Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 6.3e-115 417.5 224 100.0
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 3.5e-113 411.8 224 98.7
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 2.5e-87 325.9 229 81.2
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 4.4e-84 315.1 231 79.2
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 4.4e-84 315.1 231 79.2
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 1.3e-80 303.5 235 73.6
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 6.6e-80 301.2 236 72.5
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 1.1e-79 300.4 233 75.1
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 2.5e-79 299.3 234 72.6
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.2e-78 297.0 237 71.7
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 1.4e-77 293.5 239 70.3
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 1.8e-77 293.1 234 71.8
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 1.8e-77 293.1 233 73.4
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 2.3e-77 292.7 236 73.3
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 6.8e-77 291.2 234 71.4
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 6.8e-77 291.2 225 75.6
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.5e-76 290.0 236 72.9
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 2.0e-76 289.7 236 72.9
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 2.0e-76 289.7 234 72.2
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.6e-76 289.3 233 70.4
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 7.5e-76 287.7 236 72.5
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 1.3e-75 287.0 225 74.2
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 2.2e-75 286.2 263 67.7
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 3.7e-75 285.4 233 70.4
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 4.9e-75 285.0 232 69.0
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 1.1e-74 283.9 237 69.6
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.1e-74 283.9 242 68.2
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 1.9e-74 283.1 223 74.0
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 1.9e-74 283.1 234 70.5
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 2.4e-74 282.7 231 71.4
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 3.2e-74 282.3 236 68.2
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 4.1e-74 282.0 228 70.2
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 9.2e-74 280.8 240 67.5
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 2.7e-73 279.3 223 73.1
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 3.5e-73 278.9 253 65.6
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 4.6e-73 278.5 230 70.9
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 7.8e-73 277.7 231 71.4
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 1.0e-72 277.3 240 67.9
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 1.3e-72 276.9 223 73.1
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 3.0e-72 275.8 233 67.4
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 5.0e-72 275.0 240 67.1
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 6.6e-72 274.6 239 67.8
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 1.5e-71 273.5 245 66.1
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 1.9e-71 273.1 203 73.9
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 3.3e-71 272.3 234 67.1
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 3.3e-71 272.3 234 67.1
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 4.3e-71 271.9 229 69.0
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 1.2e-70 270.4 236 66.1
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 1.6e-70 270.0 180 81.1
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 2.1e-70 269.6 236 66.1
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 2.8e-70 269.2 234 66.7
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 2.8e-70 269.2 231 67.1
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 3.6e-70 268.9 237 67.5
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 3.6e-70 268.9 241 66.8
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 4.7e-70 268.5 231 66.2
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 4.7e-70 268.5 180 81.7
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 6.2e-70 268.1 182 81.9
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 8.1e-70 267.7 235 66.8
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 1.4e-69 266.9 234 66.2
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 1.8e-69 266.5 234 66.2
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 3.1e-69 265.8 180 80.0
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 5.2e-69 265.0 180 80.6
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 5.2e-69 265.0 271 60.5
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 6.8e-69 264.6 190 78.4
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 6.8e-69 264.6 227 67.0
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 8.9e-69 264.2 228 68.4
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 2.0e-68 263.1 237 66.2
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 2.0e-68 263.1 181 79.6
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 2.6e-68 262.7 235 65.5
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 3.4e-68 262.3 217 69.1
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 9.8e-68 260.8 235 65.1
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 1.3e-67 260.4 190 75.8
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 6.4e-67 258.1 235 64.3
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 2.4e-66 256.1 249 65.5
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 2.4e-66 256.1 187 74.9
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 2.4e-66 256.1 194 73.7
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 5.4e-66 255.0 236 64.8
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 7.1e-66 254.6 182 78.6
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 1.6e-65 253.4 235 63.8
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 2.1e-65 253.1 236 61.9
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 4.6e-65 251.9 199 68.8
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 6.0e-65 251.5 236 62.3
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 6.0e-65 251.5 225 62.7
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 1.3e-64 250.4 236 63.1
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 3.0e-64 249.2 250 60.8
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 6.6e-64 248.1 231 63.2
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 1.1e-63 247.3 236 62.7
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 1.5e-63 246.9 183 73.2
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 2.5e-63 246.1 187 71.7
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 4.3e-63 245.4 168 78.6
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 1.5e-60 236.9 244 58.6
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 2.0e-60 236.5 198 65.2
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 2.6e-60 236.1 230 62.6
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 2.6e-60 236.1 230 62.6
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 4.4e-60 235.3 195 67.2
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 5.8e-60 235.0 212 64.6
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 1.3e-59 233.8 181 72.4
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 2.2e-59 233.0 187 69.5
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 2.2e-59 233.0 154 81.8
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 7.1e-58 228.0 195 68.2
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 2.3e-56 223.0 186 66.1
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 5.2e-53 211.8 204 60.3
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.0e-52 209.9 233 57.1
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 3.4e-52 209.1 232 56.0
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 9.9e-52 207.6 175 65.7
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 1.4e-50 203.8 131 82.4
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 2.3e-48 196.4 180 61.1
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 9.6e-47 191.0 233 50.2
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 2.4e-42 176.4 255 49.4
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 2.4e-42 176.4 125 76.0
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 1.2e-41 174.1 140 64.3
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 1.6e-38 163.7 173 55.5
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 5.3e-37 158.7 209 48.8
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.9e-35 152.9 100 78.0
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.9e-34 150.2 100 78.0
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 4.2e-34 149.1 100 77.0
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 6.7e-32 141.7 93 76.3
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 4.0e-29 132.5 219 45.2
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 4.9e-27 125.6 206 41.3
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 1.1e-26 124.4 123 52.0
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 2.5e-26 123.2 97 72.2
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.6e-25 120.6 250 36.0
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 2.7e-25 119.8 98 64.3
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.7e-25 119.8 73 80.8
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 7.9e-25 118.2 115 54.8
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 8.7e-24 114.8 140 48.6
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 1.9e-23 113.6 79 67.1
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 5.7e-23 112.1 251 37.1
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 4.8e-22 109.0 249 36.1
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 6.3e-22 108.6 249 35.7
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.8e-21 107.1 186 42.5
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 3.1e-21 106.3 153 45.1
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 5.0e-19 99.0 82 64.6
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 5.1e-16 89.0 134 41.0
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 3.1e-13 79.7 157 37.6
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 2.6e-12 76.6 122 41.8
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 2.1e-09 67.0 51 68.6
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 1.8e-08 63.9 53 69.8
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 2.3e-08 63.5 108 44.4
Actinidia02087 Actinidia chinensis HOM05D005346 ORTHO05D007051 4.8e-06 55.8 53 58.5


User provided reference genes

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