Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 2.4e-113 412.1 205 100.0
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 1.3e-111 406.4 205 99.0
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 6.9e-84 314.3 216 75.5
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 2.1e-80 302.8 218 74.8
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.3e-77 293.5 209 71.8
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 4.8e-77 291.6 209 71.8
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 2.4e-76 289.3 209 73.2
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 5.8e-75 284.6 209 69.9
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 9.9e-75 283.9 209 70.8
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 6.4e-74 281.2 216 69.9
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 1.4e-73 280.0 213 67.6
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 1.9e-73 279.6 206 69.4
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.9e-73 279.6 209 69.4
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 1.9e-73 279.6 209 69.4
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 1.9e-73 279.6 206 71.4
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 2.4e-73 279.3 209 69.4
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 2.4e-73 279.3 216 68.5
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 2.4e-73 279.3 215 70.7
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 3.2e-73 278.9 213 71.8
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 4.2e-73 278.5 208 69.2
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 4.2e-73 278.5 214 70.6
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 4.2e-73 278.5 207 72.5
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 4.2e-73 278.5 214 69.6
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 5.5e-73 278.1 209 68.9
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 5.5e-73 278.1 215 70.2
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 9.3e-73 277.3 215 68.4
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 1.6e-72 276.6 216 68.5
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 2.7e-72 275.8 208 69.2
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.7e-72 275.8 219 70.8
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 2.7e-72 275.8 209 67.9
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 3.5e-72 275.4 211 70.6
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 3.5e-72 275.4 212 68.9
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 4.6e-72 275.0 202 69.8
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 4.6e-72 275.0 206 70.4
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 7.9e-72 274.2 218 67.0
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 7.9e-72 274.2 204 71.1
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 3.0e-71 272.3 208 67.8
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 3.0e-71 272.3 201 70.1
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 5.1e-71 271.6 209 67.0
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 6.7e-71 271.2 211 70.1
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 1.1e-70 270.4 208 70.7
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.1e-70 270.4 208 70.7
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.1e-70 270.4 208 70.7
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.1e-70 270.4 201 71.6
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.5e-70 270.0 208 70.7
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.5e-70 269.2 208 70.7
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 4.3e-70 268.5 206 71.8
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 5.6e-70 268.1 211 67.8
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 5.6e-70 268.1 222 67.1
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 7.4e-70 267.7 208 70.2
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 7.4e-70 267.7 216 68.5
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 9.6e-70 267.3 178 76.4
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 1.6e-69 266.5 210 67.1
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 2.1e-69 266.2 215 67.9
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 6.2e-69 264.6 217 68.2
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 4.0e-68 261.9 163 80.4
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 5.3e-68 261.5 209 66.0
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 5.3e-68 261.5 208 69.7
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 9.0e-68 260.8 211 64.9
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 9.0e-68 260.8 216 68.5
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.5e-67 260.0 214 65.4
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 1.5e-67 260.0 207 69.1
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 3.4e-67 258.8 270 55.9
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 3.4e-67 258.8 207 68.6
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 3.4e-67 258.8 207 68.6
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 4.5e-67 258.5 171 80.1
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 4.5e-67 258.5 173 75.1
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 7.6e-67 257.7 191 74.3
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.3e-66 256.9 180 71.7
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 1.3e-66 256.9 216 67.6
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 1.7e-66 256.5 203 68.5
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 2.2e-66 256.1 203 69.5
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 2.2e-66 256.1 178 71.9
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.2e-66 256.1 207 70.0
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.9e-66 255.8 207 70.5
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 4.9e-66 255.0 197 67.0
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 6.5e-66 254.6 210 66.7
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.4e-65 253.4 208 68.8
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 1.4e-65 253.4 205 67.3
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.9e-65 253.1 208 68.8
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 2.5e-65 252.7 210 65.7
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.7e-64 249.2 208 68.3
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 3.5e-64 248.8 205 64.9
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 4.6e-64 248.4 205 66.8
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 6.0e-64 248.1 207 69.1
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 7.9e-64 247.7 207 65.7
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 5.1e-63 245.0 216 63.4
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 8.7e-63 244.2 215 62.8
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 1.1e-62 243.8 205 66.8
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 1.5e-62 243.4 216 65.3
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 2.5e-62 242.7 216 62.5
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 3.3e-62 242.3 210 63.3
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 3.3e-62 242.3 206 66.5
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 5.7e-62 241.5 210 65.2
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 9.6e-62 240.7 201 65.2
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.3e-61 240.4 206 65.5
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 1.8e-60 236.5 204 62.3
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 6.9e-60 234.6 212 61.8
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 9.0e-60 234.2 212 60.8
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.6e-59 232.6 228 60.5
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 2.6e-59 232.6 208 62.0
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 5.0e-58 228.4 207 60.9
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 8.5e-58 227.6 172 68.0
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.1e-57 227.3 212 61.8
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 1.4e-57 226.9 213 59.6
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 2.5e-57 226.1 214 58.4
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 3.2e-57 225.7 199 63.8
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 3.6e-56 222.2 213 61.0
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 1.1e-54 217.2 311 46.6
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.9e-54 216.5 151 71.5
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 9.7e-54 214.2 206 61.2
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 9.7e-54 214.2 218 57.3
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 2.2e-53 213.0 121 84.3
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 5.3e-52 208.4 206 58.7
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 6.9e-52 208.0 210 56.7
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 3.2e-49 199.1 146 69.2
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.2e-48 197.2 209 55.0
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.2e-48 197.2 209 55.0
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 1.2e-48 197.2 212 57.1
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 1.0e-47 194.1 201 54.2
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 1.0e-47 194.1 156 64.1
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 2.3e-47 193.0 154 64.3
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 3.7e-45 185.7 102 89.2
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 4.8e-45 185.3 215 53.0
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 1.4e-44 183.7 122 73.8
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 4.5e-43 178.7 120 72.5
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 2.2e-42 176.4 147 63.9
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 1.2e-40 170.6 217 51.6
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 2.0e-38 163.3 93 82.8
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 2.6e-35 152.9 112 62.5
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 3.5e-35 152.5 149 53.0
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 4.5e-35 152.1 112 62.5
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 6.5e-34 148.3 111 61.3
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 8.5e-34 147.9 81 88.9
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 4.2e-33 145.6 135 54.8
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 5.5e-33 145.2 106 60.4
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 3.1e-28 129.4 94 63.8
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.7e-26 123.6 80 75.0
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.0e-26 122.1 67 86.6
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.0e-26 122.1 67 86.6
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.0e-23 114.4 135 54.8
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 3.0e-23 112.8 137 52.6
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 3.2e-17 92.8 70 67.1
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 9.8e-14 81.3 170 36.5
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 1.7e-13 80.5 50 74.0
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 1.2e-08 64.3 63 57.1
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 1.5e-06 57.4 38 71.1


User provided reference genes

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