Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011973 Carpinus fangiana HOM05D003558 ORTHO05D004392 1.5e-101 372.9 185 100.0
CSS0024989 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 6.2e-92 340.9 184 92.4
CiPaw.12G080800 Carya illinoinensis HOM05D003558 ORTHO05D004392 6.2e-92 340.9 184 91.8
Lalb_Chr07g0188951 Lupinus albus HOM05D003558 ORTHO05D004392 8.1e-92 340.5 184 91.3
QL05p030756 Quercus lobata HOM05D003558 ORTHO05D004392 8.1e-92 340.5 184 91.8
Dinv37501 Davidia involucrata HOM05D003558 ORTHO05D004392 1.1e-91 340.1 184 91.3
Dinv38812 Davidia involucrata HOM05D003558 ORTHO05D004392 1.4e-91 339.7 184 91.3
arahy.Tifrunner.gnm1.ann1.HE7D3F Arachis hypogaea HOM05D003558 ORTHO05D004392 8.9e-91 337.0 184 90.8
arahy.Tifrunner.gnm1.ann1.R1RJVJ Arachis hypogaea HOM05D003558 ORTHO05D004392 8.9e-91 337.0 184 90.8
MSTRG.13893 Avicennia marina HOM05D003558 ORTHO05D004392 8.9e-91 337.0 184 90.2
Phvul.002G197600 Phaseolus vulgaris HOM05D003558 ORTHO05D004392 8.9e-91 337.0 184 90.2
CSS0001609 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.5e-90 336.3 184 89.7
CSS0022214 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 2.0e-90 335.9 184 90.2
Ca_13177_v3 Cicer arietinum L. HOM05D003558 ORTHO05D004392 2.0e-90 335.9 185 90.3
Glyma.05G127300 Glycine max HOM05D003558 ORTHO05D004392 2.0e-90 335.9 184 90.2
Glyma.08G082000 Glycine max HOM05D003558 ORTHO05D004392 2.0e-90 335.9 184 90.2
VMungo0251G1601 Vigna mungo HOM05D003558 ORTHO05D004392 3.4e-90 335.1 184 89.7
MELO3C016262.2 Cucumis melo HOM05D003558 ORTHO05D004392 4.4e-90 334.7 184 89.1
vmacro21480 Vaccinium macrocarpon HOM05D003558 ORTHO05D004392 4.4e-90 334.7 184 90.8
CiPaw.11G117400 Carya illinoinensis HOM05D003558 ORTHO05D004392 5.8e-90 334.3 184 89.7
QL02p029625 Quercus lobata HOM05D003558 ORTHO05D004392 5.8e-90 334.3 184 90.8
TAR375G0349 Trochodendron aralioides HOM05D003558 ORTHO05D004392 5.8e-90 334.3 184 88.0
Thecc.05G207600 Theobroma cacao HOM05D003558 ORTHO05D004392 7.6e-90 334.0 184 89.7
Prupe.5G124300 Prunus persica HOM05D003558 ORTHO05D004392 9.9e-90 333.6 184 90.8
TAR425G0004 Trochodendron aralioides HOM05D003558 ORTHO05D004392 9.9e-90 333.6 184 88.6
Ca_18846_v3 Cicer arietinum L. HOM05D003558 ORTHO05D004392 1.3e-89 333.2 184 90.2
ClCG07G011380 Citrullus lanatus HOM05D003558 ORTHO05D004392 1.3e-89 333.2 184 88.6
SGA_v2.0_scaffold111G31394 Striga asiatica HOM05D003558 ORTHO05D004392 1.3e-89 333.2 184 90.8
Lj4g0003124 Lotus japonicus HOM05D003558 ORTHO05D004392 2.2e-89 332.4 184 89.1
CsaV3_4G006830 Cucumis sativus L. HOM05D003558 ORTHO05D004392 2.9e-89 332.0 184 88.6
Lj8A204G66 Lonicera japonica HOM05D003558 ORTHO05D004392 2.9e-89 332.0 184 89.1
TAR374G0657 Trochodendron aralioides HOM05D003558 ORTHO05D004392 2.9e-89 332.0 184 87.5
CSS0014298 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 3.8e-89 331.6 184 88.6
CANSAT21G2039 Cannabis sativa HOM05D003558 ORTHO05D004392 4.9e-89 331.3 184 89.1
SalBow8G5190 Salvia bowleyana HOM05D003558 ORTHO05D004392 6.4e-89 330.9 184 89.1
MSTRG.1797 Avicennia marina HOM05D003558 ORTHO05D004392 8.4e-89 330.5 184 88.6
Duzib128G1157 Durio zibethinus HOM05D003558 ORTHO05D004392 1.1e-88 330.1 184 88.0
Psat6g019440 Pisum sativum HOM05D003558 ORTHO05D004392 1.1e-88 330.1 184 89.1
MD06G1111600 Malus domestica HOM05D003558 ORTHO05D004392 1.4e-88 329.7 184 89.1
Duzib106G0520 Durio zibethinus HOM05D003558 ORTHO05D004392 1.9e-88 329.3 184 88.0
TWI81G0268 Tripterygium wilfordii HOM05D003558 ORTHO05D004392 1.9e-88 329.3 184 89.7
HanXRQChr14g0460421 Helianthus annuus HOM05D003558 ORTHO05D004392 2.4e-88 328.9 184 88.0
Medtr1g016750 Medicago truncatula HOM05D003558 ORTHO05D004392 2.4e-88 328.9 184 88.6
Sc01g0010420 Simmondsia chinensis HOM05D003558 ORTHO05D004392 2.4e-88 328.9 184 88.6
GSVIVG01019594001 Vitis vinifera HOM05D003558 ORTHO05D004392 3.2e-88 328.6 184 89.1
Gohir.A08G223500 Gossypium hirsutum HOM05D003558 ORTHO05D004392 5.4e-88 327.8 184 88.0
Sed0010282 Sechium edule HOM05D003558 ORTHO05D004392 5.4e-88 327.8 184 86.4
Psat0s889g0080 Pisum sativum HOM05D003558 ORTHO05D004392 7.1e-88 327.4 184 88.0
Peaxi162Scf00074g00546 Petunia axillaris HOM05D003558 ORTHO05D004392 9.2e-88 327.0 182 87.9
Eucgr.E00889 Eucalyptus grandis HOM05D003558 ORTHO05D004392 1.2e-87 326.6 184 87.5
Lalb_Chr12g0208821 Lupinus albus HOM05D003558 ORTHO05D004392 1.2e-87 326.6 184 86.4
Psat7g261400 Pisum sativum HOM05D003558 ORTHO05D004392 1.2e-87 326.6 184 88.0
TPR.G13178 Trifolium pratense HOM05D003558 ORTHO05D004392 1.6e-87 326.2 184 88.0
Cpa.g.sc79.5 Carica papaya HOM05D003558 ORTHO05D004392 2.7e-87 325.5 180 88.9
Gohir.1Z049372 Gossypium hirsutum HOM05D003558 ORTHO05D004392 2.7e-87 325.5 184 87.0
Gorai.004G260100 Gossypium raimondii HOM05D003558 ORTHO05D004392 2.7e-87 325.5 184 87.0
CSS0013121 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 3.5e-87 325.1 184 87.5
COL.COLO4_08911 Corchorus olitorius HOM05D003558 ORTHO05D004392 7.8e-87 323.9 184 88.0
Lsat_1_v5_gn_3_12881 Lactuca sativa HOM05D003558 ORTHO05D004392 7.8e-87 323.9 184 87.0
Sopen08g030930 Solanum pennellii HOM05D003558 ORTHO05D004392 7.8e-87 323.9 184 87.5
HanXRQChr15g0472881 Helianthus annuus HOM05D003558 ORTHO05D004392 1.0e-86 323.6 184 87.0
Nitab4.5_0002793g0010 Nicotiana tabacum HOM05D003558 ORTHO05D004392 1.0e-86 323.6 184 87.0
PGSC0003DMG400012259 Solanum tuberosum HOM05D003558 ORTHO05D004392 1.0e-86 323.6 184 87.5
Manes.02G006900 Manihot esculenta HOM05D003558 ORTHO05D004392 1.3e-86 323.2 184 88.0
Sed0022053 Sechium edule HOM05D003558 ORTHO05D004392 1.3e-86 323.2 184 85.9
Nitab4.5_0000357g0410 Nicotiana tabacum HOM05D003558 ORTHO05D004392 1.7e-86 322.8 184 85.3
DCAR_006513 Daucus carota HOM05D003558 ORTHO05D004392 2.3e-86 322.4 183 85.8
MD14G1132800 Malus domestica HOM05D003558 ORTHO05D004392 3.0e-86 322.0 184 87.0
Nn1g00283 Nelumbo nucifera HOM05D003558 ORTHO05D004392 3.0e-86 322.0 184 87.0
Actinidia22742 Actinidia chinensis HOM05D003558 ORTHO05D004392 3.9e-86 321.6 184 86.4
Ciclev10021697m.g Citrus clementina HOM05D003558 ORTHO05D004392 3.9e-86 321.6 184 87.0
Nn2g12717 Nelumbo nucifera HOM05D003558 ORTHO05D004392 3.9e-86 321.6 184 86.4
Cc08_g16370 Coffea canephora HOM05D003558 ORTHO05D004392 6.6e-86 320.9 184 87.0
Nitab4.5_0002367g0050 Nicotiana tabacum HOM05D003558 ORTHO05D004392 8.6e-86 320.5 184 86.4
vmacro13883 Vaccinium macrocarpon HOM05D003558 ORTHO05D004392 8.6e-86 320.5 204 81.9
COL.COLO4_35445 Corchorus olitorius HOM05D003558 ORTHO05D004392 1.1e-85 320.1 183 87.4
Nitab4.5_0003266g0030 Nicotiana tabacum HOM05D003558 ORTHO05D004392 1.1e-85 320.1 182 85.2
Aqoxy2G02732 Aquilegia oxysepala HOM05D003558 ORTHO05D004392 1.5e-85 319.7 184 85.3
ECA246G0145 Erigeron canadensis HOM05D003558 ORTHO05D004392 1.5e-85 319.7 184 84.8
Hma1.2p1_0440F.1_g153570 Hydrangea macrophylla HOM05D003558 ORTHO05D004392 1.5e-85 319.7 228 73.7
DCAR_026273 Daucus carota HOM05D003558 ORTHO05D004392 1.9e-85 319.3 184 87.0
Solyc08g082700.3 Solanum lycopersicum HOM05D003558 ORTHO05D004392 1.9e-85 319.3 184 86.4
Oeu041397.1 Olea europaea HOM05D003558 ORTHO05D004392 4.3e-85 318.2 184 86.4
PGR042G0055 Punica granatum HOM05D003558 ORTHO05D004392 4.3e-85 318.2 184 83.2
Atru.chr9.1940 Acer truncatum HOM05D003558 ORTHO05D004392 5.6e-85 317.8 184 85.3
Aa31LG2G1510 Aethionema arabicum HOM05D003558 ORTHO05D004392 7.3e-85 317.4 184 85.9
Migut.A00609 Erythranthe guttata HOM05D003558 ORTHO05D004392 7.3e-85 317.4 184 87.5
Lj3g0002122 Lotus japonicus HOM05D003558 ORTHO05D004392 1.6e-84 316.2 184 85.3
Manes.01G045195 Manihot esculenta HOM05D003558 ORTHO05D004392 1.6e-84 316.2 184 87.5
TWI60G0493 Tripterygium wilfordii HOM05D003558 ORTHO05D004392 1.6e-84 316.2 184 85.3
CARHR046430 Cardamine hirsuta HOM05D003558 ORTHO05D004392 2.1e-84 315.8 184 85.3
Sp7g00080 Schrenkiella parvula HOM05D003558 ORTHO05D004392 2.1e-84 315.8 184 85.3
Duzib177G1044 Durio zibethinus HOM05D003558 ORTHO05D004392 3.6e-84 315.1 185 85.9
PSO170G3792 Papaver somniferum HOM05D003558 ORTHO05D004392 6.2e-84 314.3 184 83.7
EL10Ac5g12950 Beta vulgaris HOM05D003558 ORTHO05D004392 8.1e-84 313.9 184 84.2
Thhalv10023640m.g Eutrema salsugineum HOM05D003558 ORTHO05D004392 1.1e-83 313.5 184 84.8
Sp2g00230 Schrenkiella parvula HOM05D003558 ORTHO05D004392 1.4e-83 313.2 184 85.3
BcaB07g31471 Brassica carinata HOM05D003558 ORTHO05D004392 1.8e-83 312.8 184 85.3
Carub.0002s0023 Capsella rubella HOM05D003558 ORTHO05D004392 2.4e-83 312.4 184 84.8
Hund11374 Selenicereus undatus HOM05D003558 ORTHO05D004392 2.4e-83 312.4 184 84.8
BcaB07g31496 Brassica carinata HOM05D003558 ORTHO05D004392 4.0e-83 311.6 184 85.3
AUR62007010 Chenopodium quinoa HOM05D003558 ORTHO05D004392 4.0e-83 311.6 184 84.8
AUR62019874 Chenopodium quinoa HOM05D003558 ORTHO05D004392 5.2e-83 311.2 184 84.2
THA.LOC104817564 Tarenaya hassleriana HOM05D003558 ORTHO05D004392 5.2e-83 311.2 184 84.2
A09p14640 Brassica napus HOM05D003558 ORTHO05D004392 6.9e-83 310.8 184 84.8
BraA09t37110Z Brassica rapa HOM05D003558 ORTHO05D004392 6.9e-83 310.8 184 84.8
ATR0602G090 Amborella trichopoda HOM05D003558 ORTHO05D004392 2.0e-82 309.3 184 82.1
AL7G47120 Arabidopsis lyrata HOM05D003558 ORTHO05D004392 2.6e-82 308.9 184 83.2
BcaC04g22613 Brassica carinata HOM05D003558 ORTHO05D004392 2.6e-82 308.9 184 84.2
A09p14400 Brassica napus HOM05D003558 ORTHO05D004392 2.6e-82 308.9 184 84.2
BcaC04g22576 Brassica carinata HOM05D003558 ORTHO05D004392 5.8e-82 307.8 184 83.7
BraA09t37087Z Brassica rapa HOM05D003558 ORTHO05D004392 5.8e-82 307.8 184 83.7
CAN.G567.30 Capsicum annuum HOM05D003558 ORTHO05D004392 5.8e-82 307.8 184 84.2
PSO017G6909 Papaver somniferum HOM05D003558 ORTHO05D004392 5.8e-82 307.8 184 82.6
Potri.003G142700 Populus trichocarpa HOM05D003558 ORTHO05D004392 5.8e-82 307.8 184 84.2
HPP92_006339 Vanilla planifolia HOM05D003558 ORTHO05D004392 5.8e-82 307.8 184 82.1
BolC9t54634H Brassica oleracea HOM05D003558 ORTHO05D004392 7.6e-82 307.4 184 83.7
C09p17320 Brassica napus HOM05D003558 ORTHO05D004392 9.9e-82 307.0 184 83.7
C09p17720 Brassica napus HOM05D003558 ORTHO05D004392 9.9e-82 307.0 184 83.7
BolC9t54666H Brassica oleracea HOM05D003558 ORTHO05D004392 9.9e-82 307.0 184 83.7
AL2G10280 Arabidopsis lyrata HOM05D003558 ORTHO05D004392 2.9e-81 305.4 184 83.2
AT1G64520 Arabidopsis thaliana HOM05D003558 ORTHO05D004392 2.9e-81 305.4 184 83.2
Os07g0435100 Oryza sativa ssp. japonica HOM05D003558 ORTHO05D004392 3.8e-81 305.1 184 83.2
Potri.001G088200 Populus trichocarpa HOM05D003558 ORTHO05D004392 4.9e-81 304.7 184 83.7
THA.LOC104809321 Tarenaya hassleriana HOM05D003558 ORTHO05D004392 8.4e-81 303.9 184 83.2
RcHm_v2.0_Chr7g0186141 Rosa chinensis HOM05D003558 ORTHO05D004392 2.4e-80 302.4 184 82.1
Oeu055020.1 Olea europaea HOM05D003558 ORTHO05D004392 3.2e-80 302.0 184 83.2
FvH4_5g11650 Fragaria vesca HOM05D003558 ORTHO05D004392 5.4e-80 301.2 184 81.5
FAN04G1402 Fragaria x ananassa HOM05D003558 ORTHO05D004392 5.4e-80 301.2 184 81.5
FAN18G4084 Fragaria x ananassa HOM05D003558 ORTHO05D004392 5.4e-80 301.2 184 81.5
FAN18G4304 Fragaria x ananassa HOM05D003558 ORTHO05D004392 5.4e-80 301.2 184 81.5
FAN13G2808 Fragaria x ananassa HOM05D003558 ORTHO05D004392 1.2e-79 300.1 184 81.0
FAN08G1805 Fragaria x ananassa HOM05D003558 ORTHO05D004392 2.7e-79 298.9 184 81.0
COL.COLO4_23475 Corchorus olitorius HOM05D003558 ORTHO05D004392 1.7e-78 296.2 209 75.1
Sabra01G0064500 Salix brachista HOM05D003558 ORTHO05D004392 2.3e-78 295.8 184 81.5
Sabra03G0103300 Salix brachista HOM05D003558 ORTHO05D004392 5.1e-78 294.7 184 81.5
Zm00001eb413880 Zea mays HOM05D003558 ORTHO05D004392 1.5e-77 293.1 184 79.3
Zm00001eb121180 Zea mays HOM05D003558 ORTHO05D004392 7.3e-77 290.8 184 78.3
SEGI_23551 Sequoiadendron giganteum HOM05D003558 ORTHO05D004392 1.8e-75 286.2 184 77.2
Ah.12g052830 Amaranthus hybridus HOM05D003558 ORTHO05D004392 4.0e-75 285.0 184 77.2
Mapoly0071s0017 Marchantia polymorpha HOM05D003558 ORTHO05D004392 1.4e-72 276.6 184 72.8
CSS0017714 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.3e-70 270.0 222 66.2
Pp3c17_21360 Physcomitrium patens HOM05D003558 ORTHO05D004392 1.3e-70 270.0 184 72.8
Pp3c14_17630 Physcomitrium patens HOM05D003558 ORTHO05D004392 1.5e-69 266.5 184 72.3
Oeu009980.1 Olea europaea HOM05D003558 ORTHO05D004392 4.8e-68 261.5 150 88.0
AagrBONN_evm.TU.Sc2ySwM_228.783 Anthoceros agrestis HOM05D003558 ORTHO05D004392 7.6e-66 254.2 184 69.0
CBR_g36847 Chara braunii HOM05D003558 ORTHO05D004392 3.2e-64 248.8 184 69.0
Haze_09103 Corylus avellana HOM05D003558 ORTHO05D004392 2.3e-62 242.7 128 94.5
RcHm_v2.0_Chr2g0138681 Rosa chinensis HOM05D003558 ORTHO05D004392 1.1e-56 223.8 194 63.9
FvH4_6g31620 Fragaria vesca HOM05D003558 ORTHO05D004392 5.1e-54 214.9 195 61.5
SMO196G0279 Selaginella moellendorffii HOM05D003558 ORTHO05D004392 2.1e-52 209.5 181 60.2
Nitab4.5_0007285g0050 Nicotiana tabacum HOM05D003558 ORTHO05D004392 1.1e-51 207.2 148 73.0
FAN09G0436 Fragaria x ananassa HOM05D003558 ORTHO05D004392 4.1e-51 205.3 195 60.0
Peaxi162Scf00117g00921 Petunia axillaris HOM05D003558 ORTHO05D004392 3.2e-48 195.7 112 85.7
AT5G42040 Arabidopsis thaliana HOM05D003558 ORTHO05D004392 1.6e-47 193.4 184 60.3
CSS0031875 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 3.9e-46 188.7 184 58.2
PRCOL_00000075 Prasinoderma coloniale HOM05D003558 ORTHO05D004392 3.4e-42 175.6 182 48.4
Eucgr.E00943 Eucalyptus grandis HOM05D003558 ORTHO05D004392 4.5e-42 175.3 108 79.6
Eucgr.E00914 Eucalyptus grandis HOM05D003558 ORTHO05D004392 3.8e-41 172.2 100 84.0
Cre17.g708300 Chlamydomonas reinhardtii HOM05D003558 ORTHO05D004392 5.5e-40 168.3 180 50.6
MCO10G293 Micromonas commoda HOM05D003558 ORTHO05D004392 7.2e-40 167.9 180 47.2
HPP92_027865 Vanilla planifolia HOM05D003558 ORTHO05D004392 1.8e-38 163.3 93 87.1
Eucgr.E00681 Eucalyptus grandis HOM05D003558 ORTHO05D004392 2.0e-34 149.8 109 73.4
Eucgr.E00961 Eucalyptus grandis HOM05D003558 ORTHO05D004392 1.3e-33 147.1 85 87.1
Eucgr.E00934 Eucalyptus grandis HOM05D003558 ORTHO05D004392 8.2e-28 127.9 94 70.2
CSS0029558 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 6.5e-25 118.2 67 85.1
CSS0047737 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.2e-23 114.0 59 91.5
Psat6g100040 Pisum sativum HOM05D003558 ORTHO05D004392 2.7e-23 112.8 71 74.6
CSS0010814 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.5e-21 107.1 78 73.1
Sc07g0010140 Simmondsia chinensis HOM05D003558 ORTHO05D004392 3.3e-21 105.9 171 40.4
Actinidia22185 Actinidia chinensis HOM05D003558 ORTHO05D005715 1.8e-19 100.1 87 62.1
Aqoxy2G02712 Aquilegia oxysepala HOM05D003558 ORTHO05D004392 2.4e-19 99.8 61 75.4
CSS0046828 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 9.4e-16 87.8 52 80.8
CSS0000450 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 6.1e-15 85.1 49 81.6
CSS0004905 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 2.2e-12 76.6 44 79.5
Aqoxy2G02711 Aquilegia oxysepala HOM05D003558 ORTHO05D004392 2.8e-07 59.7 32 84.4
Glyma.03G059800 Glycine max HOM05D000140 ORTHO05D004392 4.7e-07 58.9 32 84.4
AUR62042885 Chenopodium quinoa HOM05D003558 ORTHO05D138145 5.2e-06 55.5 43 60.5
AUR62036024 Chenopodium quinoa HOM05D000031 ORTHO05D010178 8.8e-06 54.7 35 71.4


User provided reference genes

Program Settings