Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012009 Carpinus fangiana HOM05D007727 ORTHO05D009078 2.5e-116 422.2 217 100.0
Haze_09064 Corylus avellana HOM05D007727 ORTHO05D009078 1.3e-51 207.2 126 89.7
Cfa012003 Carpinus fangiana HOM05D007727 ORTHO05D009078 3.0e-45 186.0 130 78.5
Cfa012008 Carpinus fangiana HOM05D007727 ORTHO05D009078 3.0e-45 186.0 130 78.5
Haze_09065 Corylus avellana HOM05D007727 ORTHO05D009078 3.3e-44 182.6 129 79.1
QL02p030393 Quercus lobata HOM05D007727 ORTHO05D009078 2.0e-25 120.2 131 61.1
QL02p030408 Quercus lobata HOM05D007727 ORTHO05D009078 5.9e-25 118.6 130 60.8
CiPaw.12G082600 Carya illinoinensis HOM05D007727 ORTHO05D009078 1.3e-24 117.5 140 55.7
Potri.004G151000 Populus trichocarpa HOM05D007727 ORTHO05D009078 3.8e-24 115.9 110 58.2
Potri.003G140200 Populus trichocarpa HOM05D007727 ORTHO05D009078 5.0e-24 115.5 110 58.2
Potri.003G140233 Populus trichocarpa HOM05D007727 ORTHO05D009078 5.0e-24 115.5 110 58.2
Potri.003G140266 Populus trichocarpa HOM05D007727 ORTHO05D009078 5.0e-24 115.5 110 58.2
CiPaw.12G082800 Carya illinoinensis HOM05D007727 ORTHO05D009078 8.5e-24 114.8 140 55.0
QL02p030384 Quercus lobata HOM05D007727 ORTHO05D009078 2.5e-23 113.2 130 58.5
QL02p030389 Quercus lobata HOM05D007727 ORTHO05D009078 3.2e-23 112.8 130 56.9
Potri.001G091400 Populus trichocarpa HOM05D007727 ORTHO05D009078 1.3e-19 100.9 130 49.2
CiPaw.11G121100 Carya illinoinensis HOM05D007727 ORTHO05D009078 1.6e-19 100.5 129 52.7
CSS0050195 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 4.1e-18 95.9 113 48.7
Hma1.2p1_1746F.1_g300420 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 1.5e-17 94.0 121 50.4
Manes.02G009800 Manihot esculenta HOM05D007727 ORTHO05D009078 2.0e-17 93.6 118 46.6
Sabra01G0067800 Salix brachista HOM05D007727 ORTHO05D009078 7.7e-17 91.7 111 53.2
Sabra01G0067700 Salix brachista HOM05D007727 ORTHO05D009078 3.8e-16 89.4 111 52.3
Thecc.03G298300 Theobroma cacao HOM05D007727 ORTHO05D009078 5.0e-16 89.0 115 53.0
Gohir.D08G130400 Gossypium hirsutum HOM05D007727 ORTHO05D009078 8.5e-16 88.2 122 50.0
COL.COLO4_10705 Corchorus olitorius HOM05D007727 ORTHO05D009078 1.4e-15 87.4 133 45.1
Hma1.2p1_1461F.1_g285070 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 1.9e-15 87.0 124 47.6
Duzib205G0888 Durio zibethinus HOM05D007727 ORTHO05D009078 3.2e-15 86.3 117 48.7
Gorai.004G133300 Gossypium raimondii HOM05D007727 ORTHO05D009078 3.2e-15 86.3 122 49.2
Prupe.5G120300 Prunus persica HOM05D007727 ORTHO05D009078 4.2e-15 85.9 121 52.1
Gohir.D03G083800 Gossypium hirsutum HOM05D007727 ORTHO05D009078 5.5e-15 85.5 84 57.1
Gorai.003G078900 Gossypium raimondii HOM05D007727 ORTHO05D009078 5.5e-15 85.5 84 57.1
FAN13G2104 Fragaria x ananassa HOM05D007727 ORTHO05D009078 9.4e-15 84.7 125 48.0
FAN13G3265 Fragaria x ananassa HOM05D007727 ORTHO05D009078 9.4e-15 84.7 125 48.0
Dinv38830 Davidia involucrata HOM05D007727 ORTHO05D009078 1.2e-14 84.3 99 52.5
Glyma.08G023200 Glycine max HOM05D007727 ORTHO05D009078 2.1e-14 83.6 118 43.2
Gohir.A02G100000 Gossypium hirsutum HOM05D007727 ORTHO05D009078 2.1e-14 83.6 82 57.3
Glyma.05G216900 Glycine max HOM05D007727 ORTHO05D009078 2.7e-14 83.2 112 47.3
CSS0019090 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 3.6e-14 82.8 159 40.3
Gohir.A08G103450 Gossypium hirsutum HOM05D007727 ORTHO05D009078 3.6e-14 82.8 112 49.1
Eucgr.D01747 Eucalyptus grandis HOM05D007727 ORTHO05D009078 4.6e-14 82.4 127 43.3
Hma1.2p1_1461F.1_g285060 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 6.1e-14 82.0 66 60.6
Hma1.2p1_2808F.1_g328866 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 6.1e-14 82.0 66 60.6
FvH4_5g04620 Fragaria vesca HOM05D007727 ORTHO05D009078 7.9e-14 81.6 122 47.5
FAN18G4426 Fragaria x ananassa HOM05D007727 ORTHO05D009078 7.9e-14 81.6 122 47.5
Eucgr.D01742 Eucalyptus grandis HOM05D007727 ORTHO05D009078 2.3e-13 80.1 62 64.5
FAN18G0179 Fragaria x ananassa HOM05D007727 ORTHO05D009078 3.0e-13 79.7 122 46.7
Glyma.05G217200 Glycine max HOM05D007727 ORTHO05D009078 6.7e-13 78.6 118 43.2
FAN08G2749 Fragaria x ananassa HOM05D007727 ORTHO05D009078 8.8e-13 78.2 122 46.7
Eucgr.D01744 Eucalyptus grandis HOM05D007727 ORTHO05D009078 3.3e-12 76.3 115 45.2
Glyma.08G022800 Glycine max HOM05D007727 ORTHO05D009078 3.3e-12 76.3 116 47.4
CANSAT21G1217 Cannabis sativa HOM05D007727 ORTHO05D009078 4.4e-12 75.9 75 54.7
Phvul.002G164400 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 4.4e-12 75.9 104 44.2
Rhsim02G0243800 Rhododendron simsii HOM05D007727 ORTHO05D009078 5.7e-12 75.5 67 55.2
VMungo1215G2373 Vigna mungo HOM05D007727 ORTHO05D009078 5.7e-12 75.5 125 40.8
Glyma.11G017500 Glycine max HOM05D007727 ORTHO05D009078 9.7e-12 74.7 111 45.0
Rhsim02G0243700 Rhododendron simsii HOM05D007727 ORTHO05D009078 9.7e-12 74.7 114 44.7
Ciclev10022327m.g Citrus clementina HOM05D007727 ORTHO05D009078 2.2e-11 73.6 175 37.7
Phvul.002G298600 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 2.2e-11 73.6 117 41.0
Glyma.01G225500 Glycine max HOM05D007727 ORTHO05D009078 2.8e-11 73.2 109 46.8
Rhsim02G0243900 Rhododendron simsii HOM05D007727 ORTHO05D009078 6.3e-11 72.0 116 40.5
LjContig00312_ERROPOS870357g0016151 Lotus japonicus HOM05D007727 ORTHO05D009078 8.2e-11 71.6 102 49.0
Phvul.002G298200 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 1.1e-10 71.2 115 40.9
FAN04G2059 Fragaria x ananassa HOM05D007727 ORTHO05D009078 2.4e-10 70.1 103 46.6
Lj4g0015473 Lotus japonicus HOM05D007727 ORTHO05D009078 3.1e-10 69.7 120 42.5
Oeu031673.1 Olea europaea HOM05D007727 ORTHO05D009078 4.1e-10 69.3 104 47.1
VMungo0251G2989 Vigna mungo HOM05D007727 ORTHO05D009078 4.1e-10 69.3 114 41.2
Oeu031672.1 Olea europaea HOM05D007727 ORTHO05D009078 5.3e-10 68.9 119 43.7
Rhsim02G0243600 Rhododendron simsii HOM05D007727 ORTHO05D009078 5.3e-10 68.9 119 38.7
TPR.G3394 Trifolium pratense HOM05D007727 ORTHO05D009078 6.9e-10 68.6 106 42.5
Rhsim02G0244000 Rhododendron simsii HOM05D007727 ORTHO05D009078 9.1e-10 68.2 116 40.5
TPR.G11121 Trifolium pratense HOM05D007727 ORTHO05D009078 3.4e-09 66.2 124 36.3
MSTRG.25675 Avicennia marina HOM05D007727 ORTHO05D009078 1.0e-08 64.7 109 41.3
Lalb_Chr05g0224131 Lupinus albus HOM05D007727 ORTHO05D009078 1.3e-08 64.3 123 40.7
ECA240G1351 Erigeron canadensis HOM05D007727 ORTHO05D009078 2.2e-08 63.5 89 44.9
AUR62019842 Chenopodium quinoa HOM05D007727 ORTHO05D009078 5.0e-08 62.4 86 44.2
Medtr5g009290 Medicago truncatula HOM05D007727 ORTHO05D009078 6.5e-08 62.0 109 41.3
TPR.G3415 Trifolium pratense HOM05D007727 ORTHO05D009078 6.5e-08 62.0 102 42.2
Sopen08g030640 Solanum pennellii HOM05D011491 ORTHO05D009078 8.5e-08 61.6 47 57.4
PGSC0003DMG400012146 Solanum tuberosum HOM05D011491 ORTHO05D009078 3.2e-07 59.7 148 33.1
PGSC0003DMG400012147 Solanum tuberosum HOM05D011491 ORTHO05D009078 4.2e-07 59.3 130 34.6
Nitab4.5_0001210g0030 Nicotiana tabacum HOM05D011491 ORTHO05D009078 7.2e-07 58.5 127 35.4
TPR.G3425 Trifolium pratense HOM05D007727 ORTHO05D009078 9.4e-07 58.2 89 41.6
AUR62010842 Chenopodium quinoa HOM05D007727 ORTHO05D009078 1.2e-06 57.8 82 43.9
Lj4g0008549 Lotus japonicus HOM05D007727 ORTHO05D009078 1.2e-06 57.8 106 43.4
ClCG07G011610 Citrullus lanatus HOM05D007727 ORTHO05D009078 3.6e-06 56.2 110 38.2
TPR.G25603 Trifolium pratense HOM05D007727 ORTHO05D009078 6.1e-06 55.5 114 40.4


User provided reference genes

Program Settings