Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012052 Carpinus fangiana HOM05D006581 ORTHO05D007870 0.0e+00 1604.3 826 100.0
Haze_09013 Corylus avellana HOM05D006581 ORTHO05D007870 0.0e+00 1544.3 826 97.1
QL12p015968 Quercus lobata HOM05D006581 ORTHO05D007870 0.0e+00 1310.8 826 82.1
CiPaw.08G049100 Carya illinoinensis HOM05D006581 ORTHO05D007870 0.0e+00 1286.2 827 80.9
GSVIVG01019912001 Vitis vinifera HOM05D006581 ORTHO05D007870 0.0e+00 1155.6 830 72.3
Prupe.1G071100 Prunus persica HOM05D006581 ORTHO05D007870 0.0e+00 1152.1 829 72.3
RcHm_v2.0_Chr4g0398711 Rosa chinensis HOM05D006581 ORTHO05D007870 0.0e+00 1146.3 829 71.8
FAN12G3574 Fragaria x ananassa HOM05D006581 ORTHO05D007870 0.0e+00 1129.8 830 69.9
FvH4_4g06790 Fragaria vesca HOM05D006581 ORTHO05D007870 0.0e+00 1127.9 830 69.9
MD15G1394600 Malus domestica HOM05D006581 ORTHO05D007870 0.0e+00 1120.9 832 71.3
Atru.chr12.1085 Acer truncatum HOM05D006581 ORTHO05D007870 0.0e+00 1097.4 821 69.7
Potri.008G016000 Populus trichocarpa HOM05D006581 ORTHO05D007870 0.0e+00 1091.6 803 69.7
Ciclev10014277m.g Citrus clementina HOM05D006581 ORTHO05D007870 0.0e+00 1090.1 820 68.4
Actinidia27421 Actinidia chinensis HOM05D006581 ORTHO05D007870 0.0e+00 1083.6 828 68.7
Sabra08G0009700 Salix brachista HOM05D006581 ORTHO05D007870 1.7e-311 1072.4 812 67.7
Duzib128G1875 Durio zibethinus HOM05D006581 ORTHO05D007870 2.5e-310 1068.5 834 66.3
CANSAT78G1168 Cannabis sativa HOM05D006581 ORTHO05D007870 8.9e-308 1060.1 817 67.3
Thecc.10G119000 Theobroma cacao HOM05D006581 ORTHO05D007870 1.9e-305 1052.4 832 65.6
Hma1.2p1_0017F.1_g011220 Hydrangea macrophylla HOM05D006581 ORTHO05D007870 1.6e-304 1049.3 828 67.8
Gorai.N007200 Gossypium raimondii HOM05D006581 ORTHO05D007870 2.1e-304 1048.9 831 66.1
Gohir.D06G178000 Gossypium hirsutum HOM05D006581 ORTHO05D007870 5.1e-303 1044.3 831 65.7
Rhsim07G0097400 Rhododendron simsii HOM05D006581 ORTHO05D007870 8.6e-303 1043.5 827 66.5
Lj8A253T47 Lonicera japonica HOM05D006581 ORTHO05D007870 2.5e-302 1042.0 812 66.5
TAR629G0084 Trochodendron aralioides HOM05D006581 ORTHO05D007870 2.5e-302 1042.0 831 67.4
Gohir.A06G170200 Gossypium hirsutum HOM05D006581 ORTHO05D007870 4.3e-302 1041.2 833 65.8
Sed0002136 Sechium edule HOM05D006581 ORTHO05D007870 6.4e-298 1027.3 832 64.3
TWI38G0425 Tripterygium wilfordii HOM05D006581 ORTHO05D007870 3.3e-294 1015.0 809 64.6
ClCG00G000120 Citrullus lanatus HOM05D006581 ORTHO05D007870 7.3e-294 1013.8 847 62.8
ClCG10G003370 Citrullus lanatus HOM05D006581 ORTHO05D007870 3.6e-293 1011.5 847 62.7
Nn3g19980 Nelumbo nucifera HOM05D006581 ORTHO05D007870 5.8e-291 1004.2 828 62.9
Cpa.g.sc33.130 Carica papaya HOM05D006581 ORTHO05D007870 1.3e-290 1003.0 793 65.2
CsaV3_3G003400 Cucumis sativus L. HOM05D006581 ORTHO05D007870 3.2e-289 998.4 820 63.0
Oeu001905.1 Olea europaea HOM05D006581 ORTHO05D007870 1.2e-288 996.5 799 65.6
MELO3C014006.2 Cucumis melo HOM05D006581 ORTHO05D007870 1.3e-287 993.0 820 63.3
FAN07G0243 Fragaria x ananassa HOM05D006581 ORTHO05D007870 5.6e-286 987.6 830 63.6
Lalb_Chr01g0006991 Lupinus albus HOM05D006581 ORTHO05D007870 3.1e-284 981.9 829 61.9
Peaxi162Scf00620g00237 Petunia axillaris HOM05D006581 ORTHO05D007870 6.4e-282 974.2 826 61.4
Cc03_g06340 Coffea canephora HOM05D006581 ORTHO05D007870 1.4e-281 973.0 798 63.7
Nitab4.5_0010186g0020 Nicotiana tabacum HOM05D006581 ORTHO05D007870 4.6e-280 968.0 828 61.0
Lj3g0012962 Lotus japonicus HOM05D006581 ORTHO05D007870 6.7e-279 964.1 829 61.0
Solyc08g079810.4 Solanum lycopersicum HOM05D006581 ORTHO05D007870 6.7e-279 964.1 828 60.6
Sopen08g028170 Solanum pennellii HOM05D006581 ORTHO05D007870 3.3e-278 961.8 828 60.7
Manes.10G064500 Manihot esculenta HOM05D006581 ORTHO05D007870 4.8e-277 958.0 808 63.7
PGSC0003DMG400003942 Solanum tuberosum HOM05D006581 ORTHO05D007870 4.0e-276 954.9 828 60.3
Aqoxy7G00548 Aquilegia oxysepala HOM05D006581 ORTHO05D007870 1.2e-275 953.4 833 60.3
Nitab4.5_0005167g0030 Nicotiana tabacum HOM05D006581 ORTHO05D007870 8.4e-274 947.2 828 60.0
ClCG00G004880 Citrullus lanatus HOM05D006581 ORTHO05D007870 1.2e-272 943.3 781 62.7
arahy.Tifrunner.gnm1.ann1.J373DC Arachis hypogaea HOM05D006581 ORTHO05D007870 3.5e-272 941.8 828 59.4
arahy.Tifrunner.gnm1.ann1.MU0C19 Arachis hypogaea HOM05D006581 ORTHO05D007870 3.0e-271 938.7 830 59.3
DCAR_000885 Daucus carota HOM05D006581 ORTHO05D007870 3.3e-270 935.3 798 62.2
Ca_14132_v3 Cicer arietinum L. HOM05D006581 ORTHO05D007870 1.6e-269 932.9 833 59.4
Lsat_1_v5_gn_8_138880 Lactuca sativa HOM05D006581 ORTHO05D007870 2.1e-269 932.6 805 61.6
Hund14684 Selenicereus undatus HOM05D006581 ORTHO05D007870 1.1e-268 930.2 832 58.7
ECA233G4444 Erigeron canadensis HOM05D006581 ORTHO05D007870 6.9e-268 927.5 814 60.6
TPR.G5149 Trifolium pratense HOM05D006581 ORTHO05D007870 3.5e-264 915.2 830 58.8
PSO782G3179 Papaver somniferum HOM05D006581 ORTHO05D007870 5.1e-263 911.4 821 59.7
Migut.E01071 Erythranthe guttata HOM05D006581 ORTHO05D007870 2.2e-261 906.0 829 59.0
PSO478G1557 Papaver somniferum HOM05D006581 ORTHO05D007870 2.4e-260 902.5 819 59.7
EL10Ac5g12666 Beta vulgaris HOM05D006581 ORTHO05D007870 3.8e-258 895.2 841 56.7
COL.COLO4_10009 Corchorus olitorius HOM05D006581 ORTHO05D007870 1.1e-257 893.6 833 58.3
Psat7g256920 Pisum sativum HOM05D006581 ORTHO05D007870 1.4e-257 893.3 832 57.6
Medtr3g010350 Medicago truncatula HOM05D006581 ORTHO05D007870 3.9e-255 885.2 808 58.3
Lj8C252T14 Lonicera japonica HOM05D006581 ORTHO05D007870 8.2e-253 877.5 811 58.3
MBI12_g26094_MAGBIO Magnolia biondii HOM05D006581 ORTHO05D007870 2.1e-248 862.8 814 57.9
Ah.02g116280 Amaranthus hybridus HOM05D006581 ORTHO05D007870 2.3e-247 859.4 819 56.5
THA.LOC104812128 Tarenaya hassleriana HOM05D006581 ORTHO05D007870 3.9e-247 858.6 812 56.9
SGA_v2.0_scaffold196G40922 Striga asiatica HOM05D006581 ORTHO05D007870 1.3e-245 853.6 801 57.2
HanXRQChr04g0124681 Helianthus annuus HOM05D006581 ORTHO05D007870 3.8e-242 842.0 735 61.2
Sp5g29170 Schrenkiella parvula HOM05D006581 ORTHO05D007870 9.4e-241 837.4 821 56.8
BraA07t31529Z Brassica rapa HOM05D006581 ORTHO05D007870 2.7e-240 835.9 803 56.7
Aa31LG4G4270 Aethionema arabicum HOM05D006581 ORTHO05D007870 1.8e-239 833.2 833 56.2
A07p39830 Brassica napus HOM05D006581 ORTHO05D007870 1.8e-239 833.2 815 56.1
AT1G73970 Arabidopsis thaliana HOM05D006581 ORTHO05D007870 3.9e-239 832.0 814 55.7
CARHR067090 Cardamine hirsuta HOM05D006581 ORTHO05D007870 3.9e-239 832.0 804 56.3
Thhalv10018136m.g Eutrema salsugineum HOM05D006581 ORTHO05D007870 3.9e-239 832.0 815 56.3
Dinv39047 Davidia involucrata HOM05D006581 ORTHO05D007870 1.5e-238 830.1 650 67.8
C06p48090 Brassica napus HOM05D003462 ORTHO05D007870 5.7e-238 828.2 805 56.9
AL2G33810 Arabidopsis lyrata HOM05D006581 ORTHO05D007870 1.3e-237 827.0 818 55.9
Dinv37725 Davidia involucrata HOM05D006581 ORTHO05D007870 1.3e-237 827.0 611 71.5
BolC6t39844H Brassica oleracea HOM05D006581 ORTHO05D007870 3.7e-237 825.5 804 56.6
Glyma.06G323200 Glycine max HOM05D006581 ORTHO05D007870 4.8e-237 825.1 839 55.2
AUR62004835 Chenopodium quinoa HOM05D006581 ORTHO05D007870 3.5e-235 818.9 742 57.5
AUR62040923 Chenopodium quinoa HOM05D006581 ORTHO05D007870 4.5e-235 818.5 747 57.6
FAN17G3070 Fragaria x ananassa HOM05D006581 ORTHO05D007870 2.9e-234 815.8 607 68.7
Carub.0002s2075 Capsella rubella HOM05D006581 ORTHO05D007870 4.0e-231 805.4 818 54.8
Phvul.005G003000 Phaseolus vulgaris HOM05D006581 ORTHO05D007870 2.8e-229 799.3 838 53.2
BcaC08g46826 Brassica carinata HOM05D006581 ORTHO05D007870 3.1e-228 795.8 819 54.8
VMungo1080G1314 Vigna mungo HOM05D006581 ORTHO05D007870 9.1e-228 794.3 812 53.7
SalBow7G1099 Salvia bowleyana HOM05D006581 ORTHO05D007870 1.9e-225 786.6 792 55.2
SHI19174 Sapria himalayana HOM05D006581 ORTHO05D007870 3.5e-219 765.8 822 51.7
unitig_26.g9687 Utricularia gibba HOM05D006581 ORTHO05D007870 2.0e-206 723.4 820 48.7
Hma1.2p1_0017F.1_g011230 Hydrangea macrophylla HOM05D006581 ORTHO05D007870 1.3e-197 694.1 551 67.5
MBI12_g05899_MAGBIO Magnolia biondii HOM05D006581 ORTHO05D007870 4.7e-192 675.6 740 54.2
Sc01g0009010 Simmondsia chinensis HOM05D006581 ORTHO05D007870 1.5e-185 654.1 610 57.9
CDE05G1723 Ceratophyllum demersum HOM05D006581 ORTHO05D007870 2.4e-180 636.7 814 44.2
ATR0757G052 Amborella trichopoda HOM05D006581 ORTHO05D007870 2.3e-178 630.2 799 46.1
Eucgr.E00519 Eucalyptus grandis HOM05D006581 ORTHO05D007870 1.5e-177 627.5 580 57.4
CSS0016486 Camellia sinensis var. sinensis HOM05D006581 ORTHO05D007870 4.3e-177 625.9 482 68.5
vmacro14025 Vaccinium macrocarpon HOM05D006581 ORTHO05D007870 3.8e-157 559.7 424 68.4
Zm00001eb230550 Zea mays HOM05D006581 ORTHO05D007870 5.3e-151 539.3 765 41.6
Hma1.2p1_0138F.1_g062900 Hydrangea macrophylla HOM05D006581 ORTHO05D007870 9.7e-145 518.5 756 45.4
Medtr4g059740 Medicago truncatula HOM05D006581 ORTHO05D007870 6.3e-136 489.2 527 51.6
Ciclev10017584m.g Citrus clementina HOM05D006581 ORTHO05D007870 2.4e-127 460.7 343 69.4
Ciclev10006485m.g Citrus clementina HOM05D006581 ORTHO05D007870 1.8e-114 417.9 310 69.0
CSS0046982 Camellia sinensis var. sinensis HOM05D006581 ORTHO05D007870 7.5e-113 412.5 485 53.4
Ciclev10006576m.g Citrus clementina HOM05D006581 ORTHO05D007870 8.9e-98 362.5 305 63.3
Mapoly0035s0119 Marchantia polymorpha HOM05D006581 ORTHO05D007870 9.5e-92 342.4 914 29.6
Migut.J01229 Erythranthe guttata HOM05D006581 ORTHO05D007870 1.5e-89 335.1 264 64.8
CSS0026570 Camellia sinensis var. sinensis HOM05D006581 ORTHO05D007870 7.0e-87 326.2 224 73.7
Pp3c5_4510 Physcomitrium patens HOM05D006581 ORTHO05D007870 4.6e-86 323.6 883 29.1
Eucgr.E00518 Eucalyptus grandis HOM05D006581 ORTHO05D007870 2.8e-75 287.7 223 67.3
SMO118G0399 Selaginella moellendorffii HOM05D006581 ORTHO05D007870 1.3e-69 268.9 816 28.1
Os02g0123400 Oryza sativa ssp. japonica HOM05D006581 ORTHO05D007870 5.8e-65 253.4 528 33.5
SEGI_20261 Sequoiadendron giganteum HOM05D006581 ORTHO05D007870 4.8e-59 233.8 272 47.1
CSS0037330 Camellia sinensis var. sinensis HOM05D006581 ORTHO05D007870 5.1e-53 213.8 224 53.1
SEGI_01852 Sequoiadendron giganteum HOM05D006581 ORTHO05D007870 3.6e-51 207.6 585 30.8
AagrBONN_evm.TU.Sc2ySwM_228.3501 Anthoceros agrestis HOM05D006581 ORTHO05D007870 4.5e-49 200.7 539 28.0
Sabra10G0190600 Salix brachista HOM05D006581 ORTHO05D007870 3.4e-33 147.9 214 45.3
Lj8P252T34 Lonicera japonica HOM05D006581 ORTHO05D007870 1.8e-21 109.0 86 65.1
CBR_g52136 Chara braunii HOM05D006581 ORTHO05D007870 1.4e-18 99.4 656 21.6


User provided reference genes

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