Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012003 Carpinus fangiana HOM05D007727 ORTHO05D009078 3.2e-72 275.0 142 100.0
Cfa012008 Carpinus fangiana HOM05D007727 ORTHO05D009078 3.2e-72 275.0 142 100.0
Haze_09065 Corylus avellana HOM05D007727 ORTHO05D009078 3.7e-60 235.0 142 88.7
Haze_09064 Corylus avellana HOM05D007727 ORTHO05D009078 5.9e-50 201.1 143 77.6
Cfa012009 Carpinus fangiana HOM05D007727 ORTHO05D009078 3.3e-45 185.3 130 78.5
CiPaw.12G082600 Carya illinoinensis HOM05D007727 ORTHO05D009078 2.2e-28 129.4 151 55.0
QL02p030389 Quercus lobata HOM05D007727 ORTHO05D009078 7.0e-27 124.4 148 55.4
QL02p030384 Quercus lobata HOM05D007727 ORTHO05D009078 1.2e-26 123.6 148 56.1
QL02p030408 Quercus lobata HOM05D007727 ORTHO05D009078 5.9e-26 121.3 141 55.3
QL02p030393 Quercus lobata HOM05D007727 ORTHO05D009078 5.0e-25 118.2 130 57.7
CiPaw.12G082800 Carya illinoinensis HOM05D007727 ORTHO05D009078 1.5e-24 116.7 136 54.4
Potri.004G151000 Populus trichocarpa HOM05D007727 ORTHO05D009078 4.2e-24 115.2 111 61.3
Potri.003G140200 Populus trichocarpa HOM05D007727 ORTHO05D009078 1.0e-22 110.5 111 60.4
Potri.003G140233 Populus trichocarpa HOM05D007727 ORTHO05D009078 1.0e-22 110.5 111 60.4
Potri.003G140266 Populus trichocarpa HOM05D007727 ORTHO05D009078 1.0e-22 110.5 111 60.4
CiPaw.11G121100 Carya illinoinensis HOM05D007727 ORTHO05D009078 1.7e-20 103.2 150 48.0
Duzib205G0888 Durio zibethinus HOM05D007727 ORTHO05D009078 4.8e-20 101.7 141 48.2
Potri.001G091400 Populus trichocarpa HOM05D007727 ORTHO05D009078 3.1e-19 99.0 114 51.8
Hma1.2p1_1746F.1_g300420 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 1.6e-18 96.7 134 50.7
Sabra01G0067800 Salix brachista HOM05D007727 ORTHO05D009078 4.5e-18 95.1 140 43.6
Manes.02G009800 Manihot esculenta HOM05D007727 ORTHO05D009078 5.9e-18 94.7 121 55.4
Thecc.03G298300 Theobroma cacao HOM05D007727 ORTHO05D009078 7.7e-18 94.4 143 46.2
Sabra01G0067700 Salix brachista HOM05D007727 ORTHO05D009078 5.0e-17 91.7 140 42.9
Hma1.2p1_1461F.1_g285070 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 1.5e-16 90.1 138 45.7
Gorai.004G133300 Gossypium raimondii HOM05D007727 ORTHO05D009078 1.9e-16 89.7 121 49.6
FAN13G2104 Fragaria x ananassa HOM05D007727 ORTHO05D009078 2.5e-16 89.4 145 43.4
FAN13G3265 Fragaria x ananassa HOM05D007727 ORTHO05D009078 2.5e-16 89.4 145 43.4
FvH4_5g04620 Fragaria vesca HOM05D007727 ORTHO05D009078 9.5e-16 87.4 145 43.4
FAN18G4426 Fragaria x ananassa HOM05D007727 ORTHO05D009078 9.5e-16 87.4 145 43.4
FAN18G0179 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.2e-15 87.0 145 43.4
Gohir.D08G130400 Gossypium hirsutum HOM05D007727 ORTHO05D009078 1.2e-15 87.0 139 44.6
CSS0050195 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 2.1e-15 86.3 113 46.0
Dinv38830 Davidia involucrata HOM05D007727 ORTHO05D009078 4.7e-15 85.1 122 50.0
FAN08G2749 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.8e-14 83.2 145 42.8
Gohir.A08G103450 Gossypium hirsutum HOM05D007727 ORTHO05D009078 2.3e-14 82.8 127 44.1
Prupe.5G120300 Prunus persica HOM05D007727 ORTHO05D009078 2.3e-14 82.8 151 41.7
Hma1.2p1_1461F.1_g285060 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 3.0e-14 82.4 61 65.6
Hma1.2p1_2808F.1_g328866 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 3.0e-14 82.4 61 65.6
COL.COLO4_10705 Corchorus olitorius HOM05D007727 ORTHO05D009078 5.2e-14 81.6 133 44.4
Rhsim02G0243900 Rhododendron simsii HOM05D007727 ORTHO05D009078 6.8e-14 81.3 115 47.8
Gohir.D03G083800 Gossypium hirsutum HOM05D007727 ORTHO05D009078 1.5e-13 80.1 85 56.5
Gorai.003G078900 Gossypium raimondii HOM05D007727 ORTHO05D009078 1.5e-13 80.1 85 56.5
Rhsim02G0243700 Rhododendron simsii HOM05D007727 ORTHO05D009078 1.5e-13 80.1 113 46.0
CSS0019090 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 2.0e-13 79.7 133 43.6
Glyma.05G216900 Glycine max HOM05D007727 ORTHO05D009078 2.0e-13 79.7 120 45.8
FAN04G2059 Fragaria x ananassa HOM05D007727 ORTHO05D009078 5.7e-13 78.2 128 43.0
Glyma.08G023200 Glycine max HOM05D007727 ORTHO05D009078 5.7e-13 78.2 118 46.6
Gohir.A02G100000 Gossypium hirsutum HOM05D007727 ORTHO05D009078 1.7e-12 76.6 83 55.4
Rhsim02G0243800 Rhododendron simsii HOM05D007727 ORTHO05D009078 1.7e-12 76.6 112 47.3
Rhsim02G0244000 Rhododendron simsii HOM05D007727 ORTHO05D009078 4.9e-12 75.1 140 40.7
Glyma.11G017500 Glycine max HOM05D007727 ORTHO05D009078 8.3e-12 74.3 107 50.5
Glyma.08G022800 Glycine max HOM05D007727 ORTHO05D009078 1.4e-11 73.6 125 45.6
Rhsim02G0243600 Rhododendron simsii HOM05D007727 ORTHO05D009078 1.4e-11 73.6 59 62.7
Eucgr.D01742 Eucalyptus grandis HOM05D007727 ORTHO05D009078 1.8e-11 73.2 63 61.9
Eucgr.D01747 Eucalyptus grandis HOM05D007727 ORTHO05D009078 2.4e-11 72.8 139 40.3
VMungo1215G2373 Vigna mungo HOM05D007727 ORTHO05D009078 3.1e-11 72.4 100 45.0
Glyma.01G225500 Glycine max HOM05D007727 ORTHO05D009078 4.1e-11 72.0 104 51.0
Eucgr.D01744 Eucalyptus grandis HOM05D007727 ORTHO05D009078 7.0e-11 71.2 121 43.8
Oeu031673.1 Olea europaea HOM05D007727 ORTHO05D009078 1.2e-10 70.5 119 47.1
Glyma.05G217200 Glycine max HOM05D007727 ORTHO05D009078 1.6e-10 70.1 109 44.0
Lj4g0015473 Lotus japonicus HOM05D007727 ORTHO05D009078 1.6e-10 70.1 128 41.4
Ciclev10022327m.g Citrus clementina HOM05D007727 ORTHO05D009078 2.0e-10 69.7 132 43.9
LjContig00312_ERROPOS870357g0016151 Lotus japonicus HOM05D007727 ORTHO05D009078 5.9e-10 68.2 101 47.5
Phvul.002G164400 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 7.8e-10 67.8 117 43.6
Oeu031672.1 Olea europaea HOM05D007727 ORTHO05D009078 1.0e-09 67.4 118 47.5
CANSAT21G1217 Cannabis sativa HOM05D007727 ORTHO05D009078 1.3e-09 67.0 49 67.3
Phvul.002G298200 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 3.8e-09 65.5 103 41.7
Phvul.002G298600 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 3.8e-09 65.5 103 41.7
TPR.G11121 Trifolium pratense HOM05D007727 ORTHO05D009078 3.8e-09 65.5 101 43.6
TPR.G3394 Trifolium pratense HOM05D007727 ORTHO05D009078 8.6e-09 64.3 101 43.6
MSTRG.25675 Avicennia marina HOM05D007727 ORTHO05D009078 1.9e-08 63.2 107 42.1
Lj4g0008549 Lotus japonicus HOM05D007727 ORTHO05D009078 2.5e-08 62.8 108 46.3
Nitab4.5_0001210g0030 Nicotiana tabacum HOM05D011491 ORTHO05D009078 2.1e-07 59.7 103 38.8
ECA240G1351 Erigeron canadensis HOM05D007727 ORTHO05D009078 3.6e-07 58.9 87 43.7
Sopen08g030640 Solanum pennellii HOM05D011491 ORTHO05D009078 4.7e-07 58.5 50 52.0
Lalb_Chr05g0224131 Lupinus albus HOM05D007727 ORTHO05D009078 6.1e-07 58.2 123 36.6
PGSC0003DMG400012147 Solanum tuberosum HOM05D011491 ORTHO05D009078 8.0e-07 57.8 131 37.4
Sabra03G0101200 Salix brachista HOM05D007727 ORTHO05D009078 1.0e-06 57.4 114 40.4
TAR374G1599 Trochodendron aralioides HOM05D026466 ORTHO05D009078 1.0e-06 57.4 162 38.9
TPR.G3415 Trifolium pratense HOM05D007727 ORTHO05D009078 1.4e-06 57.0 87 41.4
VMungo0251G2989 Vigna mungo HOM05D007727 ORTHO05D009078 1.4e-06 57.0 113 38.1
TPR.G3425 Trifolium pratense HOM05D007727 ORTHO05D009078 2.3e-06 56.2 87 40.2
AUR62019842 Chenopodium quinoa HOM05D007727 ORTHO05D009078 3.0e-06 55.8 82 43.9
ClCG07G011610 Citrullus lanatus HOM05D007727 ORTHO05D009078 3.0e-06 55.8 94 43.6
CAN.G1804.6 Capsicum annuum HOM05D011491 ORTHO05D009078 5.2e-06 55.1 115 36.5
PGSC0003DMG400012145 Solanum tuberosum HOM05D011491 ORTHO05D009078 5.2e-06 55.1 110 37.3
PGSC0003DMG400012146 Solanum tuberosum HOM05D011491 ORTHO05D009078 6.8e-06 54.7 132 36.4
TAR374G1217 Trochodendron aralioides HOM05D026466 ORTHO05D009078 6.8e-06 54.7 160 36.9


User provided reference genes

Program Settings