Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 4.1e-188 661.8 479 100.0
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 3.1e-159 565.8 492 89.6
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 5.1e-146 521.9 481 72.1
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 2.1e-128 463.4 479 76.8
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 8.4e-125 451.4 482 75.5
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 1.1e-108 397.9 482 50.0
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 2.5e-108 396.7 492 69.9
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 5.5e-108 395.6 482 50.4
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 7.9e-107 391.7 481 49.9
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 1.0e-106 391.3 483 49.5
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 1.1e-105 387.9 481 71.3
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 1.1e-105 387.9 477 50.3
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 3.3e-105 386.3 515 68.2
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 5.7e-105 385.6 482 48.5
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 7.4e-105 385.2 487 70.0
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 1.6e-104 384.0 489 69.9
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 6.3e-104 382.1 505 67.9
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 1.1e-103 381.3 495 68.9
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 3.1e-103 379.8 499 69.5
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 9.0e-103 378.3 495 68.7
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 4.5e-102 375.9 491 48.3
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 5.9e-102 375.6 483 48.2
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 7.7e-102 375.2 498 66.3
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 1.0e-101 374.8 485 49.1
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 1.3e-101 374.4 476 49.4
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 1.7e-101 374.0 482 48.1
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 2.2e-101 373.6 488 67.8
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 5.0e-101 372.5 455 49.5
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 8.5e-101 371.7 488 48.0
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 9.4e-100 368.2 480 70.2
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 9.4e-100 368.2 485 47.8
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.1e-99 367.1 480 72.1
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 2.1e-99 367.1 497 69.2
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 2.7e-99 366.7 478 46.2
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 2.7e-99 366.7 480 72.1
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 3.6e-99 366.3 523 67.7
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 1.0e-98 364.8 518 67.8
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 2.3e-98 363.6 481 46.8
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 5.1e-98 362.5 484 69.8
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 2.0e-97 360.5 460 71.3
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 7.4e-97 358.6 487 66.5
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 6.3e-96 355.5 452 64.4
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 6.9e-95 352.1 480 52.3
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 1.5e-94 350.9 481 66.3
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 1.3e-93 347.8 485 67.6
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 8.5e-93 345.1 482 45.2
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 1.1e-92 344.7 522 43.3
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 1.1e-92 344.7 482 54.1
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 1.4e-92 344.4 483 46.2
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 1.9e-92 344.0 456 48.7
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 1.9e-92 344.0 486 68.5
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 7.2e-92 342.0 495 56.4
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 4.7e-91 339.3 478 46.4
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 1.4e-90 337.8 484 60.3
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 3.0e-90 336.7 484 48.8
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 3.9e-90 336.3 457 47.0
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 3.3e-89 333.2 485 45.6
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 5.7e-89 332.4 482 56.6
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 7.4e-89 332.0 484 45.0
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 7.4e-89 332.0 504 43.7
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 7.4e-89 332.0 467 45.4
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 2.2e-88 330.5 484 45.0
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 3.7e-88 329.7 488 53.9
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 6.3e-88 328.9 455 69.0
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 8.2e-88 328.6 460 44.8
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 2.4e-87 327.0 492 44.3
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 9.1e-87 325.1 482 44.0
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 9.1e-87 325.1 488 57.2
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 3.5e-86 323.2 485 43.1
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 4.5e-86 322.8 438 46.1
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 2.9e-85 320.1 482 53.9
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 5.5e-84 315.8 450 51.1
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 7.2e-84 315.5 530 58.1
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 2.7e-83 313.5 479 48.2
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 2.7e-83 313.5 479 48.2
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 3.6e-83 313.2 456 45.0
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 1.4e-82 311.2 455 48.6
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 2.3e-82 310.5 488 50.4
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 3.3e-81 306.6 479 54.1
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 4.8e-80 302.8 491 43.4
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 6.3e-80 302.4 480 53.8
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 1.4e-79 301.2 483 61.3
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 5.3e-79 299.3 508 48.2
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 5.3e-79 299.3 414 45.7
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 5.3e-79 299.3 479 42.6
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 7.0e-79 298.9 409 45.5
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 2.0e-78 297.4 479 53.0
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 2.7e-78 297.0 496 55.0
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 4.5e-78 296.2 483 41.2
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 5.0e-77 292.7 480 52.5
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 1.9e-76 290.8 487 41.9
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 3.2e-76 290.0 437 47.1
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 5.5e-76 289.3 499 51.5
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 5.2e-74 282.7 512 50.6
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 3.4e-73 280.0 483 57.6
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 1.3e-72 278.1 481 50.3
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 4.8e-72 276.2 511 39.1
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 1.8e-71 274.2 415 42.9
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 7.0e-71 272.3 581 49.9
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 3.5e-70 270.0 382 73.8
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 5.9e-70 269.2 480 44.2
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 2.2e-69 267.3 483 54.5
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 8.5e-69 265.4 593 49.7
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 9.4e-68 261.9 521 53.2
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 9.4e-68 261.9 521 53.2
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 6.8e-66 255.8 413 48.7
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 8.8e-66 255.4 492 40.2
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 5.7e-65 252.7 438 37.9
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 1.1e-63 248.4 487 46.2
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 1.6e-62 244.6 490 51.0
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 1.6e-62 244.6 479 37.8
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 2.0e-62 244.2 503 46.9
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 3.5e-62 243.4 504 46.2
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.7e-61 241.1 181 71.3
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 9.5e-60 235.3 458 36.9
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 4.4e-57 226.5 417 45.8
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 1.7e-56 224.6 429 39.9
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 4.9e-56 223.0 492 35.8
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 1.6e-54 218.0 149 75.2
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 7.8e-54 215.7 142 76.1
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 6.2e-51 206.1 138 77.5
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 2.2e-48 197.6 189 60.3
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 9.2e-47 192.2 191 57.1
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 2.1e-38 164.5 113 76.1
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 1.4e-34 151.8 443 31.6
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 4.0e-34 150.2 492 36.8
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 1.3e-29 135.2 162 48.8
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 1.6e-22 111.7 74 77.0
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 6.0e-22 109.8 76 69.7
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 5.6e-20 103.2 397 27.7
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 3.2e-15 87.4 109 44.0
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 1.8e-13 81.6 84 52.4
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 3.3e-12 77.4 92 40.2


User provided reference genes

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