Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011969 Carpinus fangiana HOM05D005777 ORTHO05D006854 0.0e+00 1326.6 663 100.0
Haze_09107 Corylus avellana HOM05D005777 ORTHO05D006854 0.0e+00 1186.4 675 90.2
QL02p029612 Quercus lobata HOM05D005777 ORTHO05D006854 3.5e-246 855.1 679 68.0
Prupe.5G124500 Prunus persica HOM05D005777 ORTHO05D006854 1.6e-174 617.1 683 52.4
RcHm_v2.0_Chr7g0186161 Rosa chinensis HOM05D005777 ORTHO05D006854 2.5e-159 566.6 733 49.1
FvH4_5g11630 Fragaria vesca HOM05D005777 ORTHO05D006854 3.8e-152 542.7 731 47.3
Sabra07G0049700 Salix brachista HOM05D005777 ORTHO05D006854 2.3e-141 506.9 777 43.5
FAN13G2465 Fragaria x ananassa HOM05D005777 ORTHO05D006854 4.0e-133 479.6 692 45.7
Nitab4.5_0002793g0030 Nicotiana tabacum HOM05D005777 ORTHO05D006854 1.3e-131 474.6 531 49.5
Nitab4.5_0002367g0090 Nicotiana tabacum HOM05D005777 ORTHO05D006854 8.3e-131 471.9 545 49.0
Atru.chr9.1942 Acer truncatum HOM05D005777 ORTHO05D006854 9.2e-130 468.4 701 43.7
vmacro13879 Vaccinium macrocarpon HOM05D005777 ORTHO05D006854 1.6e-129 467.6 621 45.1
FAN04G0792 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.0e-128 464.9 690 45.1
CiPaw.11G117200 Carya illinoinensis HOM05D005777 ORTHO05D006854 2.3e-128 463.8 678 44.2
Lj8C204T6 Lonicera japonica HOM05D005777 ORTHO05D006854 1.6e-126 457.6 604 42.9
Potri.007G058050 Populus trichocarpa HOM05D005777 ORTHO05D006854 9.9e-124 448.4 683 43.0
TWI60G0567 Tripterygium wilfordii HOM05D005777 ORTHO05D006854 2.4e-117 427.2 544 46.5
MD06G1111700 Malus domestica HOM05D005777 ORTHO05D006854 4.0e-117 426.4 684 41.1
Thecc.08G166000 Theobroma cacao HOM05D005777 ORTHO05D006854 5.4e-106 389.4 583 43.7
Cpa.g.sc79.3 Carica papaya HOM05D005777 ORTHO05D006854 6.0e-105 386.0 675 40.3
MELO3C033830.2 Cucumis melo HOM05D005777 ORTHO05D006854 2.1e-102 377.5 620 40.8
Sed0007946 Sechium edule HOM05D005777 ORTHO05D006854 4.8e-102 376.3 682 39.4
Glyma.05G218900 Glycine max HOM05D005777 ORTHO05D006854 1.8e-101 374.4 639 40.1
Glyma.08G025000 Glycine max HOM05D005777 ORTHO05D006854 9.0e-101 372.1 527 43.8
CsaV3_5G001940 Cucumis sativus L. HOM05D005777 ORTHO05D006854 1.5e-100 371.3 677 38.8
CSS0003604 Camellia sinensis var. sinensis HOM05D005777 ORTHO05D006854 2.9e-99 367.1 475 45.3
Lj4g0026879 Lotus japonicus HOM05D005777 ORTHO05D006854 3.8e-99 366.7 681 38.8
Rhsim07G0080700 Rhododendron simsii HOM05D005777 ORTHO05D006854 1.9e-98 364.4 506 43.5
CANSAT21G0853 Cannabis sativa HOM05D005777 ORTHO05D006854 2.4e-98 364.0 637 39.2
Psat7g024000 Pisum sativum HOM05D005777 ORTHO05D006854 1.1e-93 348.6 384 50.8
TAR629G1222 Trochodendron aralioides HOM05D005777 ORTHO05D006854 3.1e-93 347.1 567 39.7
Actinidia22740 Actinidia chinensis HOM05D005777 ORTHO05D006854 3.4e-92 343.6 746 33.1
Aqoxy5G04312 Aquilegia oxysepala HOM05D005777 ORTHO05D006854 3.8e-91 340.1 537 41.7
FAN18G2480 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.4e-90 338.2 526 41.3
Lalb_Chr05g0223951 Lupinus albus HOM05D005777 ORTHO05D006854 7.9e-89 332.4 412 47.1
Eucgr.E00747 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.0e-88 332.0 403 47.4
Medtr8g099725 Medicago truncatula HOM05D005777 ORTHO05D006854 7.4e-87 325.9 383 49.3
Phvul.002G300700 Phaseolus vulgaris HOM05D005777 ORTHO05D006854 3.7e-86 323.6 385 49.1
Eucgr.E00956 Eucalyptus grandis HOM05D005777 ORTHO05D006854 5.8e-84 316.2 382 47.4
Peaxi162Scf00074g00526 Petunia axillaris HOM05D005777 ORTHO05D006854 1.0e-83 315.5 711 33.8
Eucgr.E00744 Eucalyptus grandis HOM05D005777 ORTHO05D006854 6.5e-83 312.8 403 45.7
PGSC0003DMG400012134 Solanum tuberosum HOM05D005777 ORTHO05D006854 6.5e-83 312.8 767 32.1
PGR042G2859 Punica granatum HOM05D005777 ORTHO05D006854 1.1e-82 312.0 358 50.8
DCAR_006511 Daucus carota HOM05D005777 ORTHO05D006854 5.5e-82 309.7 545 39.3
MBI07_g24771_MAGBIO Magnolia biondii HOM05D005777 ORTHO05D006854 7.1e-82 309.3 526 40.1
Solyc08g082720.4 Solanum lycopersicum HOM05D005777 ORTHO05D006854 7.1e-82 309.3 680 34.7
Sopen08g030950 Solanum pennellii HOM05D005777 ORTHO05D006854 1.6e-81 308.1 561 37.3
FAN08G0729 Fragaria x ananassa HOM05D005777 ORTHO05D006854 6.0e-81 306.2 483 41.4
CAN.G567.32 Capsicum annuum HOM05D005777 ORTHO05D006854 2.3e-80 304.3 533 38.1
TPR.G3378 Trifolium pratense HOM05D005777 ORTHO05D006854 2.5e-74 284.3 438 41.1
VMungo0251G0419 Vigna mungo HOM05D003100 ORTHO05D003533 5.5e-74 283.1 701 32.4
Nn1g00296 Nelumbo nucifera HOM05D005777 ORTHO05D006854 7.2e-74 282.7 404 41.8
Manes.01G049500 Manihot esculenta HOM05D005777 ORTHO05D006854 1.6e-73 281.6 309 54.0
Lsat_1_v5_gn_6_83361 Lactuca sativa HOM05D005777 ORTHO05D006854 6.7e-72 276.2 357 45.4
Dinv37498 Davidia involucrata HOM05D005777 ORTHO05D006854 1.7e-67 261.5 593 35.2
ECA240G0322 Erigeron canadensis HOM05D005777 ORTHO05D006854 7.2e-66 256.1 698 31.8
HanXRQChr03g0083721 Helianthus annuus HOM05D005777 ORTHO05D006854 7.9e-65 252.7 351 43.3
Oeu055021.1 Olea europaea HOM05D005777 ORTHO05D006854 3.0e-64 250.8 277 49.5
FAN18G2579 Fragaria x ananassa HOM05D005777 ORTHO05D006854 5.3e-61 240.0 301 47.5
PSO170G4328 Papaver somniferum HOM05D005777 ORTHO05D006854 2.0e-60 238.0 716 30.0
Cc08_g16390 Coffea canephora HOM05D005777 ORTHO05D006854 2.2e-59 234.6 305 46.2
Sc01g0010430 Simmondsia chinensis HOM05D005777 ORTHO05D006854 2.5e-58 231.1 267 48.7
Ca_17460_v3 Cicer arietinum L. HOM05D005777 ORTHO05D006854 5.5e-58 229.9 408 39.5
Eucgr.E00752 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.8e-56 224.9 350 40.6
Duzib116G0305 Durio zibethinus HOM05D005777 ORTHO05D006854 1.1e-55 222.2 247 50.2
Ah.12g052840 Amaranthus hybridus HOM05D005777 ORTHO05D006854 7.4e-55 219.5 432 35.0
Migut.E00735 Erythranthe guttata HOM05D005777 ORTHO05D006854 7.4e-55 219.5 265 46.4
Hund14203 Selenicereus undatus HOM05D005777 ORTHO05D006854 9.7e-55 219.2 263 46.8
EL10Ac5g12951 Beta vulgaris HOM05D005777 ORTHO05D006854 1.7e-54 218.4 268 46.3
Migut.E01651 Erythranthe guttata HOM05D005777 ORTHO05D006854 3.7e-54 217.2 254 47.2
Eucgr.E00762 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.3e-48 198.0 265 44.2
Eucgr.E00939 Eucalyptus grandis HOM05D005777 ORTHO05D006854 8.8e-48 196.1 195 53.8
AUR62019875 Chenopodium quinoa HOM05D005777 ORTHO05D006854 1.4e-45 188.7 226 46.5
GSVIVG01019597001 Vitis vinifera HOM05D005777 ORTHO05D006854 2.4e-45 188.0 139 67.6
Ciclev10023944m.g Citrus clementina HOM05D005777 ORTHO05D006854 5.3e-45 186.8 194 50.0
COL.COLO4_25066 Corchorus olitorius HOM05D000316 ORTHO05D006854 1.2e-44 185.7 495 31.3
Gohir.A02G088000 Gossypium hirsutum HOM05D005777 ORTHO05D006854 7.7e-44 183.0 262 44.3
Gorai.005G117300 Gossypium raimondii HOM05D005777 ORTHO05D006854 1.5e-42 178.7 262 43.5
Ciclev10023874m.g Citrus clementina HOM05D005777 ORTHO05D006854 1.8e-37 161.8 153 59.5
Lsat_1_v5_gn_5_82800 Lactuca sativa HOM05D005777 ORTHO05D006854 2.0e-36 158.3 295 35.6
Eucgr.E00900 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.4e-31 140.6 166 50.0
Gohir.D02G103200 Gossypium hirsutum HOM05D005777 ORTHO05D006854 4.4e-31 140.6 407 30.2
HPP92_024143 Vanilla planifolia HOM05D005777 ORTHO05D006854 4.4e-31 140.6 273 34.8
Lsat_1_v5_gn_9_112141 Lactuca sativa HOM05D005777 ORTHO05D006854 2.8e-30 137.9 124 57.3
Eucgr.E00969 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.7e-30 137.5 166 48.8
Eucgr.E00749 Eucalyptus grandis HOM05D005777 ORTHO05D006854 6.3e-30 136.7 151 51.0
Eucgr.E01013 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.6e-28 132.1 166 47.6
SGA_v2.0_scaffold74G24601 Striga asiatica HOM05D005777 ORTHO05D006854 3.5e-28 131.0 248 35.1
ATR0602G092 Amborella trichopoda HOM05D005777 ORTHO05D006854 5.9e-28 130.2 419 28.2
AUR62007011 Chenopodium quinoa HOM05D005777 ORTHO05D006854 1.3e-27 129.0 265 36.2
Thhalv10028849m.g Eutrema salsugineum HOM05D005777 ORTHO05D006854 1.7e-27 128.6 160 46.2
Sp6g06640 Schrenkiella parvula HOM05D005777 ORTHO05D006854 3.8e-27 127.5 160 47.5
Eucgr.E00726 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.9e-26 125.2 133 53.4
CARHR255730 Cardamine hirsuta HOM05D005777 ORTHO05D006854 2.1e-25 121.7 160 45.0
THA.LOC104813047 Tarenaya hassleriana HOM05D005777 ORTHO05D006854 8.0e-25 119.8 161 50.3
Carub.0006s2962 Capsella rubella HOM05D005777 ORTHO05D006854 1.4e-24 119.0 158 43.7
AL6G44960 Arabidopsis lyrata HOM05D005777 ORTHO05D006854 2.3e-24 118.2 163 43.6
AT4G10890 Arabidopsis thaliana HOM05D005777 ORTHO05D006854 1.5e-23 115.5 157 43.9
Eucgr.E00696 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.0e-23 115.2 133 48.1
Eucgr.E00894 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.0e-23 115.2 102 57.8
Eucgr.E00895 Eucalyptus grandis HOM05D005777 ORTHO05D006854 7.5e-23 113.2 109 49.5
Eucgr.E00912 Eucalyptus grandis HOM05D005777 ORTHO05D006854 8.3e-22 109.8 105 54.3
BcaB01g01556 Brassica carinata HOM05D005777 ORTHO05D006854 2.7e-20 104.8 162 43.2
FAN04G0565 Fragaria x ananassa HOM05D005777 ORTHO05D006854 3.5e-20 104.4 100 57.0
QL08p034398 Quercus lobata HOM05D000176 ORTHO05D000106 7.8e-20 103.2 98 61.2
Os09g0363400 Oryza sativa ssp. japonica HOM05D005777 ORTHO05D006854 3.0e-19 101.3 233 30.9
QL06p042986 Quercus lobata HOM05D000529 ORTHO05D000472 3.9e-19 100.9 88 64.8
Eucgr.E00686 Eucalyptus grandis HOM05D005777 ORTHO05D006854 8.6e-19 99.8 101 48.5
C09p35860 Brassica napus HOM05D005777 ORTHO05D006854 3.6e-17 94.4 161 39.8
SHI06955 Sapria himalayana HOM05D005777 ORTHO05D006854 1.1e-16 92.8 69 66.7
BolC9t56419H Brassica oleracea HOM05D005777 ORTHO05D006854 4.0e-16 90.9 161 39.1
BraA09t38398Z Brassica rapa HOM05D005777 ORTHO05D006854 8.9e-16 89.7 302 29.8
BcaC04g21086 Brassica carinata HOM05D005777 ORTHO05D006854 1.5e-15 89.0 161 39.1
Aa31LG9G11240 Aethionema arabicum HOM05D005777 ORTHO05D006854 9.8e-15 86.3 111 45.9
CDE03G0022 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 1.1e-13 82.8 229 28.8
Actinidia27306 Actinidia chinensis HOM05D005777 ORTHO05D006854 1.4e-13 82.4 70 61.4
Hma1.2p1_0338F.1_g129700 Hydrangea macrophylla HOM05D005777 ORTHO05D006854 2.4e-13 81.6 65 60.0
SHI06954 Sapria himalayana HOM05D000023 ORTHO05D000014 4.1e-13 80.9 102 46.1
A09p28290 Brassica napus HOM05D005777 ORTHO05D006854 7.0e-13 80.1 292 28.8
AagrBONN_evm.TU.Sc2ySwM_368.2767 Anthoceros agrestis HOM05D005777 ORTHO05D006854 1.2e-12 79.3 174 31.6
Lsat_1_v5_gn_3_40061 Lactuca sativa HOM05D005777 ORTHO05D006854 1.5e-10 72.4 88 47.7
Eucgr.H03743 Eucalyptus grandis HOM05D005777 ORTHO05D006854 7.3e-10 70.1 77 49.4
Eucgr.E00971 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.7e-09 67.4 69 53.6
Eucgr.E00710 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.0e-08 64.3 70 50.0
HanXRQChr03g0083731 Helianthus annuus HOM05D005777 ORTHO05D006854 3.4e-07 61.2 114 35.1
PSO063G6181 Papaver somniferum HOM05D005777 ORTHO05D006854 3.4e-07 61.2 43 58.1


User provided reference genes

Program Settings