3
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 3.3e-154 549.3 478 62.3
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 1.2e-153 547.4 454 63.9
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 6.2e-153 545.0 407 72.2
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 1.1e-152 544.3 460 63.9
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 1.1e-152 544.3 433 66.3
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 3.1e-152 542.7 441 63.3
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 5.2e-152 542.0 458 63.8
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 5.8e-151 538.5 462 63.0
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.3e-150 537.3 419 69.9
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 1.7e-150 537.0 454 61.9
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 1.1e-149 534.3 435 65.7
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 3.2e-149 532.7 457 61.5
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 1.0e-147 527.7 479 58.9
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 8.6e-147 524.6 464 61.4
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 1.6e-145 520.4 588 51.4
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 2.8e-145 519.6 410 67.1
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 3.6e-145 519.2 441 61.0
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 5.2e-144 515.4 467 59.7
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 1.5e-143 513.8 458 61.6
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 3.4e-143 512.7 460 61.1
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 1.3e-142 510.8 494 56.7
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.7e-142 510.4 467 57.8
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 2.9e-142 509.6 455 60.7
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 3.2e-141 506.1 448 59.8
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 1.2e-140 504.2 449 60.1
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 1.6e-140 503.8 511 56.4
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 6.0e-140 501.9 509 55.6
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 7.8e-140 501.5 509 55.6
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 5.1e-139 498.8 459 59.7
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 3.3e-138 496.1 456 59.4
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 2.8e-137 493.0 455 59.3
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 4.8e-137 492.3 444 59.2
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 6.2e-137 491.9 456 58.8
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 8.1e-137 491.5 456 59.2
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 1.4e-136 490.7 461 58.1
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 1.8e-136 490.3 456 59.0
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 1.2e-135 487.6 400 61.8
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 1.5e-135 487.3 452 58.4
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 1.5e-135 487.3 459 59.3
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 5.8e-135 485.3 446 58.7
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 8.4e-134 481.5 421 63.7
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 1.0e-131 474.6 451 58.5
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 1.0e-131 474.6 441 56.7
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 6.7e-131 471.9 454 57.3
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.1e-130 471.1 471 57.3
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 3.3e-130 469.5 461 56.4
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 7.4e-130 468.4 389 63.5
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 1.6e-129 467.2 469 54.8
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 1.1e-128 464.5 464 55.2
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 3.4e-127 459.5 441 56.2
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 1.7e-126 457.2 459 56.0
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 2.3e-123 446.8 454 54.6
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 2.6e-119 433.3 473 52.6
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 5.8e-119 432.2 441 53.7
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 2.1e-116 423.7 473 53.7
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.3e-113 414.5 450 54.4
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 9.3e-109 398.3 396 58.3
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 1.9e-106 390.6 474 47.9
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 9.7e-106 388.3 472 51.1
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 5.1e-99 365.9 410 50.2
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 2.4e-96 357.1 449 44.1
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 9.1e-96 355.1 216 77.3
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.0e-94 351.7 373 55.5
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 1.3e-94 351.3 216 75.9
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 1.7e-94 350.9 447 47.2
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 4.2e-93 346.3 449 48.8
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 3.3e-90 336.7 371 48.0
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 7.4e-90 335.5 328 56.1
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 5.5e-85 319.3 349 49.6
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 3.1e-80 303.5 391 45.0
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 5.3e-80 302.8 222 63.1
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 1.6e-79 301.2 290 51.7
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 7.7e-71 272.3 176 73.3
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 1.2e-60 238.4 237 59.1
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 2.0e-55 221.1 300 47.0
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.0e-54 218.8 157 71.3
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 3.1e-51 207.2 133 69.9
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 4.0e-43 180.3 250 45.2
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 2.6e-42 177.6 369 32.8
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 2.7e-39 167.5 247 35.2
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 4.9e-33 146.7 190 37.4
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 6.4e-33 146.4 95 70.5
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 1.9e-29 134.8 228 42.5
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 3.8e-25 120.6 76 68.4
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.2e-23 115.5 104 66.3
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 3.5e-23 114.0 70 71.4
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 8.4e-17 92.8 56 71.4
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 2.4e-16 91.3 230 27.4
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 4.2e-16 90.5 98 53.1
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 6.7e-14 83.2 43 90.7
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 7.6e-10 69.7 74 48.6
FvH4_4g16331 Fragaria vesca HOM05D004208 ORTHO05D197324 2.2e-09 68.2 117 44.4
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 4.9e-09 67.0 69 53.6
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 1.9e-08 65.1 108 33.3
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 7.9e-07 59.7 73 45.2
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 7.9e-07 59.7 73 45.2
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 7.9e-07 59.7 73 45.2


User provided reference genes

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