Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012011 Carpinus fangiana HOM05D007590 ORTHO05D007875 2.4e-49 198.7 118 100.0
CiPaw.12G082900 Carya illinoinensis HOM05D007590 ORTHO05D007875 6.2e-29 131.0 119 63.0
CiPaw.11G121300 Carya illinoinensis HOM05D007590 ORTHO05D007875 3.8e-26 121.7 118 63.6
QL02p030422 Quercus lobata HOM05D007590 ORTHO05D007875 1.9e-25 119.4 119 63.0
Manes.02G009900 Manihot esculenta HOM05D007590 ORTHO05D007875 7.1e-25 117.5 117 56.4
Hma1.2p1_1746F.1_g300410 Hydrangea macrophylla HOM05D007590 ORTHO05D007875 9.3e-25 117.1 120 56.7
Rhsim02G0243500 Rhododendron simsii HOM05D007590 ORTHO05D007875 2.7e-24 115.5 119 58.0
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 1.7e-23 112.8 117 55.6
Prupe.5G120200 Prunus persica HOM05D007590 ORTHO05D007875 2.3e-23 112.5 119 56.3
TAR375G1006 Trochodendron aralioides HOM05D007590 ORTHO05D007875 3.0e-23 112.1 116 55.2
TAR629G1835 Trochodendron aralioides HOM05D007590 ORTHO05D007875 3.9e-23 111.7 116 55.2
TAR636G1032 Trochodendron aralioides HOM05D007590 ORTHO05D007875 3.3e-22 108.6 116 56.9
CSS0045762 Camellia sinensis var. sinensis HOM05D007590 ORTHO05D007875 5.6e-22 107.8 120 55.0
TAR374G1746 Trochodendron aralioides HOM05D007590 ORTHO05D007875 5.6e-22 107.8 120 55.8
TAR629G2201 Trochodendron aralioides HOM05D007590 ORTHO05D007875 3.6e-21 105.1 118 55.1
Manes.02G010000 Manihot esculenta HOM05D007590 ORTHO05D007875 4.8e-21 104.8 117 53.0
Haze_09063 Corylus avellana HOM05D007590 ORTHO05D007875 8.1e-21 104.0 80 82.5
Sopen08g030630 Solanum pennellii HOM05D007590 ORTHO05D007875 1.8e-20 102.8 115 53.9
PGSC0003DMG400012280 Solanum tuberosum HOM05D007590 ORTHO05D007875 1.8e-20 102.8 115 52.2
Solyc08g082370.1 Solanum lycopersicum HOM05D007590 ORTHO05D007875 2.4e-20 102.4 115 53.9
Nn1g01873 Nelumbo nucifera HOM05D007590 ORTHO05D007875 3.1e-20 102.1 118 50.0
CiPaw.12G082700 Carya illinoinensis HOM05D007590 ORTHO05D007875 4.0e-20 101.7 119 53.8
Potri.001G091500 Populus trichocarpa HOM05D007590 ORTHO05D007875 2.0e-19 99.4 118 52.5
Peaxi162Scf00102g00178 Petunia axillaris HOM05D007590 ORTHO05D007875 9.9e-19 97.1 119 50.4
Actinidia22161 Actinidia chinensis HOM05D007590 ORTHO05D007875 1.3e-18 96.7 112 50.0
Lsat_1_v5_gn_6_83961 Lactuca sativa HOM05D007590 ORTHO05D007875 1.3e-18 96.7 114 50.0
LjContig00312_ERROPOS870357g0000452 Lotus japonicus HOM05D007590 ORTHO05D007875 2.9e-18 95.5 120 52.5
Potri.003G140100 Populus trichocarpa HOM05D007590 ORTHO05D007875 2.9e-18 95.5 118 50.8
HanXRQChr03g0083501 Helianthus annuus HOM05D007590 ORTHO05D007875 1.1e-17 93.6 113 46.9
Aqoxy5G04230 Aquilegia oxysepala HOM05D007590 ORTHO05D007875 1.4e-17 93.2 119 47.9
CANSAT21G0370 Cannabis sativa HOM05D007590 ORTHO05D007875 1.4e-17 93.2 128 51.6
Nn3g19015 Nelumbo nucifera HOM05D007590 ORTHO05D007875 2.4e-17 92.4 118 45.8
Nitab4.5_0002782g0040 Nicotiana tabacum HOM05D007590 ORTHO05D007875 3.2e-17 92.0 105 53.3
FAN13G0413 Fragaria x ananassa HOM05D007590 ORTHO05D007875 5.4e-17 91.3 124 51.6
Sabra03G0101100 Salix brachista HOM05D007590 ORTHO05D007875 7.1e-17 90.9 118 50.0
Peaxi162Scf00074g00097 Petunia axillaris HOM05D007590 ORTHO05D007875 9.3e-17 90.5 87 59.8
FAN08G0943 Fragaria x ananassa HOM05D007590 ORTHO05D007875 1.6e-16 89.7 122 48.4
FAN04G0970 Fragaria x ananassa HOM05D007590 ORTHO05D007875 2.7e-16 89.0 122 54.1
Lalb_Chr05g0211541 Lupinus albus HOM05D007590 ORTHO05D007875 2.7e-16 89.0 119 47.1
RcHm_v2.0_Chr7g0194781 Rosa chinensis HOM05D007590 ORTHO05D007875 2.7e-16 89.0 122 48.4
Cc08_g16080 Coffea canephora HOM05D007590 ORTHO05D007875 3.5e-16 88.6 119 48.7
MSTRG.25673 Avicennia marina HOM05D007590 ORTHO05D007875 4.6e-16 88.2 120 49.2
AUR62019841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 4.6e-16 88.2 122 43.4
Nitab4.5_0001231g0140 Nicotiana tabacum HOM05D007590 ORTHO05D007875 4.6e-16 88.2 105 50.5
Phvul.002G164500 Phaseolus vulgaris HOM05D007590 ORTHO05D007875 4.6e-16 88.2 115 45.2
Lsat_1_v5_gn_3_10720 Lactuca sativa HOM05D007590 ORTHO05D007875 1.0e-15 87.0 115 53.0
MSTRG.11924 Avicennia marina HOM05D007590 ORTHO05D007875 1.3e-15 86.7 115 46.1
DCAR_006487 Daucus carota HOM05D007590 ORTHO05D007875 1.8e-15 86.3 125 44.8
Sabra01G0067900 Salix brachista HOM05D007590 ORTHO05D007875 2.3e-15 85.9 114 46.5
Glyma.01G225600 Glycine max HOM05D007590 ORTHO05D007875 5.1e-15 84.7 121 44.6
AUR62010841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 1.5e-14 83.2 122 42.6
Ciclev10022592m.g Citrus clementina HOM05D007590 ORTHO05D007875 1.9e-14 82.8 112 44.6
CDE10G0927 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 2.5e-14 82.4 111 43.2
Medtr5g009260 Medicago truncatula HOM05D007590 ORTHO05D007875 4.3e-14 81.6 115 43.5
Manes.01G049200 Manihot esculenta HOM05D007590 ORTHO05D007875 7.4e-14 80.9 64 64.1
Thecc.03G298200 Theobroma cacao HOM05D007590 ORTHO05D007875 1.3e-13 80.1 120 45.0
EL10Ac5g12916 Beta vulgaris HOM05D007590 ORTHO05D007875 3.7e-13 78.6 82 50.0
CDE10G0175 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 3.7e-13 78.6 111 44.1
Ca_24513_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 3.7e-13 78.6 65 55.4
Ca_29733_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 3.7e-13 78.6 65 55.4
COL.COLO4_10703 Corchorus olitorius HOM05D007590 ORTHO05D007875 3.7e-13 78.6 70 58.6
Cpa.g.sc79.34 Carica papaya HOM05D007590 ORTHO05D007875 8.1e-13 77.4 120 38.3
Oeu063521.1 Olea europaea HOM05D007590 ORTHO05D007875 8.1e-13 77.4 116 45.7
Sed0026863 Sechium edule HOM05D007590 ORTHO05D007875 1.8e-12 76.3 133 38.3
Duzib068G0902 Durio zibethinus HOM05D007590 ORTHO05D007875 2.4e-12 75.9 71 60.6
Duzib205G1174 Durio zibethinus HOM05D007590 ORTHO05D007875 5.3e-12 74.7 119 42.0
Sopen08g004200 Solanum pennellii HOM05D007590 ORTHO05D007875 5.3e-12 74.7 119 42.9
PGSC0003DMG400005790 Solanum tuberosum HOM05D007590 ORTHO05D007875 6.9e-12 74.3 119 43.7
TPR.G25602 Trifolium pratense HOM05D007590 ORTHO05D007875 6.9e-12 74.3 116 41.4
MBI06_g08455_MAGBIO Magnolia biondii HOM05D007590 ORTHO05D007875 1.5e-11 73.2 68 54.4
Sed0003477 Sechium edule HOM05D007590 ORTHO05D007875 1.5e-11 73.2 62 56.5
Duzib068G0682 Durio zibethinus HOM05D007590 ORTHO05D007875 2.0e-11 72.8 120 41.7
Migut.A00642 Erythranthe guttata HOM05D007590 ORTHO05D007875 2.0e-11 72.8 61 59.0
Ah.12g052560 Amaranthus hybridus HOM05D007590 ORTHO05D007875 7.6e-11 70.9 126 37.3
MELO3C016294.2 Cucumis melo HOM05D007590 ORTHO05D007875 9.9e-11 70.5 72 54.2
Glyma.11G017400 Glycine max HOM05D007590 ORTHO05D007875 1.3e-10 70.1 74 52.7
Gohir.A12G236500 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.7e-10 69.7 116 45.7
SalBow1G4032 Salvia bowleyana HOM05D007590 ORTHO05D007875 1.7e-10 69.7 61 55.7
SalBow1G6340 Salvia bowleyana HOM05D007590 ORTHO05D007875 1.7e-10 69.7 61 55.7
TWI60G0225 Tripterygium wilfordii HOM05D007590 ORTHO05D007875 1.7e-10 69.7 121 40.5
ATR0602G105 Amborella trichopoda HOM05D007590 ORTHO05D007875 2.2e-10 69.3 132 35.6
CsaV3_4G006590 Cucumis sativus L. HOM05D007590 ORTHO05D007875 2.2e-10 69.3 120 45.0
Duzib084G0874 Durio zibethinus HOM05D007590 ORTHO05D007875 2.2e-10 69.3 66 59.1
Gorai.008G254500 Gossypium raimondii HOM05D007590 ORTHO05D007875 2.9e-10 68.9 116 41.4
Gohir.D12G237700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 3.8e-10 68.6 116 40.5
Gohir.D12G237966 Gossypium hirsutum HOM05D007590 ORTHO05D007875 3.8e-10 68.6 116 40.5
Eucgr.D01739 Eucalyptus grandis HOM05D007590 ORTHO05D007875 6.4e-10 67.8 138 44.2
ClCG07G011620 Citrullus lanatus HOM05D007590 ORTHO05D007875 1.9e-09 66.2 67 53.7
SGA_v2.0_scaffold305G47972 Striga asiatica HOM05D007590 ORTHO05D007875 7.1e-09 64.3 114 38.6
THA.LOC104817601 Tarenaya hassleriana HOM05D010600 ORTHO05D007875 9.3e-09 63.9 125 37.6
Carub.0002s0036 Capsella rubella HOM05D010600 ORTHO05D007875 2.7e-08 62.4 128 35.9
BcaB07g31500 Brassica carinata HOM05D010600 ORTHO05D007875 1.0e-07 60.5 126 38.9
A09p14360 Brassica napus HOM05D010600 ORTHO05D007875 1.3e-07 60.1 127 37.8
BraA09t37083Z Brassica rapa HOM05D010600 ORTHO05D007875 1.3e-07 60.1 127 37.8
BolC9t54630H Brassica oleracea HOM05D010600 ORTHO05D007875 2.3e-07 59.3 126 36.5
BcaC04g22619 Brassica carinata HOM05D010600 ORTHO05D007875 5.1e-07 58.2 126 37.3
C09p17280 Brassica napus HOM05D010600 ORTHO05D007875 5.1e-07 58.2 126 37.3
Gohir.A02G100100 Gossypium hirsutum HOM05D007590 ORTHO05D007875 5.1e-07 58.2 61 54.1
Gohir.A02G100200 Gossypium hirsutum HOM05D007590 ORTHO05D007875 5.1e-07 58.2 110 43.6
Gohir.D03G083700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 6.7e-07 57.8 119 38.7
BcaB07g31463 Brassica carinata HOM05D010600 ORTHO05D007875 8.7e-07 57.4 126 36.5
Thhalv10023875m.g Eutrema salsugineum HOM05D010600 ORTHO05D007875 8.7e-07 57.4 129 36.4
Sp2g00320 Schrenkiella parvula HOM05D010600 ORTHO05D007875 1.1e-06 57.0 128 35.9
Gorai.003G079000 Gossypium raimondii HOM05D007590 ORTHO05D007875 1.5e-06 56.6 111 38.7
Zm00001eb204270 Zea mays HOM05D021977 ORTHO05D007875 2.5e-06 55.8 58 51.7
PGR031G2453 Punica granatum HOM05D007590 ORTHO05D007875 4.3e-06 55.1 127 38.6
Aa31LG2G1420 Aethionema arabicum HOM05D010600 ORTHO05D007875 7.4e-06 54.3 130 33.1


User provided reference genes

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