Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 3.2e-102 375.2 199 100.0
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 1.3e-84 316.6 297 65.0
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 7.2e-70 267.7 201 76.6
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 3.6e-69 265.4 199 74.9
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 1.9e-62 243.0 205 69.3
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 2.5e-62 242.7 205 69.3
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 1.2e-61 240.4 199 69.3
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 4.6e-61 238.4 204 66.2
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 2.3e-60 236.1 206 67.0
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 3.9e-60 235.3 205 67.8
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 8.8e-60 234.2 205 67.8
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 2.6e-59 232.6 199 65.8
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 2.6e-59 232.6 199 69.3
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 4.4e-59 231.9 206 63.1
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 4.4e-59 231.9 199 65.8
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 7.4e-59 231.1 209 62.7
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 9.7e-59 230.7 209 65.6
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 1.3e-58 230.3 205 67.3
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 1.7e-58 229.9 203 65.5
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.4e-57 226.9 207 61.8
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 6.9e-57 224.6 201 66.7
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 1.3e-55 220.3 205 62.0
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 3.8e-55 218.8 204 63.7
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 3.8e-55 218.8 176 70.5
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 5.0e-55 218.4 201 67.2
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 6.5e-55 218.0 199 64.8
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 8.5e-55 217.6 205 62.9
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.4e-54 216.9 226 58.0
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 3.2e-54 215.7 209 63.6
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 5.5e-54 214.9 246 53.3
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 9.4e-54 214.2 202 65.3
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.2e-53 213.8 204 62.3
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 2.7e-53 212.6 226 57.1
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 7.9e-53 211.1 204 61.3
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.4e-52 210.3 204 60.8
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 3.9e-52 208.8 206 62.1
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 1.1e-51 207.2 211 56.4
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 1.1e-51 207.2 211 56.4
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 1.5e-51 206.8 211 58.3
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.5e-51 206.8 202 61.9
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 2.0e-51 206.5 205 61.0
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 3.3e-51 205.7 179 67.0
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 3.3e-51 205.7 208 59.6
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 5.7e-51 204.9 243 55.1
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 9.7e-51 204.1 181 69.1
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 1.3e-50 203.8 205 60.5
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 3.7e-50 202.2 205 61.0
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 3.7e-50 202.2 205 61.0
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 4.8e-50 201.8 206 59.7
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 8.2e-50 201.1 202 60.9
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 5.3e-49 198.4 201 61.2
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 7.0e-49 198.0 200 59.5
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 1.6e-48 196.8 209 60.3
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 4.5e-48 195.3 186 65.1
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 4.5e-48 195.3 186 65.1
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 7.7e-48 194.5 200 61.0
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 2.2e-47 193.0 229 56.3
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 5.0e-47 191.8 198 58.6
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 1.1e-46 190.7 202 58.9
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 4.7e-45 185.3 201 59.2
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 6.1e-45 184.9 203 56.2
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 6.1e-45 184.9 191 62.8
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.6e-43 179.5 263 47.5
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 2.6e-43 179.5 263 47.5
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 4.4e-43 178.7 205 52.7
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 4.4e-43 178.7 190 58.9
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 5.7e-43 178.3 189 57.7
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 7.5e-43 177.9 198 52.5
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.3e-42 177.2 202 55.4
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 2.2e-42 176.4 206 56.3
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 2.2e-42 176.4 201 52.7
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 5.3e-41 171.8 199 54.3
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.6e-40 170.2 180 60.0
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 6.5e-39 164.9 158 62.0
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 3.2e-38 162.5 203 51.7
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 5.5e-38 161.8 209 56.5
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 1.2e-37 160.6 225 50.2
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 3.6e-37 159.1 200 54.5
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 8.0e-37 157.9 205 52.7
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 1.4e-36 157.1 193 54.4
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 4.0e-36 155.6 118 72.9
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 5.2e-36 155.2 166 56.0
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 5.7e-35 151.8 124 71.0
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 9.8e-35 151.0 120 72.5
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 9.8e-35 151.0 120 72.5
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 1.7e-34 150.2 120 70.0
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 2.8e-34 149.4 255 43.1
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 2.8e-34 149.4 120 70.0
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 3.1e-33 146.0 120 68.3
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 5.9e-32 141.7 120 65.0
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 7.7e-32 141.4 189 48.1
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 1.7e-31 140.2 120 69.2
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 1.7e-31 140.2 196 49.5
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 3.8e-31 139.0 293 38.9
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 8.5e-31 137.9 146 56.8
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 1.5e-30 137.1 202 44.6
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 1.9e-30 136.7 137 57.7
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 2.5e-30 136.3 189 46.6
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 3.2e-30 136.0 211 44.5
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 7.2e-30 134.8 211 43.6
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 8.0e-29 131.3 180 50.0
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 5.2e-28 128.6 223 44.4
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 5.2e-28 128.6 175 47.4
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 6.8e-28 128.3 110 64.5
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 8.8e-28 127.9 180 48.3
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.5e-27 127.1 195 46.7
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 3.4e-27 125.9 152 51.3
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 5.7e-27 125.2 180 47.8
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 9.8e-27 124.4 215 43.3
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 1.7e-26 123.6 308 35.1
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 2.8e-26 122.9 207 43.5
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 7.0e-25 118.2 196 44.4
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 9.2e-25 117.9 200 46.0
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 1.2e-24 117.5 99 67.7
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 2.0e-24 116.7 262 36.3
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 2.9e-23 112.8 200 40.5
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 3.8e-23 112.5 196 44.4
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 8.6e-23 111.3 185 43.8
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 1.1e-22 110.9 198 43.4
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 2.5e-22 109.8 191 42.9
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 9.5e-22 107.8 111 55.0
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 4.7e-21 105.5 226 37.6
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 8.0e-21 104.8 124 50.0
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 1.3e-18 97.4 182 45.1
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 2.2e-18 96.7 120 50.8
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 3.7e-18 95.9 71 70.4
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 3.7e-18 95.9 135 48.9
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 7.8e-16 88.2 255 35.7
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.3e-15 87.4 109 47.7
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.3e-15 87.4 109 47.7
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.3e-15 87.4 109 47.7
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 3.0e-15 86.3 123 49.6
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 5.0e-15 85.5 121 48.8
Oeu029936.1 Olea europaea HOM05D005115 ORTHO05D005703 1.1e-14 84.3 59 72.9
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 1.9e-14 83.6 121 47.9
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 1.9e-14 83.6 73 64.4
QL02p030259 Quercus lobata HOM05D005115 ORTHO05D005703 7.3e-14 81.6 80 60.0
CSS0029994 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.6e-13 80.5 83 57.8
CSS0045410 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 1.6e-13 80.5 83 57.8
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 6.2e-13 78.6 119 45.4
Lj4g0005021 Lotus japonicus HOM05D005115 ORTHO05D005703 6.2e-13 78.6 178 36.5
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 4.0e-12 75.9 122 47.5
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 8.9e-12 74.7 64 64.1
Lalb_Chr05g0211571 Lupinus albus HOM05D005115 ORTHO05D005703 2.0e-11 73.6 86 52.3
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 5.8e-11 72.0 71 56.3
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 1.7e-10 70.5 62 62.9
MD06G1108300 Malus domestica HOM05D005115 ORTHO05D005703 2.4e-09 66.6 61 62.3
Actinidia04197 Actinidia chinensis HOM05D000749 ORTHO05D004893 6.0e-08 62.0 80 47.5


User provided reference genes

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