Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012191 Carpinus fangiana HOM05D002745 ORTHO05D002945 2.1e-76 288.9 138 100.0
Haze_08826 Corylus avellana HOM05D002745 ORTHO05D002945 1.7e-46 189.5 164 62.2
QL12p032067 Quercus lobata HOM05D002745 ORTHO05D002945 3.6e-20 102.1 171 38.0
Atru.chr9.2137 Acer truncatum HOM05D002745 ORTHO05D002945 7.8e-15 84.3 171 33.3
CiPaw.11G131300 Carya illinoinensis HOM05D002745 ORTHO05D002945 1.2e-12 77.0 165 36.4
Prupe.5G104900 Prunus persica HOM05D002745 ORTHO05D002945 4.7e-12 75.1 165 29.7
Sabra03G0093800 Salix brachista HOM05D002745 ORTHO05D002945 7.5e-10 67.8 39 74.4
CSS0032411 Camellia sinensis var. sinensis HOM05D002745 ORTHO05D002945 1.3e-09 67.0 40 70.0
RcHm_v2.0_Chr7g0196861 Rosa chinensis HOM05D002745 ORTHO05D002945 2.2e-09 66.2 174 29.9
Potri.001G100500 Populus trichocarpa HOM05D002745 ORTHO05D002945 2.9e-09 65.9 39 71.8
Potri.003G131500 Populus trichocarpa HOM05D002745 ORTHO05D002945 3.7e-09 65.5 39 69.2
Thecc.03G284700 Theobroma cacao HOM05D002745 ORTHO05D002945 4.9e-09 65.1 165 28.5
CSS0032449 Camellia sinensis var. sinensis HOM05D002745 ORTHO05D002945 1.4e-08 63.5 42 64.3
Sabra01G0075300 Salix brachista HOM05D002745 ORTHO05D002945 1.4e-08 63.5 39 69.2
Actinidia27369 Actinidia chinensis HOM05D002745 ORTHO05D002945 1.9e-08 63.2 43 62.8
Duzib205G0538 Durio zibethinus HOM05D002745 ORTHO05D002945 1.9e-08 63.2 169 27.2
MD06G1089000 Malus domestica HOM05D002745 ORTHO05D002945 3.2e-08 62.4 47 57.4
Manes.01G058300 Manihot esculenta HOM05D002745 ORTHO05D002945 4.1e-08 62.0 39 64.1
SGA_v2.0_scaffold1534G53980 Striga asiatica HOM05D002745 ORTHO05D002945 4.1e-08 62.0 40 57.5
Gohir.A12G234200 Gossypium hirsutum HOM05D002745 ORTHO05D002945 7.1e-08 61.2 47 57.4
Gohir.D12G233100 Gossypium hirsutum HOM05D002745 ORTHO05D002945 7.1e-08 61.2 47 57.4
Actinidia33738 Actinidia chinensis HOM05D002745 ORTHO05D002945 9.2e-08 60.8 42 61.9
Hma1.2p1_0216F.1_g090940 Hydrangea macrophylla HOM05D002745 ORTHO05D002945 1.2e-07 60.5 52 53.8
Migut.E01200 Erythranthe guttata HOM05D002745 ORTHO05D002945 1.6e-07 60.1 42 54.8
Gorai.008G249500 Gossypium raimondii HOM05D002745 ORTHO05D002945 1.6e-07 60.1 47 55.3
Medtr5g010050 Medicago truncatula HOM05D002745 ORTHO05D002945 2.1e-07 59.7 39 59.0
Psat2g182960 Pisum sativum HOM05D002745 ORTHO05D002945 2.1e-07 59.7 47 51.1
THA.LOC104817848 Tarenaya hassleriana HOM05D002745 ORTHO05D002945 2.7e-07 59.3 39 66.7
TPR.G6622 Trifolium pratense HOM05D002745 ORTHO05D002945 2.7e-07 59.3 39 56.4
Oeu049859.2 Olea europaea HOM05D002745 ORTHO05D002945 4.6e-07 58.5 42 54.8
Lalb_Chr09g0320851 Lupinus albus HOM05D002745 ORTHO05D002945 6.0e-07 58.2 39 59.0
AT5G41470 Arabidopsis thaliana HOM05D002745 ORTHO05D002945 7.8e-07 57.8 39 61.5
COL.COLO4_03661 Corchorus olitorius HOM05D002745 ORTHO05D002945 1.3e-06 57.0 44 59.1
Dinv38911 Davidia involucrata HOM05D002745 ORTHO05D002945 1.3e-06 57.0 40 62.5
Carub.0007s3403 Capsella rubella HOM05D002745 ORTHO05D002945 2.3e-06 56.2 39 59.0
Sc22g0005360 Simmondsia chinensis HOM05D002745 ORTHO05D002945 2.3e-06 56.2 39 56.4
AL7G47950 Arabidopsis lyrata HOM05D002745 ORTHO05D002945 3.0e-06 55.8 39 59.0
Cc03_g15810 Coffea canephora HOM05D002745 ORTHO05D002945 3.0e-06 55.8 39 56.4
Cc08_g15110 Coffea canephora HOM05D002745 ORTHO05D002945 3.0e-06 55.8 39 56.4
PSO063G0080 Papaver somniferum HOM05D002745 ORTHO05D002945 3.0e-06 55.8 42 52.4
PSO832G1614 Papaver somniferum HOM05D002745 ORTHO05D002945 3.0e-06 55.8 42 52.4
ECA233G2193 Erigeron canadensis HOM05D002745 ORTHO05D002945 5.1e-06 55.1 48 50.0
Ah.07g196580 Amaranthus hybridus HOM05D002745 ORTHO05D002945 8.6e-06 54.3 39 56.4
Sp7g00520 Schrenkiella parvula HOM05D002745 ORTHO05D002945 8.6e-06 54.3 39 59.0
TAR374G0018 Trochodendron aralioides HOM05D002745 ORTHO05D002945 8.6e-06 54.3 40 60.0


User provided reference genes

Program Settings