Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 4.7e-291 1003.8 515 100.0
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 1.2e-278 962.6 518 95.4
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 3.3e-252 874.8 514 85.0
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 4.9e-248 860.9 516 85.1
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 1.0e-229 800.0 515 77.3
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 3.4e-225 785.0 513 76.6
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 6.5e-224 780.8 513 75.8
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 1.1e-223 780.0 513 76.2
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 1.1e-223 780.0 520 77.3
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 4.2e-223 778.1 515 75.1
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 2.7e-222 775.4 513 76.8
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 4.7e-222 774.6 514 75.5
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 1.0e-221 773.5 510 76.3
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 1.4e-221 773.1 513 75.2
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 3.0e-221 771.9 513 75.0
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 3.9e-221 771.5 513 74.9
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 3.9e-221 771.5 515 75.5
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 5.2e-221 771.2 513 77.0
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 2.6e-220 768.8 515 77.7
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 3.3e-220 768.5 526 73.2
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 1.7e-219 766.1 519 74.6
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 1.7e-219 766.1 515 73.4
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 1.7e-219 766.1 526 73.8
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 4.8e-219 764.6 515 73.8
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 6.3e-219 764.2 514 75.1
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 1.8e-218 762.7 515 75.1
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 2.4e-218 762.3 514 76.1
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 2.4e-218 762.3 519 76.1
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 3.1e-218 761.9 517 76.2
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 5.3e-218 761.1 514 75.9
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 2.0e-217 759.2 520 74.4
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 4.5e-217 758.1 515 75.7
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 7.7e-217 757.3 514 75.1
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 2.9e-216 755.4 514 74.9
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 2.9e-216 755.4 515 75.0
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 8.5e-216 753.8 521 74.5
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 1.5e-215 753.1 571 68.8
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 6.7e-213 744.2 512 73.4
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 6.7e-213 744.2 495 77.2
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 1.5e-212 743.0 533 71.5
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 2.0e-212 742.7 518 74.9
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 4.8e-211 738.0 515 73.8
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 1.8e-210 736.1 515 72.8
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 7.2e-207 724.2 596 66.3
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 6.1e-206 721.1 515 71.3
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 1.4e-205 719.9 515 70.7
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 1.2e-204 716.8 521 69.1
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 2.8e-203 712.2 513 70.6
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 1.6e-201 706.4 515 67.8
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 2.0e-201 706.1 515 68.7
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 5.9e-201 704.5 516 70.2
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 3.8e-200 701.8 515 67.8
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 4.2e-199 698.4 516 69.0
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 9.2e-194 680.6 515 68.0
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 9.2e-194 680.6 529 67.5
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 1.3e-192 676.8 512 67.0
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 8.6e-192 674.1 515 69.1
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 3.3e-191 672.2 519 66.7
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 4.7e-190 668.3 529 64.7
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 4.7e-190 668.3 528 63.6
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 3.4e-188 662.1 506 65.6
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 7.5e-188 661.0 530 66.0
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 9.8e-188 660.6 515 67.4
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 8.3e-187 657.5 513 67.4
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 4.1e-186 655.2 536 65.1
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 7.0e-186 654.4 516 65.5
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 7.8e-185 651.0 521 62.4
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 2.1e-182 642.9 471 71.8
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 1.4e-181 640.2 523 62.3
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 6.8e-181 637.9 464 71.3
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 7.5e-180 634.4 518 60.6
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 1.3e-179 633.6 549 60.7
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 2.2e-179 632.9 537 61.8
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 2.9e-179 632.5 560 64.1
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 3.7e-179 632.1 522 64.6
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 3.0e-176 622.5 567 60.0
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 8.6e-176 620.9 528 63.1
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 1.9e-175 619.8 521 63.5
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 1.6e-174 616.7 521 63.3
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 1.6e-174 616.7 521 63.3
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 1.6e-174 616.7 521 63.3
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 2.8e-174 615.9 521 63.1
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 6.8e-173 611.3 537 60.7
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 1.5e-172 610.1 398 78.1
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 3.2e-170 602.4 503 62.4
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 1.5e-164 583.6 518 58.9
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 1.1e-157 560.8 405 68.6
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 4.6e-153 545.4 368 75.3
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 2.3e-152 543.1 513 55.2
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 9.3e-146 521.2 360 73.6
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 1.8e-125 453.8 383 63.4
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 1.5e-124 450.7 276 80.4
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 4.3e-119 432.6 521 50.1
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.5e-116 424.1 475 54.5
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 3.0e-112 409.8 554 44.0
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 1.3e-110 404.4 516 43.2
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 2.9e-107 393.3 526 43.3
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.8e-101 374.0 498 46.2
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 6.1e-97 359.0 256 68.8
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 1.1e-93 348.2 256 69.1
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 7.0e-93 345.5 207 81.2
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.4e-88 331.3 567 36.2
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 5.2e-88 329.3 238 71.0
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 4.4e-87 326.2 263 61.2
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 1.3e-75 288.1 466 40.6
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 3.9e-75 286.6 221 68.3
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 6.1e-73 279.3 223 65.9
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 6.4e-70 269.2 242 62.4
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 6.6e-67 259.2 261 47.5
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 5.6e-58 229.6 240 47.5
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 5.6e-58 229.6 478 30.5
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 9.5e-58 228.8 222 55.4
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 1.2e-52 211.8 248 51.6
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 3.6e-49 200.3 187 55.1
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 1.8e-48 198.0 148 66.2
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 2.1e-41 174.5 438 32.4
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 9.0e-40 169.1 259 43.6
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 7.6e-39 166.0 181 50.3
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 1.8e-32 144.8 526 29.3
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 6.9e-32 142.9 107 64.5
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 3.9e-27 127.1 112 58.0
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 2.5e-26 124.4 83 75.9
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 1.1e-24 119.0 182 40.1
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 6.9e-24 116.3 103 59.2
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 9.0e-24 115.9 126 54.0
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 3.9e-19 100.5 121 45.5
QL02p028464 Quercus lobata HOM05D005847 ORTHO05D007143 1.9e-18 98.2 94 54.3
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 3.7e-17 94.0 183 37.7
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 6.5e-14 83.2 51 64.7
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 2.4e-08 64.7 70 51.4
Medtr8g040530 Medicago truncatula HOM05D005847 ORTHO05D007143 5.9e-07 60.1 91 39.6


User provided reference genes

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